TCONS_00025979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025979
Unique NameTCONS_00025979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025979 ID=TCONS_00025979|Name=TCONS_00025979|organism=Clytia hemisphaerica|type=transcript|length=411bp
GAAAGTcacaggaaaaagtcatcaaatCACACGGATGTGAAAGTAAAAAT
CACACGGTGTGAAAGTATACATTTTACACTGCTATCCCACGCGTGGGAAT
CGGTTTGTTTTTACGCCGATGGGAAACGCAAAATCACACCCCTCAAAATC
ACACCCCTCAAATTCACACGTGTATAATTGAATTTCCGACGTGGTTAACG
CAGGATCACAGGCTTTAGACATTTTGTGCTGAATCGAACAATACACTTGT
TAAATCGCAAATCCCACATCGGATTTGGCATTTAACACTCGCTTATCTCA
TGTgctaaatcaaaaatcacacgCCAAAATTTTGATTCCCCATCCAGCTT
TTTGGAAAATGGCTTTGATTTGTATTTGATAAATTGTTAAATACATTTGA
TCATTCGTGAG
Run BLAST on NCBI

transcript from alignment at sc0000556:116418..116828

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025979 ID=TCONS_00025979|Name=TCONS_00025979|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0000556:116418..116828 (Clytia hemisphaerica)
CTCACGAATGATCAAATGTATTTAACAATTTATCAAATACAAATCAAAGC
CATTTTCCAAAAAGCTGGATGGGGAATCAAAATTTTGGcgtgtgattttt
gatttagcACATGAGATAAGCGAGTGTTAAATGCCAAATCCGATGTGGGA
TTTGCGATTTAACAAGTGTATTGTTCGATTCAGCACAAAATGTCTAAAGC
CTGTGATCCTGCGTTAACCACGTCGGAAATTCAATTATACACGTGTGAAT
TTGAGGGGTGTGATTTTGAGGGGTGTGATTTTGCGTTTCCCATCGGCGTA
AAAACAAACCGATTCCCACGCGTGGGATAGCAGTGTAAAATGTATACTTT
CACACCGTGTGATTTTTACTTTCACATCCGTGTGatttgatgactttttc
ctgtgACTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014616XLOC_014616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025979-exon-sc0000556-1491911889:116418..116828TCONS_00025979-exon-sc0000556-1491911889:116418..116828Clytia hemisphaericaexon
TCONS_00025979-exon-sc0000556-1510915933:116418..116828TCONS_00025979-exon-sc0000556-1510915933:116418..116828Clytia hemisphaericaexon
TCONS_00025979-exon-sc0000556-1575043694:116418..116828TCONS_00025979-exon-sc0000556-1575043694:116418..116828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000556supercontigsc0000556:116418..116828 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.171269	0.39772	0.972767	0	0.187162	1.12902	0.211394	0	0.733298	1.60145	0.350911	0.584038	0.242612	0.0997299	0.107025	0.922926	0.135138	0.373402	0	0.339623	0.745452	0.201377	0.410498	0.754275	0.673172	0	0	0.448873	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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