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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026166 ID=TCONS_00026166|Name=TCONS_00026166|organism=Clytia hemisphaerica|type=transcript|length=1487bp
AGGAGATTTTATATTCATATTTAGAAAGTTTTCACAAAGTTGATGAAAAA
GTACGTGTAAAAATTGCAAGTGATATCAGTGCTGTGATAAAAGAAGAGCC
TAATTCTCCGGATATGTTTCTAACTGGAAGCTCAAAAGAAGGGTCATTTT
TGGTGTCTTTTATGATTCCTGTAGAAAACAAAAACCCTGACATTGATATA
ATGGCCGTAGTAGACGTAGATGGATTTACAGAAGTGATATCTTCTTCATT
AGCGGAAACAGACTATCCAGGCTACTACATCATCAAACAAATACCGGAAG
AGTGTGAAGAAAtaacattttccttttttaaaggTGAATGTTCGCTTATT
AAAGATATAGCATCACCGTTCATTGAGATTGATCTGCAAGATTTGAAGTT
TGAGAATGGATGTCCGTCAATAACTGGGTTTTTCTCTATTTTCTATGATA
AAGTAAATGAACCGGAGGAAATGTCAACTGAGGAGCtttgtttgtttaaa
atattagaaaaaatgATGGTTGACATGGTGCTAAGTTTACGAATCAACTT
CTGGCCAGAAATAACAGCAGAATGGTTCACGAGAGACCGATATTGGCCGG
ATCCACTGACTATATGTGAAATTCGTGAAGTAGGATGTTGTTTAGTTCGA
AAGGCGATTGGAAGTGAAGAACGAACGTGGAGATTATCTTTTTCTGAAGC
TGAAGTTATCTTGGCAAGTAAACAAACTCGTTTTCAAAAGACGAGCTACT
TATTGGCCAAGGTAATTTTTACTTTGGAAACCCATGCTCTTTTTGATGGA
GAAAAAGATCGAAAATTATCTTCGTATCTCCTTAAAACTGTTTATCTTTT
CACAATAGAAGAAACACAACCAGAAGAATTGGAGCAACTTGAACAATCTC
GAGATTATTTAGGATTTGTATCAATGATGTTCGAAAGGTTATCACAAGCC
TTTAAAGCTGGTTATCTGCCTTGCTTTTTTGTACCTGTGATGAATCTTTT
ACATGGTTTTAATGAAAACTTCCTAAATGATGTGGCAGATCAGTTTGACG
ATCTTTTCAAAAACGAAGATGCTTTAATTGAAAAACTTGTTGAGAGTTTC
AAGAAGAATCAAATCTTGACACTTTACTCTGAAGAATCTACCCACACATC
AGAATCGACCTGAATGACCAGAACATTGACTGATTCTTGCATTCACCCAA
ATATAGTTATAATTATTACAACAAGAAATTTGTACGAGtttcaatcccac
aattcatTTCAAATGATGAAAAACCGGAAAAGttgttacagtatgtggcc
cccaaaacggcgatcaaatttgaaatttctctcaaatctagaggaaaaga
gattttacaaaagtttttgctgcataaaaaactttaacaactctacttta
tttcctggaagttttttttcaaaattttcaatttcaacaatatttttcaa
tcgcttaaagataggtagcttttttctaatggccccc Run BLAST on NCBI protein sequence of TCONS_00026166-protein >TCONS_00026166-protein ID=TCONS_00026166-protein|Name=TCONS_00026166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
EILYSYLESFHKVDEKVRVKIASDISAVIKEEPNSPDMFLTGSSKEGSFL
VSFMIPVENKNPDIDIMAVVDVDGFTEVISSSLAETDYPGYYIIKQIPEE
CEEITFSFFKGECSLIKDIASPFIEIDLQDLKFENGCPSITGFFSIFYDK
VNEPEEMSTEELCLFKILEKMMVDMVLSLRINFWPEITAEWFTRDRYWPD
PLTICEIREVGCCLVRKAIGSEERTWRLSFSEAEVILASKQTRFQKTSYL
LAKVIFTLETHALFDGEKDRKLSSYLLKTVYLFTIEETQPEELEQLEQSR
DYLGFVSMMFERLSQAFKAGYLPCFFVPVMNLLHGFNENFLNDVADQFDD
LFKNEDALIEKLVESFKKNQILTLYSEESTHTSEST Run BLAST on NCBI transcript from alignment at sc0000563:26754..28240 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026166 ID=TCONS_00026166|Name=TCONS_00026166|organism=Clytia hemisphaerica|type=transcript|length=1487bp|location=Sequence derived from alignment at sc0000563:26754..28240 (Clytia hemisphaerica)
gggggccattagaaaaaagctacctatctttaagcgattgaaaaatattg
ttgaaattgaaaattttgaaaaaaaacttccaggaaataaagtagagttg
ttaaagttttttatgcagcaaaaacttttgtaaaatctcttttcctctag
atttgagagaaatttcaaatttgatcgccgttttgggggccacatactgt
aacaaCTTTTCCGGTTTTTCATCATTTGAAatgaattgtgggattgaaaC
TCGTACAAATTTCTTGTTGTAATAATTATAACTATATTTGGGTGAATGCA
AGAATCAGTCAATGTTCTGGTCATTCAGGTCGATTCTGATGTGTGGGTAG
ATTCTTCAGAGTAAAGTGTCAAGATTTGATTCTTCTTGAAACTCTCAACA
AGTTTTTCAATTAAAGCATCTTCGTTTTTGAAAAGATCGTCAAACTGATC
