TCONS_00026147 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00026147
Unique Name	TCONS_00026147
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1592

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000563:46111..49416-

transcript sequence

>TCONS_00026147 ID=TCONS_00026147|Name=TCONS_00026147|organism=Clytia hemisphaerica|type=transcript|length=1592bp
TGGATCTCTTATTAGATAAATAATACACAGAAGACCTGTCTATCTAACAT
ACAGTGTAGTCAGATCCTATCAACTATAGTGGTTTACATATTGTGGATGT
CTGGTCGCAAAGTCAAACAAGTTACATTATAATCGattttgtgtGCTCGG
CGATCTGTTGAAAAGATGACTTCAGTCGTGGAAGAAGGTGTGCTTTATCC
TACAGAAGtggaaataaaaaatgccaTACAACCGAAACCGAAGATTGCTG
AAGATTTCCTATTGGCTGAAGTTTCGATTCGTATTTCGAACCCCTTGGCA
ACCATCAAATTTTATACTGGTGTGCTTGGAATGACTTTGTTGACTTGGTG
GAATGACCAGAAAACGAGAACAACGAATTACGTTTTCACATTTGTAGATG
AAGCGATCATACCACCAAAAGAAAGAGACGAAAATCATTTCAATAAGTGG
AGATTATCTAGAGCTGGAAATATTGAAATGGCTTATTCATGGGATGGCAT
TACAGGCAAAACGAAATACGAATGTGGAGCCTTGAGGCCGAACGAATTTG
gtCACTTTGGTGTTGCAGTACCAAACTATAAGAAGGCGATGGAGCGATTT
CGAAGTCTTGGATGCACGATTATACCTTGTAAAAATGACGAATCTCTGAG
TTATATTCTGGATCCTGACGGTTATCGAATCGAGATTTTCACAGTACGTT
GGGGCGATGATGATCAAAATGATGGTTAAAAGTCAAATAGTTTGatgaaa
aagttcatcattCGAAGAATAAGATCTTACTTTCTGTAAACAGTACCGTG
CGCCCTGATGAAAACGGGAGCAGTTTAGCTCTTTGGcggttttaataatt
ttccaaattcgaaaaatattttacacacCTTCAGTATAAGGGGGATATCT
CTTGAAAGGTTGCTAATACACCCtataaagtatatattttctgaaagctg
ggtaaaaaacctttcagatgaaagaaaaaaaaaatccaaattattatttt
gatgacgtcagcagggatttcaagtttgaaaataaaaaataaatttttac
gtaaaaatatttttttttcacaaaaatcatcATAAAATCCAAAATAACTG
TAAGTTTTCTCTAAAACTTTGtacaaatgttcttatatacaaTATAATCA
AATGCTGAAAATTTTAGACCTAATGctttacaaaaactgaaaatattgat
atttcgGTGAACGCGTAAAATGACAGAAAATGGtataaaattgtaataaa
tcTACTATCAGTTTCATGACATGAAATTCTTCTTATGAGTCTATTTCAAG
GGTTCAAAATCATGAAACTAGACATTCTAAGtatatttaatgatgtcttG
CTAGGAATTGGCCAGTTAATAtgtccattttcaaattttagccaTGTACG
GCAATAACGTGAGCTATGCTACGTCCATTCAGTGTGTCATGCGGTAACTT
GAAAATCAGAAACGTCCATGAAATGAAATTGGTCAAATGACCCTTCTGTT
GTAAACAAAGGCCATTGTATGTGATTTGAGCAAGTAAATCAGTGATAAAT
CCAAGTGCTAGTCATTTATATGGTCATGGAGACGGCTTGTGC

