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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026068 ID=TCONS_00026068|Name=TCONS_00026068|organism=Clytia hemisphaerica|type=transcript|length=3742bpRun BLAST on NCBI protein sequence of TCONS_00026068-protein >TCONS_00026068-protein ID=TCONS_00026068-protein|Name=TCONS_00026068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=921bp MKMNDINEAEELHKESLEILAKLASSKAEILEDDNVISNFKVSKCLKNAKRun BLAST on NCBI transcript from alignment at sc0000562:97789..108142+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026068 ID=TCONS_00026068|Name=TCONS_00026068|organism=Clytia hemisphaerica|type=transcript|length=10354bp|location=Sequence derived from alignment at sc0000562:97789..108142+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000562:97789..108142+ >TCONS_00026068 ID=TCONS_00026068|Name=TCONS_00026068|organism=Clytia hemisphaerica|type=CDS|length=33192bp|location=Sequence derived from alignment at sc0000562:97789..108142+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026068 vs. Swiss-Prot (Human)
Match: E2F8 (Transcription factor E2F8 OS=Homo sapiens GN=E2F8 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.498e-26 Identity = 74/175 (42.29%), Postives = 95/175 (54.29%), Query Frame = 1
Query: 253 TPQKEKTSS-GDPVTPTANLKMLVCAASVLTPAVDEIEN--QKRNLFTDNIGRIHINNIPDSVLLNKLEVPSTLEPKSKKGXXXXXXLLGRKEKSLGLLCKRFLEIYPEYSSNGTT--ILLDDVVKLLSIGRRRVYDIVNVLESMEMMVRQAKNKYLWYGKSRLRITLTKLKALA 762
TP K K S G+P TPTANLKML+ A S EI N QKR LF + G + L G + ++ RKEKSLGLLC +FL YP Y + I LD+V + L++ RRR+YDIVNVLES+ M+ R AKN+Y W+G+ L TL LK++
Sbjct: 44 TPTKPKEGSQGEPWTPTANLKMLISAVS------PEIRNRDQKRGLFDNRSGLPEAKDCIHEHL---------------SGDEFEKSQPSRKEKSLGLLCHKFLARYPNYPNPAVNNDICLDEVAEELNVERRRIYDIVNVLESLHMVSRLAKNRYTWHGRHNLNKTLGTLKSIG 197 HSP 2 Score: 87.4261 bits (215), Expect = 3.148e-17 Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1087 RSLGILCQKFIMLFMVAENNVVTLDKAARILLNE---SDEGPAKYKTKVRRLYDIANILTSIEFLEKTNSYENASKKAAYKWVGLDLKSLDSEDGIKKAFQSLEFSVTRHS 1410
+SL ++ QKF+MLF+V+ +V+L+ AA+IL+ E D +K+KTK+RRLYDIAN+L+S++ ++K + E +K A+KW G ++ S F + V R S
Sbjct: 264 KSLRVMSQKFVMLFLVSTPQIVSLEVAAKILIGEDHVEDLDKSKFKTKIRRLYDIANVLSSLDLIKKVHVTEERGRKPAFKWTGPEISPNTSGSSPVIHFTPSDLEVRRSS 374 The following BLAST results are available for this feature:
BLAST of TCONS_00026068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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