TGCCACATCATTTAGGAAGTTTTCATTAAAACCATGTAAAAGATTCATCA
CAGGTACAAAAAAGCAAGGCAGATAACCAGCTTTAAAGGCTTGTGATAAC
CTTTCGAACATCATTGATACAAATCCTAAATAATCTCGAGATTGTTCAAG
TTGCTCCAATTCTTCTGGTTGTGTTTCTTCTATTGTGAAAAGATAAACAG
TTTTAAGGAGATACGAAGATAATTTTCGATCTTTTTCTCCATCAAAAAGA
GCATGGGTTTCCAAAGTAAAAATTACCTTGGCCAATAAGTAGCTCGTCTT
TTGAAAACGAGTTTGTTTACTTGCCAAGATAACTTCAGCTTCAGAAAAAG
ATAATCTCCACGTTCGTTCTTCACTTCCAATCGCCTTTCGAACTAAACAA
CATCCTACTTCACGAATTTCACATATAGTCAGTGGATCCGGCCAATATCG
GTCTCTCGTGAACCATTCTGCTGTTATTTCTGGCCAGAAGTTGATTCGTA
AACTTAGCACCATGTCAACCATcattttttctaatattttaaacaaacaa
aGCTCCTCAGTTGACATTTCCTCCGGTTCATTTACTTTATCATAGAAAAT
AGAGAAAAACCCAGTTATTGACGGACATCCATTCTCAAACTTCAAATCTT
GCAGATCAATCTCAATGAACGGTGATGCTATATCTTTAATAAGCGAACAT
TCAcctttaaaaaaggaaaatgttaTTTCTTCACACTCTTCCGGTATTTG
TTTGATGATGTAGTAGCCTGGATAGTCTGTTTCCGCTAATGAAGAAGATA
TCACTTCTGTAAATCCATCTACGTCTACTACGGCCATTATATCAATGTCA
GGGTTTTTGTTTTCTACAGGAATCATAAAAGACACCAAAAATGACCCTTC
TTTTGAGCTTCCAGTTAGAAACATATCCGGAGAATTAGGCTCTTCTTTTA
TCACAGCACTGATATCACTTGCAATTTTTACACGTACTTTTTCATCAACT
TTGTGAAAACTTTCTAAATATGAATATAAAATCTCCT Coding sequence (CDS) from alignment at sc0000563:26754..28240 >TCONS_00026166 ID=TCONS_00026166|Name=TCONS_00026166|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at sc0000563:26754..28240 (Clytia hemisphaerica)
TCAGGTCGATTCTGATGTGTGGGTAGATTCTTCAGAGTAAAGTGTCAAGA
TTTGATTCTTCTTGAAACTCTCAACAAGTTTTTCAATTAAAGCATCTTCG
TTTTTGAAAAGATCGTCAAACTGATCTGCCACATCATTTAGGAAGTTTTC
ATTAAAACCATGTAAAAGATTCATCACAGGTACAAAAAAGCAAGGCAGAT
AACCAGCTTTAAAGGCTTGTGATAACCTTTCGAACATCATTGATACAAAT
CCTAAATAATCTCGAGATTGTTCAAGTTGCTCCAATTCTTCTGGTTGTGT
TTCTTCTATTGTGAAAAGATAAACAGTTTTAAGGAGATACGAAGATAATT
TTCGATCTTTTTCTCCATCAAAAAGAGCATGGGTTTCCAAAGTAAAAATT
ACCTTGGCCAATAAGTAGCTCGTCTTTTGAAAACGAGTTTGTTTACTTGC
CAAGATAACTTCAGCTTCAGAAAAAGATAATCTCCACGTTCGTTCTTCAC
TTCCAATCGCCTTTCGAACTAAACAACATCCTACTTCACGAATTTCACAT
ATAGTCAGTGGATCCGGCCAATATCGGTCTCTCGTGAACCATTCTGCTGT
TATTTCTGGCCAGAAGTTGATTCGTAAACTTAGCACCATGTCAACCATca
ttttttctaatattttaaacaaacaaaGCTCCTCAGTTGACATTTCCTCC
GGTTCATTTACTTTATCATAGAAAATAGAGAAAAACCCAGTTATTGACGG
ACATCCATTCTCAAACTTCAAATCTTGCAGATCAATCTCAATGAACGGTG
ATGCTATATCTTTAATAAGCGAACATTCAcctttaaaaaaggaaaatgtt
aTTTCTTCACACTCTTCCGGTATTTGTTTGATGATGTAGTAGCCTGGATA
GTCTGTTTCCGCTAATGAAGAAGATATCACTTCTGTAAATCCATCTACGT
CTACTACGGCCATTATATCAATGTCAGGGTTTTTGTTTTCTACAGGAATC
ATAAAAGACACCAAAAATGACCCTTCTTTTGAGCTTCCAGTTAGAAACAT
ATCCGGAGAATTAGGCTCTTCTTTTATCACAGCACTGATATCACTTGCAA
TTTTTACACGTACTTTTTCATCAACTTTGTGAAAACTTTCTAAATATGAA
TATAAAATCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026166-exon-sc0000563-1491911889:26754..28240 | TCONS_00026166-exon-sc0000563-1491911889:26754..28240 | Clytia hemisphaerica | exon |
| TCONS_00026166-exon-sc0000563-1510915933:26754..28240 | TCONS_00026166-exon-sc0000563-1510915933:26754..28240 | Clytia hemisphaerica | exon |
| TCONS_00026166-exon-sc0000563-1575043694:26754..28240 | TCONS_00026166-exon-sc0000563-1575043694:26754..28240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000563 | supercontig | sc0000563:26754..28240 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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