Run BLAST on NCBI

transcript from alignment at sc0000563:46111..49416-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00026147 ID=TCONS_00026147|Name=TCONS_00026147|organism=Clytia hemisphaerica|type=transcript|length=3306bp|location=Sequence derived from alignment at sc0000563:46111..49416- (Clytia hemisphaerica)
TGGATCTCTTATTAGATAAATAATACACAGAAGACCTGTCTATCTAACAT
ACAGTGTAGTCAGATCCTATCAACTATAGTGGTTTACATATTGTGGATGT
CTGGTCGCAAAGTCAAACAAGTTACATTATAATCGGTAAGGATACCATAC
GGTAGTCAATTTTTTTGACCGACTTTGCTGGCGAATAATTTTTAGTTACT
TTACTTCCGTGAATACTTTAGTGCTGAATTTTGGGTTTATATGCGCTACT
GAAGACAAAGGATTACCACAGCTAAAGGAACTGCAATACTGTAAAATTGG
TCATTTTAATTAAGTTTTCCAATCCGAATTCCTCCAAATAGCCGAAGTTA
CTGTGGTAAATAAATAATTCTTTGGCAAAAAACTATTTGTCGGTAAAAAA
GTGACAGTGTTTTAGCAAGTGAAGAAATCTTTGCTGACGAGTTTTTCCCG
ACAATTTTTCTGCTAACAATTAAACAAATCAACAAACACCTACCTTAAAA
AATATCTTGCCTCTGTTTTCTTTAAAGATTTTGTGTGCTCGGCGATCTGT
TGAAAAGATGACTTCAGTCGTGGAAGAAGGTGTGCTTTATCCTACAGAAG
TGGAAATAAAAAATGCCATACAACCGAAACCGAAGATTGCTGAAGATTTC
CTATTGGCTGAAGTTTCGATTCGTATTTCGAACCCCTTGGCAACCATCAA
ATTTTATACTGGTGTGCTTGGAATGACGTAGGTTTATGTATTTGTAAAAA
CAGAGTAAAATTAAGAGGGTGTGCAAACAGAATCATACAAAAACCCGAAC
CAAGGGATTGGGTTCAAGTTTGATTTGAACTCAGAGCACTGCAGATTACA
TTATTTATCATTACACATAAACATGGTCTTTGTAAACAAGTTCATAATGA
GTAAATTGCTAAGAAGAGATTCTAACTATAATCATGCTGGTTTGGAACTT
CTCTATGTGGTGACTATCTGTCCTTCTCAGATCAATGGTCAAATGTCAAG
GAAAAATTTTTACCCCCTCCTCTCACGCATGTCAAGGAGATCAAACTATC
CATCCAAAGGGTGTTGCTGCACTCAAAACATGGGAGAAAAAAATCGAAGG
GGGTCCCAAATAATTGGAAAAGAATCCAGGGGGGCTGCCTTTAAAAAAAA
GGCCTCTTAAACATAGGGGGTATAACCCATTTTATCTTCTCACTCCGACA
GTTTGTTGACTTGGTGGAATGACCAGAAAACGAGAACAACGAATTACGTT
TTCACATTTGTAGATGAAGCGATCATACCACCAAAAGAAAGAGACGAAAA
TCATTTCAATAAGTGGAGATTATCTAGAGCTGGAAATATTGAAATGGCTT
AGTAAGTGGGAAACTATTTGATGGGAGGTAGACGAAACTTGAAAATCCAA
AGAATTTGTGATTCTATAAGAATAAAATTTCGTATTACAGACTCTTTTAC
TCTGACCTCCTGTTTTTTTAAATCATTTTTTCGAAAAAGTGACTTTCGTG
ATTTTTTCGGATTATTTACGCCCTTGGACCTCACGTTCATTTCAAGAAAG
AAGAAAAGAGAAACAAGAAATTTGGTTTGGTACTTTGTTGGTGTCGTATG
AGATAAGGCTGTTACATTGTCAACATGTATTTAGAGCTAATGTTTTTGTT
TGCATGTGTTTACATTGATTTCATTTTCTTCATTAGTTCATGGGATGGCA
TTACAGGCAAAACGAAATACGAATGTGGAGCCTTGAGGCCGAACGAATTT
GGTAAGCCACAATTTTTGTTCCCGTGTATCCAAGGTCTTAATTTACATGG
TAACAGAGAGATAGGACCAACTGCGTTTCGATACCCATAAGAGCAATTTT
GAATATGCGTTCCGTGAAAAATAAACGGTTAAATTAAATAAACTTAACTT
TAGCTGACGTCACAACATTGTTTCAACATCGATACAAATTTTTGTTCGTG
TCACAGGCGTTTCCTTGCCATTACTTTGACTTTGCAGTTTGATTTACTAA
TGATTTGTATTTTTCAAAGGTCACTTTGGTGTTGCAGTACCAAACTATAA
GAAGGCGATGGAGCGATTTCGAAGTCTTGGATGCACGATTATACCTTGTA
AAAGTAAGAAATAGTTCTTCGCTTGTTCCCATACTTCACTTCCCCTTTTT
AAAGCTGTAAAGTGAGTATTGCTAAAGGGTCCTACAACTTTCACCAAGCG
TTTTAAAAATCAGTCCCCCATAGAGTTTGTTTTTTGGCAAAAATTAGGAA
CATTAGGAAATCTTGGGGGAAGTTAATCCATTTATCAGCGACTGTAGTAC
CCCCTGCAGTCCTGGATATTATTTATTTCTCTCTTTTTTTCATCACAGAT
GACGAATCTCTGAGTTATATTCTGGATCCTGACGGTTATCGAATCGAGAT
TTTCACAGTACGTTGGGGCGATGATGATCAAAATGATGGTTAAAAGTCAA
ATAGTTTGATGAAAAAGTTCATCATTCGAAGAATAAGATCTTACTTTCTG
TAAACAGTACCGTGCGCCCTGATGAAAACGGGAGCAGTTTAGCTCTTTGG
CGGTTTTAATAATTTTCCAAATTCGAAAAATATTTTACACACCTTCAGTA
TAAGGGGGATATCTCTTGAAAGGTTGCTAATACACCCTATAAAGTATATA
TTTTCTGAAAGCTGGGTAAAAAACCTTTCAGATGAAAGAAAAAAAAAATC
CAAATTATTATTTTGATGACGTCAGCAGGGATTTCAAGTTTGAAAATAAA
AAATAAATTTTTACGTAAAAATATTTTTTTTTCACAAAAATCATCATAAA
ATCCAAAATAACTGTAAGTTTTCTCTAAAACTTTGTACAAATGTTCTTAT
ATACAATATAATCAAATGCTGAAAATTTTAGACCTAATGCTTTACAAAAA
CTGAAAATATTGATATTTCGGTGAACGCGTAAAATGACAGAAAATGGTAT
AAAATTGTAATAAATCTACTATCAGTTTCATGACATGAAATTCTTCTTAT
GAGTCTATTTCAAGGGTTCAAAATCATGAAACTAGACATTCTAAGTATAT
TTAATGATGTCTTGCTAGGAATTGGCCAGTTAATATGTCCATTTTCAAAT
TTTAGCCATGTACGGCAATAACGTGAGCTATGCTACGTCCATTCAGTGTG
TCATGCGGTAACTTGAAAATCAGAAACGTCCATGAAATGAAATTGGTCAA
ATGACCCTTCTGTTGTAAACAAAGGCCATTGTATGTGATTTGAGCAAGTA
AATCAGTGATAAATCCAAGTGCTAGTCATTTATATGGTCATGGAGACGGC
TTGTGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014698	XLOC_014698	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000563	supercontig	sc0000563:46111..49416 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.10303	0.117622	0.0730084	0.196062	0.919311	0.592276	3.9289	5.15297	20.9478	10.4558	17.9524	10.2609	9.22759	6.9919	5.2362	5.20238	0.199233	0.795945	0.283099	0.615698	0.258804	0.282292	2.6357	3.85442	13.8743	11.1458	0.145333	0.835134	0.99465	4.18169

