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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026047 ID=TCONS_00026047|Name=TCONS_00026047|organism=Clytia hemisphaerica|type=transcript|length=4294bpRun BLAST on NCBI transcript from alignment at sc0000560:119441..127442+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026047 ID=TCONS_00026047|Name=TCONS_00026047|organism=Clytia hemisphaerica|type=transcript|length=8002bp|location=Sequence derived from alignment at sc0000560:119441..127442+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026047 vs. Swiss-Prot (Human)
Match: ACH10 (Neuronal acetylcholine receptor subunit alpha-10 OS=Homo sapiens GN=CHRNA10 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 3.333e-50 Identity = 86/219 (39.27%), Postives = 127/219 (57.99%), Query Frame = 1
Query: 10 LDLKLEIGLQQIINVNEKAEYITVSAVFRQYWNDPNLRWSPEEYGNMTDINISPHQIWIPDIVLYNNIEKSTSFGGQLDKLKNKVIIDHHGNVSWLSLGILSGKCSMDITYFPFDEQHCSLKFGLWSYHGLLVDLRPTKDHVDLALYNNHTEWDLVEANQQHNIVYYGCCTEPFPDVTAEMVIRRRPLFYVLNLLLPMILIGILTLLSFYLPAESGKMI 666
L++ LE+ L QII+++E+ + +T+ RQ W D LRW P YG + I I +W PDIVLYN + V++ H G V W + I C +D+ FPFD QHC L FG W++ G +D+RP LA + + EW ++ + ++ YGCC+EP+PDVT +++RRR YV NLLLP +LI +L L+F+LPA+SG+ +
Sbjct: 55 LNVTLEVTLSQIIDMDERNQVLTLYLWIRQEWTDAYLRWDPNAYGGLDAIRIPSSLVWRPDIVLYNKADAQPP-----GSASTNVVLRHDGAVRWDAPAITRSSCRVDVAAFPFDAQHCGLTFGSWTHGGHQLDVRPRGAAASLADFVENVEWRVLGMPARRRVLTYGCCSEPYPDVTFTLLLRRRAAAYVCNLLLPCVLISLLAPLAFHLPADSGEKV 268 HSP 2 Score: 129.413 bits (324), Expect = 4.272e-31 Identity = 70/205 (34.15%), Postives = 116/205 (56.59%), Query Frame = 1
Query: 2668 QSVCPMDVTYFPFDEQKCSLKFASWTHDGLKIDIVPENETVDLKPYTPHSEWEMVSTVQRRTVEYYPCCDTPFPVLNIDITIRRRPLFQVIHLIVPMVLVGLLTLFSFNIPARSGERISYGVXXXXXXXXXXXXXSEMIPAAADALSKLGIFFNVLIIEMVVMIFAMCYVARMYHKTSGDKPIPRWMRKYVFEYFSYKLRIRDRG 3282
+S C +DV FPFD Q C L F SWTH G ++D+ P L + + EW ++ RR V Y CC P+P + + +RRR V +L++P VL+ LL +F++PA SGE++S GVT+LLA+T+F LLL+E +P A+++ +G ++ + + + +++ +P+P W R + + + L +R+RG
Sbjct: 151 RSSCRVDVAAFPFDAQHCGLTFGSWTHGGHQLDVRPRGAAASLADFVENVEWRVLGMPARRRVLTYGCCSEPYPDVTFTLLLRRRAAAYVCNLLLPCVLISLLAPLAFHLPADSGEKVSLGVTVLLALTVFQLLLAESMP-PAESVPLIGKYYMATMTMVTFSTALTILIMNLHYCGPSVRPVPAWARALLLGHLARGLCVRERG 354 HSP 3 Score: 126.331 bits (316), Expect = 4.446e-30 Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 2
Query: 2165 FKLRQNWPADYDVDARPIRDHSQPVRVKFGVAIGQITEVNTKAETFAVNLFLRQFWKDEYLSWNVTQYGGLNSTNISPEKIWLPDIVLQNNADNESELRGNLDKLTKKVIISSDGQVKWLSIAVLQSVCPMDVTYFPFDEQNCSLKFASWTHDGLKLDIVPENETVXF 2668
KL ++ A+Y RP+ D Q + V V + QI +++ + + + L++RQ W D YL W+ YGGL++ I +W PDIVL N AD + + V++ DG V+W + A+ +S C +DV FPFD Q+C L F SWTH G +LD+ P
Sbjct: 31 LKLFRDLFANYTSALRPVADTDQTLNVTLEVTLSQIIDMDERNQVLTLYLWIRQEWTDAYLRWDPNAYGGLDAIRIPSSLVWRPDIVLYNKADAQPP-----GSASTNVVLRHDGAVRWDAPAITRSSCRVDVAAFPFDAQHCGLTFGSWTHGGHQLDVRPRGAAASL 193 The following BLAST results are available for this feature:
BLAST of TCONS_00026047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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