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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026052 ID=TCONS_00026052|Name=TCONS_00026052|organism=Clytia hemisphaerica|type=transcript|length=4150bpRun BLAST on NCBI protein sequence of TCONS_00026052-protein >TCONS_00026052-protein ID=TCONS_00026052-protein|Name=TCONS_00026052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1216bp MATKSKSTSSSRISMVIHSLTVTWAEFCHLLKDNHKDSARHLSDLNTSCSRun BLAST on NCBI transcript from alignment at sc0000560:167702..215213+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026052 ID=TCONS_00026052|Name=TCONS_00026052|organism=Clytia hemisphaerica|type=transcript|length=47512bp|location=Sequence derived from alignment at sc0000560:167702..215213+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000560:167702..215213+ >TCONS_00026052 ID=TCONS_00026052|Name=TCONS_00026052|organism=Clytia hemisphaerica|type=CDS|length=94926bp|location=Sequence derived from alignment at sc0000560:167702..215213+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026052 vs. Swiss-Prot (Human)
Match: CBPC1 (Cytosolic carboxypeptidase 1 OS=Homo sapiens GN=AGTPBP1 PE=1 SV=3) HSP 1 Score: 473.011 bits (1216), Expect = 1.951e-143 Identity = 260/603 (43.12%), Postives = 346/603 (57.38%), Query Frame = 1
Query: 1960 SVEQSRV----CPTLHNDSTSSVLNQSGSTFNQLNCRIQHVSEFVKIPEPTTLGHYPPSTLEPLLPRKTNLQKQMLFTDLSRQIFPDRVIKRVVYDLDELTKNTPPVTPNVSATNLLSSPPTSTNRIVPVLRKSQSAPKLSIHHLNAATLQRISKEDVANSKPLSFESRFECGNLRKAIQIRQYEYDLILNSDTNTCGHHQWFYFQVQNMEVNVEYRFNIINCEKPNSQFNYGMTSLMYSVVNAKRGNPSWHRTGTNVCYYRNYFVR-----GVGSSKSYFTATFTISFPHKNDTCFLAYHYPYSLSMLKMDVLRME-ASLCQHIIYSNQVLCQTLGGNDVNLLTITNPSISATRRDII---KRPYVVLTARVHPGESNSSWIMKGILDFLTSSDTLARQLRSIYIFKIVPMLNPDGVVNGCHRCSLTGQDLNRQWKHPDPILHPSIYHVKTLIQSMTAAGKKPMLFVDFHGHSRKKNVFMYGCQEKQPETTLSATDERGDXXXXXXXXXXXXXXXXXXXXXXFRDDRSSYCSNLDFYNEDSVIKLFPRILSSVSPYFSLQNCNYAMEKSKEATARIVGFRELGIDRSYTLESSYSGMDQGEY 3729
SVEQ+ V PTLH+ + ++ + V E+ ++ P GH PP EP+L R +Q+ + D+ R I +I RVVYD L +P N +P + D+ L F S+FE GNLRK IQIR+ EYDLILNSD N+ +HQWFYF+V M V YRFNIINCEK NSQFNYGM LMYSV A P W R GT++CYY+N+F R G KSY+T TFT++FPHK+D C+ AYHYPY+ S L+M + ++E A Q I + VLC+TL GN L+TIT S I RPYV L+ARVHPGE+N+SW+MKG L++L S++ A+ LR YIFKIVPMLNPDGV+NG HRCSL+G+DLNRQW+ P P LHP+IYH K L+Q + A + P+++ D+HGHSRKKNVFMYGC K+ T+ T +D ++ C + ED+ + P+ILS ++P F + +C++ +EKSKE+TAR+V +RE+G+ RSYT+ES+ G DQG+Y
Sbjct: 610 SVEQASVEVPDGPTLHDPDL----------YIEIVKNTKSVPEYSEVAYPDYFGHIPPPFKEPILERPYGVQRTKIAQDIERLIHQSDIIDRVVYD--------------------LDNP----NYTIP------------------------EEGDI-----LKFNSKFESGNLRKVIQIRKNEYDLILNSDINSNHYHQWFYFEVSGMRPGVAYRFNIINCEKSNSQFNYGMQPLMYSVQEALNARPWWIRMGTDICYYKNHFSRSSVAAGGQKGKSYYTITFTVNFPHKDDVCYFAYHYPYTYSTLQMHLQKLESAHNPQQIYFRKDVLCETLSGNSCPLVTITAMPESNYYEHICHFRNRPYVFLSARVHPGETNASWVMKGTLEYLMSNNPTAQSLRESYIFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQSPSPDLHPTIYHAKGLLQYLAAVKRLPLVYCDYHGHSRKKNVFMYGCSIKE---TVWHT-----------------------------NDNATSCDVV----EDTGYRTLPKILSHIAPAFCMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKY 1113 HSP 2 Score: 119.013 bits (297), Expect = 9.178e-27 Identity = 92/324 (28.40%), Postives = 168/324 (51.85%), Query Frame = 1
Query: 271 DSARHLSDLNTSCSKLQQLLSTQEKCCRMLFSGHKADIPLLFDILQYFSKVDHIICTCILDCLHCLCNTA--KRVTYLSEMGLVCVLSDCLVNATNTFFNLHEASSLEDLFYFFHYILNKLA-KDKRLVTISRLSGXXXXXXXXLKNYDSSGKVFHVVLNVMKIYSSSPASCSIMARGSVIPALIKLIPSCGNRKIQXXXXXXXXXXXXCKSKTGAKKAVCMGAIPTLLELYHEWQKVDHRNRQISLRKAILNVIKTLIGYAFGRKSFSSADGFRTLYFLGLEGIESRECEPLIKIVSVILRKCVKSKKIALTKQSSVYSVTLP 1233
D+AR+++ SK+ L +QEK R + + + +L L+ + D IL L L + +RV++L G +L L+NA+ E+ EDL H IL K+ KDK+ +R++GA++ ++ ++K + ++ L ++++YS++ + + + V+ + K+I + L+K++L+ L+ L KSKT A++AV G + LL +Y +W + D+R+R + +RK IL +K++ GRK+F A+G + LY E + R +PL+ S+I+RKC ++ L S + LP
Sbjct: 36 DTARYVT------SKILHLAQSQEKTRREMTAKGSTGMEILLSTLE--NTKDLQTTLNILSILVELVSAGGGRRVSFLVTKGGSQILLQLLMNASK------ESPPHEDLMVQIHSILAKIGPKDKKFGVKARINGALNITLNLVKQNLQNHRLVLPCLQLLRVYSANSVNSVSLGKNGVVELMFKIIGPFSKKNSSLIKVALDTLAALLKSKTNARRAVDRGYVQVLLTIYVDWHRHDNRHRNMLIRKGILQSLKSVTNIKLGRKAFIDANGMKILYNTSQECLAVRTLDPLVNTSSLIMRKCFPKNRLPLPTIKSSFHFQLP 345 The following BLAST results are available for this feature:
BLAST of TCONS_00026052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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