Blast

[Close]

BLAST of TCONS_00026147 vs. Swiss-Prot (Human)
Match: LGUL (Lactoylglutathione lyase OS=Homo sapiens GN=GLO1 PE=1 SV=4)

HSP 1 Score: 97.0561 bits (240), Expect = 8.182e-23
Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 1

Query:  250 EDFLLAEVSIRISNPLATIKFYTGVLGMTLLTWWNDQKTRTTNYVFTFVDEAIIPPKERDENHFNKWRLSRAGNIEMAYSWDGITGKTK-YECGALRPNEFGHFGVAVPNYKKAMERFRSLGCTIIPCKND---ESLSYILDPDGYRIEIF 690
            +DFLL +  +R+ +P  ++ FYT VLGMTL+   +    + + Y   + D+  I PKE+DE     W LSR   +E+ ++W     +T+ Y  G   P  FGH G+AVP+   A +RF  LG   +   +D   + L++I DPDGY IEI 
Sbjct:   28 KDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDI-PKEKDEKI--AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEIL 175

The following BLAST results are available for this feature:

BLAST of TCONS_00026147 vs. Swiss-Prot (Human)

BLAST of TCONS_00026147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LGUL	8.182e-23	37.09	Lactoylglutathione lyase OS=Homo sapiens GN=GLO1 P...	[more]

You are here

TCONS_00026147 (transcript) - C. hemisphaerica