TCONS_00026049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026049
Unique NameTCONS_00026049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026049 ID=TCONS_00026049|Name=TCONS_00026049|organism=Clytia hemisphaerica|type=transcript|length=1674bp
ACCGTACACACCACACAGTGAATGGGAGATGGTGTCCACCGTACAAAGAC
GAACAGTAGAATACTACCCATGCTGTGACACACCTTTCCCTGTCTTGAAC
ATCGATATCACCATCAGAAGACGTCCTTTATTTCAAGTCATCCACCTCAT
CGTACCCATGGTACTCGTCGGCCTGTTGACTCTCTTCTCGTTCAATATTC
CAGCTCGGTCAGGTATTTTAGTTTGCGTTTTCTCTTCGATCTGCTCACAT
TTCCTTTCGATTCACGAaagctttttcaaaagaattcaaCAATCAATCGT
CTTTGCTTGCACTTTTTCTAGGATTCGTTGAGTTCGATGTCCGTGTTTAA
ATTCCCTGAGAAAGGTGTTCCTCTTGCACTCTATTCAATTGCGAGTCAGG
AGCTGTTTTCGCGTAAAGGGATATATTGAAGGTTTGCTTTTTCTAGGAGA
ACGTATTTCGTACGGCGTCACTCTGCTTTTGGCCATGACGTTGTTTATGT
TGTTACTTTCTGAGATGATCCCTGCAGCAGCTGATGCTCTCTCAAAACTC
GGCATTTTTTTCAATGTTCTCATCATTGAAATGGTGGTCATGATATTTGC
CATGTGCTACGTGGCTCGCATGTATCATAAGACGTCAGGTGACAAACCCA
TACCACGATGGATGAGAAAATACGTTTTCGAGTATTTCTCTTACAAATTA
CGAATTCGTGATCGTGGTGTCGAGAAACGGAAAGAGTTTTATCCAACCGA
GATTGTTGTCGGTGGAGATGGAGAACTGTCACCCAAGACCAAAGAATACA
TAGAAAAGCAATCTGTTGACCAAAATGTCACAGAAAAGAAGATTCCTAAT
GGCAACAGCAGAAATCCTCTAGTAAATAAGGGGAATCCCTTGTTGAAAAA
AGTTCTCGCTTCCAAAGAGAGCAATTCGATTCTGTCAGAAACAATTGACA
ATCATGTTGCAAATGGAAATGTTCATGAAAACACACAAGAGGACCAAGGT
CCGAAAGAGGAAAGAAGTACTACCCAAGACGGTAGTGTAGTTGGTCAAGA
ggatgaagcaattccattaaAAAATAGTGAAATAGTCCAAGAGGTgagat
caaatttttcaggtaAAGATGGTGATGAACCCATTTTACAAATCGAAAAT
GCTGTAAGGAAAAACTCTTCTAACCAGCCAGAAGTGCTAGGACAAACAAA
GACATCAGGATTCAAGAGTATTGGCTTGTCAGTCATCAATAAGAAGAAAC
AAGCGGAAACAACAGAAACAGAAAACACTGATGAGAAGCCGGCCGCTGAG
AAACAGCCCTCCGTACCAAAGAGTAATAAATGGATGTCTTTCCGTACTGT
TGGATGCACCGTTACCAACTTAATGAAACGTAAAAATGAACtgatgataa
aaaaattgaacgCTGAAAGACGCGAGAAACGTTTCTTTTACGAATGGCGT
ATATGCGCTCAAACAATGGATCGGTTATGTTTTATCCTTTTTGCtgtcat
ctttgttttgacaacgATTgtaatattttatgatttttgaacAAATGTTG
CTTTACAAAAGAACACAACTGAACTGGCCGGCGGAAGCATTCATCAGAAA
TTATGAAATATGTACAATCGTATTTAAAGCATTTATTTTTGCATATTATC
TTAATGTAGTTACTAGATTATGAC
Run BLAST on NCBI

transcript from alignment at sc0000560:125713..127386+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026049 ID=TCONS_00026049|Name=TCONS_00026049|organism=Clytia hemisphaerica|type=transcript|length=1674bp|location=Sequence derived from alignment at sc0000560:125713..127386+ (Clytia hemisphaerica)
ACCGTACACACCACACAGTGAATGGGAGATGGTGTCCACCGTACAAAGAC
GAACAGTAGAATACTACCCATGCTGTGACACACCTTTCCCTGTCTTGAAC
ATCGATATCACCATCAGAAGACGTCCTTTATTTCAAGTCATCCACCTCAT
CGTACCCATGGTACTCGTCGGCCTGTTGACTCTCTTCTCGTTCAATATTC
