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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025965 ID=TCONS_00025965|Name=TCONS_00025965|organism=Clytia hemisphaerica|type=transcript|length=1900bp
CCGATTTCTAAGCGGGCTAATATACGGGCTAATTTCGGGAACAAAGTAAA
CCGAtcttccaataatataaatgtGATGAAGTATAGGCAAATCAGCAAAT
TTCCAACTCCAATCACGAATGACTTGATTTGTAAAACGAGTAAATTGTCT
CGGTTATCCAAAGCTGTATAAGAGAGGATGATAGGCACAAGTGTAATCAA
GTTGAGAAAATTACCAGACATTGTAGTACAAAGTTTCTCAAACCATTTAC
GTTCAATCGCTGTCATAATTTCGGGACGTCTCGGTAAATATTTCTCATAG
GGATCCAGGTAGAGTACTAGTACGATATTAATCACGAGTAAAGCGATAAT
AAAGGGTCGTTGTAGTCCCCAAGTGATCGGTATAAAGGATAAAATGACGG
ATAACAACATCCAACGTAACGTCAAGAAAACAACAAACACTGAGTGACCA
TTATATACGCCATCAGGGAGGAACATAATCCCAATTTCGTTATTAACATC
ATCTGGGAATAAttgtttgaaataaatataatgCAATGTAAATGGTATTC
CAAGGAAATAAAAGAAAGACCCGAATATACCCAACATTTGGATTATGGAT
TTTAGTTCACATTTCTTCCATGGTTGTGATGACATATACCATATGCCAGT
TACTGGGTCCATTTTACAACTCAGCGTACTTAAGCTCATGTTACTCAAAG
GAAACTGAAGAACTGACATGAATAAACAGTAAGAAAGAAATGCTCTCCTC
CAAACTGGAATCTTCTGTACAGAACCAACAATCAGCATGTACAGTACTAG
CAGTATTCCTAGTATGAGTGGTAGACAAAAAATAAGTACAAACGCACCTT
CCCAGCCTAAGTTCGTTCCAGTGTAAAAATTCGGTAAACAGGCTAAACCA
GGGACAGGTGCGTACATCATTTCTAAAAACTGTAGAAGatatttcatgaa
atttggcCATACGAAGTTTCCTTGTAATAACGCTTGTAGTGTTTGTAtgt
agaaaatgaaagtgagTGTAGCAtgcggtggagagcgaagttgTTGCATG
TAGACAATCACTACGATGAAGACCATGAATAAAACTGACGCTGTGGAGGA
GATCCCGAGAAGGACCAATAAAACGGTAATTAAAACTTCCAACAGGTTTT
GATCGGTCACGGCATATTCGTTGAACGCTTTCGCCGATTTATGTTTACGT
ATGAAATAGACTGCAAGAATGAAAATTGACGTAAGAAGGGCAGCGATGAC
GCAAACGGTTTGGCGTAAACCCATTGCACACGGGGCACAATGGTAAGGTG
CTTTACGGTAATAGCCGTTCTCACAGGCCGAACAAAGTCGATCTTTATGC
CCGATCGGACAGGGGTTTGAGCATGAGCTTGTACATTTTGGATCGATATC
TGAAGCCGTGCGGTTTTGACAATGTAGATGACAGACTGAGCCCGTACATG
GTGTAAACCGAGACATAGTCGTTGAGCATTTTATAACTGCCTGTAAATTA
CGAGGTGTGTCTGGCCAATAGCCTTTAGAAACGTATAAAACAGCATCAGT
TAGGTTGGTTGAGCCACCAATACACATGGCATTAGGCAAGCAAGGAACAC
ATCTTTTTGTAGCCGACCCATAGTAGCTGATTTTACAGTAGCAATCGTCT
ATGGTCTTCGCGCCGACCTTCGAAGTTGCATTCTCTGGGCACCTTTCTTG
AGTTGGTTTGACTGATCCTTTTGGACAGTAATATCCAGATAGACACGTTT
GTGGAGCATTTGCTGCTTCGTCGCCAGAGAAACTTTGAGCAGTACCAGCA
GGGCAATACGTGCCAGCTGGACATAAGCGAGGTGGCGTCGCCGTCTTGTC
TAAAACGTCTGCGAGTGGGTTGGATGTTGATGTACCCTCTTGACAAAAGA Run BLAST on NCBI transcript from alignment at sc0000556:70020..71978- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025965 ID=TCONS_00025965|Name=TCONS_00025965|organism=Clytia hemisphaerica|type=transcript|length=1959bp|location=Sequence derived from alignment at sc0000556:70020..71978- (Clytia hemisphaerica)
CCGATTTCTAAGCGGGCTAATATACGGGCTAATTTCGGGAACAAAGTAAA
CCGATCTTCCAATAATATAAATGTGATGAAGTATAGGCAAATCAGCAAAT
TTCCAACTCCAATCACGAATGACTTGATTTGTAAAACGAGTAAATTGTCT
CGGTTATCCAAAGCTGTATAAGAGAGGATGATAGGCACAAGTGTAATCAA
GTTGAGAAAATTACCAGACATTGTAGTACAAAGTTTCTCAAACCATTTAC
GTTCAATCGCTGTCATAATTTCGGGACGTCTCGGTAAATATTTCTCATAG
