TCONS_00026059 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026059
Unique NameTCONS_00026059
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026059 ID=TCONS_00026059|Name=TCONS_00026059|organism=Clytia hemisphaerica|type=transcript|length=234bp
CTCAAATCAACGGTCTCGTTTTCCGGCACTATATCTATTTTCAATCCATC
GTGCGTCCAACTGGCAAACTTCAAGGAGCATTTCTGTTCATCAAAAGGGA
AGTATGTGACATCCATGGGGCAGACGGATTGAAGGACGGCAATTGACAAC
CATTTGACCTGACCATCACTTGAGATGATCACCTTCTTCGTTAACTTGTC
CAAATTACCACGAAGTTCACTCTCGTTGTCAGCG
Run BLAST on NCBI

transcript from alignment at sc0000560:124886..125247-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026059 ID=TCONS_00026059|Name=TCONS_00026059|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at sc0000560:124886..125247- (Clytia hemisphaerica)
CTCAAATCAACGGTCTCGTTTTCCGGCACTATATCTATTTTCAATCCATC
GTGCGTCCAACTGGCAAACTTCAAGGAGCATTTCTGTTCATCAAAAGGGA
AGTATGTGACATCCATGGGGCAGACAGATTGAAGCNAACGGTCTCGTTTT
CCGGCACTATATCTAATTTCAATCCATCGTGCGTCCAACTGGCAAACTTC
AAGGAGCAATTTTGTTCATCGAAAGGGAAGTATGTGACATCCATGGGGCA
GACGGATTGAAGGACGGCAATTGACAACCATTTGACCTGACCATCACTTG
AGATGATCACCTTCTTCGTTAACTTGTCCAAATTACCACGAAGTTCACTC
TCGTTGTCAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014660XLOC_014660Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026059-exon-sc0000560-1575043694:125138..125247TCONS_00026059-exon-sc0000560-1575043694:125138..125247Clytia hemisphaericaexon
TCONS_00026059-exon-sc0000560-1575043694:124886..125009TCONS_00026059-exon-sc0000560-1575043694:124886..125009Clytia hemisphaericaexon
TCONS_00026059-exon-sc0000560-1510915933:125138..125247TCONS_00026059-exon-sc0000560-1510915933:125138..125247Clytia hemisphaericaexon
TCONS_00026059-exon-sc0000560-1510915933:124886..125009TCONS_00026059-exon-sc0000560-1510915933:124886..125009Clytia hemisphaericaexon
TCONS_00026059-exon-sc0000560-1491911889:125138..125247TCONS_00026059-exon-sc0000560-1491911889:125138..125247Clytia hemisphaericaexon
TCONS_00026059-exon-sc0000560-1491911889:124886..125009TCONS_00026059-exon-sc0000560-1491911889:124886..125009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000560supercontigsc0000560:124886..125247 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00512832	4.1094	0	0	0	1.80714	0.911752	0.537175	0	0	2.79917	0	1.60686	6.356	0	0	0	0	0	0	0	0	8.75129	5.72196	0	0	0.978463	0	3.76649	10.0598
Blast
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BLAST of TCONS_00026059 vs. Swiss-Prot (Human)
Match: ACHB3 (Neuronal acetylcholine receptor subunit beta-3 OS=Homo sapiens GN=CHRNB3 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.139e-17
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = -2 
Query:    6 LTKKVIISSDGQVKWLSIAVLQSVCPMDVTYFPFDEQKCSLKFASWTHDGLKIDIVPENETVD 194
            L  KVI+ S+G V W   A  +S C MDVT+FPFD Q CS+KF SWT+DG  +D++  NE VD
Sbjct:  129 LMTKVIVKSNGTVVWTPPASYKSSCTMDVTFFPFDRQNCSMKFGSWTYDGTMVDLILINENVD 191
The following BLAST results are available for this feature:
BLAST of TCONS_00026059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHB31.139e-1753.97Neuronal acetylcholine receptor subunit beta-3 OS=... [more]
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