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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026097 ID=TCONS_00026097|Name=TCONS_00026097|organism=Clytia hemisphaerica|type=transcript|length=3246bpRun BLAST on NCBI transcript from alignment at sc0000562:126..15866- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026097 ID=TCONS_00026097|Name=TCONS_00026097|organism=Clytia hemisphaerica|type=transcript|length=15741bp|location=Sequence derived from alignment at sc0000562:126..15866- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026097 vs. Swiss-Prot (Human)
Match: MACF1 (Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo sapiens GN=MACF1 PE=1 SV=4) HSP 1 Score: 86.2705 bits (212), Expect = 1.009e-16 Identity = 143/718 (19.92%), Postives = 297/718 (41.36%), Query Frame = 2
Query: 164 FQVWLQKAELQAENFNVNGIDLESVQDIYRRHQTFVKEVRKKEGDLTKVNNHGEAFLAEAKAFQKELETYLASIPDPLSSQASASSQTWVLEQKLHEINERYRKLIRTLSFKETLINESIAKHQEYLHKVQSFLPWLADAERHLAREIHEQVPSDAKRLQKKIDNVKRFHSGVQAHHNELVNIQ-IASDVLTGLEKRTSQLSSAEGKPQANVSHGTWLRTTISVMKRYEELCINVVNFESRLQSLHMTVQNFKDGLDLTYKWADATQQSMQKMTVVSYEIEILIRQVREIKIILLELEGRNSSLDS----LSKIYEQRKKDSSVVKQIERLKKIQVIFTDLHSRTDQRKIECTIS--------FKRYLSNFEEWADRTLQVLQSGELVTTDILQFEDNLQKISDDVEKNRPSFQYINQCGHELISMDRSRQTSEHLPLLDRINKKWQAITLQLINHTRKFDEVVKCSEK---YHSLLQPLLQWFDRMEGRVTTLAPVAIQSQVLIEQLGEQKSLLNDAYNHKGT----IEILSTIGEALVFIVYIQDKSKKDKV-------------------ERTAIEDEVSRIRARFNDIVTILESRGVNLEATLTEAEQYQTLHVDVLAWLESAEEAQRKW----SPIGNDLITLRKQYLDHQVYQRDLNNASSNVQDVLDSGRSLLENRTNARGSTQVRAQIESIEIRWETLIKKAGNRQDALE 2188
F+ WL+++E + EN + G E++ + +R +F ++V +GDL V G+ L +F++ E P + + +++ KL + ERY L + + +N + ++ ++ + S W+ E ++ + + + V SD LQ+++ K+ + H + +Q +A D++ EG+P + H TT S++ ++ L ++ S LQ Q+ ++ L+ + +Q+++ V S ++ + + ++ + SSL++ +++ E ++ V Q +L ++ F L Q++ E ++ F+ +++ + ++L SG DI F +Q+++ ++E + + + EL S + +H + + K + LQ R+ D C E+ + L++ +W EG + ++ ++ L +Q+ KSLL+D + KGT I T E L+ + D K + T I+ ++S + ++ + +L R +L+A L E+ VL WLES EE + SP + T++ Q ++ + +L S +Q V ++ LL N++ + + E + RWE + RQ LE
Sbjct: 3894 FESWLERSEKELENMHKGGSSPETLPSLLKRQGSFSEDVISHKGDLRFVTISGQKVLDMENSFKEGKE------PSEIGN---------LVKDKLKDATERYTALHSKCTRLGSHLNMLLGQYHQFQNSADSLQAWMQACEANVEKLLSDTVASDPGVLQEQLATTKQLQEELAEHQVPVEKLQKVARDIM-----------EIEGEPAPDHRHVQ--ETTDSILSHFQSLSYSLAERSSLLQKAIAQSQSVQESLESLLQSIGEVEQNLEGKQVSSLSSGVIQEALATNMKLKQDIARQKSSLEATREMVTRFMETADSTTAAVLQ-GKLAEVSQRFEQLC--LQQQEKESSLKKLLPQAEMFEHLSGKLQQFMENKSRMLASGNQPDQDITHFFQQIQELNLEMEDQQENLDTLEHLVTELSSCGFALDLCQHQDRVQNLRKDF--TELQKTVKEREKD-ASSCQEQLDEFRKLVRTFQKWLKETEGSIPP-TETSMSAKELEKQIEHLKSLLDD-WASKGTLVEEINCKGTSLENLIMEITAPDSQGKTGSILPSVGSSVGSVNGYHTCKDLTEIQCDMSDVNLKYEKLGGVLHERQESLQAILNRMEEVHKEANSVLQWLESKEEVLKSMDAMSSPTKTE--TVKAQAESNKAFLAELEQNSPKIQKVKEALAGLLVTYPNSQEAENWKKIQEELNSRWERATEVTVARQRQLE 4573 The following BLAST results are available for this feature:
BLAST of TCONS_00026097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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