GGATCCAGGTAGAGTACTAGTACGATATTAATCACGAGTAAAGCGATAAT
AAAGGGTCGTTGTAGTCCCCAAGTGATCGGTATAAAGGATAAAATGACGG
ATAACAACATCCAACGTAACGTCAAGAAAACAACAAACACTGAGTGACCA
TTATATACGCCATCAGGGAGGAACATAATCCCAATTTCGTTATTAACATC
ATCTGGGAATAATTGTTTGAAATAAATATAATGCAATGTAAATGGTATTC
CAAGGAAATAAAAGAAAGACCCGAATATACCCAACATTTGGATTATGGAT
TTTAGTTCACATTTCTTCCATGGTTGTGATGACATATACCATATGCCAGT
TACTGGGTCCATTTTACAACTCAGCGTACTTAAGCTCATGTTACTCAAAG
GAAACTGAAGAACTGACATGAATAAACAGTAAGAAAGAAATGCTCTCCTC
CAAACTGGAATCTTCTGTACAGAACCAACAATCAGCATGTACAGTACTAG
CAGTATTCCTAGTATGAGTGGTAGACAAAAAATAAGTACAAACGCACCTT
CCCAGCCTAAGTTCGTTCCAGTGTAAAAATTCGGTAAACAGGCTAAACCA
GGGACAGGTGCGTACATCATTTCTAAAAACTGTAGAAGATATTTCATGAA
ATTTGGCCATACGAAGTTTCCTTGTAATAACGCTTGTAGTGTTTGTATGT
AGAAAATGAAAGTGAGTGTAGCATGCGGTGGAGAGCGAAGTTGTTGCATG
TAGACAATCACTACGATGAAGACCATGAATAAAACTGACGCTGTGGAGGA
GATCCCGAGAAGGACCAATAAAACGGTAATTAAAACTTCCAACAGGTTTT
GATCGGTCACGGCATATTCGTTGAACGCTTTCGCCGATTTATGTTTACGT
ATGAAATAGACTGCAAGAATGAAAATTGACGTAAGAAGGGCAGCGATGAC
GCAAACGGTTTGGCGTAAACCCATTGCACACGGGGCACAATGGTAAGGTG
CTTTACGGTAATAGCCGTTCTCACAGGCCGAACAAAGTCGATCTTTATGC
CCGATCGGACAGGGGTTTGAGCATGAGCTTGTACATTTTGGATCGATATC
TGAAGCCGTGCGGTTTTGACAATGTAGATGACAGACTGAGCCCGTACATG
GTGTAAACCGAGACATAGTCGTTGAGCATTTTATAACTGCCTGTAAATTA
CGAGGTGTGTCTGGCCAATAGCCTTTAGAAACGTATAAAACAGCATCAGT
TAGGTTGGTTGAGCCACCAATACACATGGCATTAGGCAAGCAAGGAACAC
ATCTTTTTGTAGCCGACCCATAGTAGCTGATTTTACAGTAGCAATCGTCT
ATGGTCTTCGCGCCGACCTTCGAAGTTGCATTCTCTGGGCACCTTTCTTG
AGTTGGTTTGACTGATCCTTTTGGACAGTAATATCCAGATAGACACGTTT
GTGGAGCATTTGCTGCTTCGTCGCCAGAGAAACTTTGAGCAGTACCAGCA
GGGCAATACGTGCCAGCTGGACATAAGCGAGGTGGCGTCGCCGTCTTGTC
TAAAACATCTGCGAGTGGGTTGGATGTTGATGTANATGAGGTGGTGTTGC
TGTCTTGTCTAAAACGTCTGCGAGTGGGTTGGATGTTGATGTACCCTCTT
GACAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025965-exon-sc0000556-1575043694:70123..71978 | TCONS_00025965-exon-sc0000556-1575043694:70123..71978 | Clytia hemisphaerica | exon |
| TCONS_00025965-exon-sc0000556-1575043694:70020..70063 | TCONS_00025965-exon-sc0000556-1575043694:70020..70063 | Clytia hemisphaerica | exon |
| TCONS_00025965-exon-sc0000556-1510915933:70123..71978 | TCONS_00025965-exon-sc0000556-1510915933:70123..71978 | Clytia hemisphaerica | exon |
| TCONS_00025965-exon-sc0000556-1510915933:70020..70063 | TCONS_00025965-exon-sc0000556-1510915933:70020..70063 | Clytia hemisphaerica | exon |
| TCONS_00025965-exon-sc0000556-1491911889:70123..71978 | TCONS_00025965-exon-sc0000556-1491911889:70123..71978 | Clytia hemisphaerica | exon |
| TCONS_00025965-exon-sc0000556-1491911889:70020..70063 | TCONS_00025965-exon-sc0000556-1491911889:70020..70063 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000556 | supercontig | sc0000556:70020..71978 - |
Blast
The following BLAST results are available for this feature:
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