CAGCTCGGTCAGGTATTTTAGTTTGCGTTTTCTCTTCGATCTGCTCACAT
TTCCTTTCGATTCACGAaagctttttcaaaagaattcaaCAATCAATCGT
CTTTGCTTGCACTTTTTCTAGGATTCGTTGAGTTCGATGTCCGTGTTTAA
ATTCCCTGAGAAAGGTGTTCCTCTTGCACTCTATTCAATTGCGAGTCAGG
AGCTGTTTTCGCGTAAAGGGATATATTGAAGGTTTGCTTTTTCTAGGAGA
ACGTATTTCGTACGGCGTCACTCTGCTTTTGGCCATGACGTTGTTTATGT
TGTTACTTTCTGAGATGATCCCTGCAGCAGCTGATGCTCTCTCAAAACTC
GGCATTTTTTTCAATGTTCTCATCATTGAAATGGTGGTCATGATATTTGC
CATGTGCTACGTGGCTCGCATGTATCATAAGACGTCAGGTGACAAACCCA
TACCACGATGGATGAGAAAATACGTTTTCGAGTATTTCTCTTACAAATTA
CGAATTCGTGATCGTGGTGTCGAGAAACGGAAAGAGTTTTATCCAACCGA
GATTGTTGTCGGTGGAGATGGAGAACTGTCACCCAAGACCAAAGAATACA
TAGAAAAGCAATCTGTTGACCAAAATGTCACAGAAAAGAAGATTCCTAAT
GGCAACAGCAGAAATCCTCTAGTAAATAAGGGGAATCCCTTGTTGAAAAA
AGTTCTCGCTTCCAAAGAGAGCAATTCGATTCTGTCAGAAACAATTGACA
ATCATGTTGCAAATGGAAATGTTCATGAAAACACACAAGAGGACCAAGGT
CCGAAAGAGGAAAGAAGTACTACCCAAGACGGTAGTGTAGTTGGTCAAGA
ggatgaagcaattccattaaAAAATAGTGAAATAGTCCAAGAGGTgagat
caaatttttcaggtaAAGATGGTGATGAACCCATTTTACAAATCGAAAAT
GCTGTAAGGAAAAACTCTTCTAACCAGCCAGAAGTGCTAGGACAAACAAA
GACATCAGGATTCAAGAGTATTGGCTTGTCAGTCATCAATAAGAAGAAAC
AAGCGGAAACAACAGAAACAGAAAACACTGATGAGAAGCCGGCCGCTGAG
AAACAGCCCTCCGTACCAAAGAGTAATAAATGGATGTCTTTCCGTACTGT
TGGATGCACCGTTACCAACTTAATGAAACGTAAAAATGAACtgatgataa
aaaaattgaacgCTGAAAGACGCGAGAAACGTTTCTTTTACGAATGGCGT
ATATGCGCTCAAACAATGGATCGGTTATGTTTTATCCTTTTTGCtgtcat
ctttgttttgacaacgATTgtaatattttatgatttttgaacAAATGTTG
CTTTACAAAAGAACACAACTGAACTGGCCGGCGGAAGCATTCATCAGAAA
TTATGAAATATGTACAATCGTATTTAAAGCATTTATTTTTGCATATTATC
TTAATGTAGTTACTAGATTATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014656XLOC_014656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026049-exon-sc0000560-1491911889:125713..127386TCONS_00026049-exon-sc0000560-1491911889:125713..127386Clytia hemisphaericaexon
TCONS_00026049-exon-sc0000560-1510915933:125713..127386TCONS_00026049-exon-sc0000560-1510915933:125713..127386Clytia hemisphaericaexon
TCONS_00026049-exon-sc0000560-1575043694:125713..127386TCONS_00026049-exon-sc0000560-1575043694:125713..127386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000560supercontigsc0000560:125713..127386 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.578268	0.353503	0.0939596	0	0.211882	0.0567598	0.164762	0.222072	0	0	0	0.037531	0.110279	0	0.0343139	0	2.42778	4.32671	0.116114	0.451733	3.00916	2.51536	5.06342	3.9732	2.42719	2.52602	0.342133	0.726429	2.10398	2.4193
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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