TCONS_00026062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026062
Unique NameTCONS_00026062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026062 ID=TCONS_00026062|Name=TCONS_00026062|organism=Clytia hemisphaerica|type=transcript|length=469bp
AAAGCATCGTTGAAAGACGCGAATTCATCGTGAACAGCCATCAGACGTTG
TCATGTAGAGATTTCATTAGCCCTTCAAGAGTGCCAGTGTCAAAGGTATG
TGGAAGGTTACCCAATTTGTTGTCAATAGAGGTTATGATGTTGAGGACGA
CTTTCAAAGACGCACTCTTATTTGTCCCCGATTGTCCAACTACAAGGCCA
TAAAGAATTACTGGTTCGGTATGCAAATCTTCATAGGCTACGGTAGCATG
CTGCGCACAATAAGCTGTACTGATAAGAAGCGGTGTTGAGATGTAGGATT
TCAGGACGCCAAGGATTGTTGAATTGTACGAAATCCACTTCACTATTTCT
TTTGGAAAGCATTCATCAACATTGAATGTTACATCCCAAGCAGCATTCAC
AGACTTTTGGTAGGAAGCAGATTCGATTAGTGGATATTTGGACATGTTTC
TGTAGAATAAGTGAAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00026062-protein

>TCONS_00026062-protein ID=TCONS_00026062-protein|Name=TCONS_00026062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
VFHLFYRNMSKYPLIESASYQKSVNAAWDVTFNVDECFPKEIVKWISYNS
TILGVLKSYISTPLLISTAYCAQHATVAYEDLHTEPVILYGLVVGQSGTN
KSASLKVVLNIITSIDNKLGNLPHTFDTGTLEGLMKSLHDNV
Run BLAST on NCBI

transcript from alignment at sc0000560:12809..13277

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026062 ID=TCONS_00026062|Name=TCONS_00026062|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0000560:12809..13277 (Clytia hemisphaerica)
GTTTTTCACTTATTCTACAGAAACATGTCCAAATATCCACTAATCGAATC
TGCTTCCTACCAAAAGTCTGTGAATGCTGCTTGGGATGTAACATTCAATG
TTGATGAATGCTTTCCAAAAGAAATAGTGAAGTGGATTTCGTACAATTCA
ACAATCCTTGGCGTCCTGAAATCCTACATCTCAACACCGCTTCTTATCAG
TACAGCTTATTGTGCGCAGCATGCTACCGTAGCCTATGAAGATTTGCATA
CCGAACCAGTAATTCTTTATGGCCTTGTAGTTGGACAATCGGGGACAAAT
AAGAGTGCGTCTTTGAAAGTCGTCCTCAACATCATAACCTCTATTGACAA
CAAATTGGGTAACCTTCCACATACCTTTGACACTGGCACTCTTGAAGGGC
TAATGAAATCTCTACATGACAACGTCTGATGGCTGTTCACGATGAATTCG
CGTCTTTCAACGATGCTTT

Coding sequence (CDS) from alignment at sc0000560:12809..13277

>TCONS_00026062 ID=TCONS_00026062|Name=TCONS_00026062|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0000560:12809..13277 (Clytia hemisphaerica)
GTTTTTCACTTATTCTACAGAAACATGTCCAAATATCCACTAATCGAATC
TGCTTCCTACCAAAAGTCTGTGAATGCTGCTTGGGATGTAACATTCAATG
TTGATGAATGCTTTCCAAAAGAAATAGTGAAGTGGATTTCGTACAATTCA
ACAATCCTTGGCGTCCTGAAATCCTACATCTCAACACCGCTTCTTATCAG
TACAGCTTATTGTGCGCAGCATGCTACCGTAGCCTATGAAGATTTGCATA
CCGAACCAGTAATTCTTTATGGCCTTGTAGTTGGACAATCGGGGACAAAT
AAGAGTGCGTCTTTGAAAGTCGTCCTCAACATCATAACCTCTATTGACAA
CAAATTGGGTAACCTTCCACATACCTTTGACACTGGCACTCTTGAAGGGC
TAATGAAATCTCTACATGACAACGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014663XLOC_014663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026062-exon-sc0000560-1491911889:12809..13277TCONS_00026062-exon-sc0000560-1491911889:12809..13277Clytia hemisphaericaexon
TCONS_00026062-exon-sc0000560-1510915933:12809..13277TCONS_00026062-exon-sc0000560-1510915933:12809..13277Clytia hemisphaericaexon
TCONS_00026062-exon-sc0000560-1575043694:12809..13277TCONS_00026062-exon-sc0000560-1575043694:12809..13277Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026062-proteinTCONS_00026062-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000560supercontigsc0000560:12809..13277 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.409359	0.399189	0.154499	0	1.10409	1.3087	1.05259	1.14966	0.344959	0.569716	0.27649	0.181754	0.0907505	0	0	0	0.204869	0	0.145052	0.151787	0	0	0	0	0	0.261502	0.374208	0.199682	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025048DUF3987
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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