TCONS_00026202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026202
Unique NameTCONS_00026202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026202 ID=TCONS_00026202|Name=TCONS_00026202|organism=Clytia hemisphaerica|type=transcript|length=514bp
ggagaaagaagctgaaGAACATGAAAATATCTATTCCTATTTTAATGAAT
AGAAGAGAAGAAGgtgccaggattacaaattcaacaaagtttgacaacCT
CTACAGCTGACAATACAACGTAACTTGCTGACAATGATATTATGATAATG
TTGCACATaatgaaaatacaaacaaaGACAAACATTCTTGCAATAATTGG
ACCAAGGAACTCTAGTGTTCCAAGAACTATCCCAAAATGACTATCAACAA
ATAACGCGTATTTTTACGGACAAAAAAACGTTGGATAGAAGAGCCATCTT
TAAGGAGGTCGGGGGTTTTCGACAGCTCTCCATTGATCCACGGCAATCAT
TAACCGTGGAAAAAATGGCAGAACATGTTGGTCGCCAGCTGGTTGAAAAT
AAGATGGTGGTGGTCACCAGAATACCAATTGAAGAAAATGATGATGTTAT
TATAATAGCTAAATAactaaaaattttatattttattttttttatatttt
attgcgTCTTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000564:213549..220076-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026202 ID=TCONS_00026202|Name=TCONS_00026202|organism=Clytia hemisphaerica|type=transcript|length=6528bp|location=Sequence derived from alignment at sc0000564:213549..220076- (Clytia hemisphaerica)
GGAGAAAGAAGCTGAAGAACATGAAAATATCTATTCCTATTTTAATGAAT
AGAAGAGAAGAAGGTAAGCATAAATTTCTTTCTGATTTCATGTATATTGT
CTAGATATTAATGATCAAAACTTGGAAAAGCTTGCACTTTTATTTGTGGC
CCATATATTTAGCCTCTTGTCTTGATGTCTGTTGCTAAAGAAAACTAGAT
GTTAAAATATCCCTGTCGCCTGTGTACCTTTTTGTATGTTCCCCATGTAA
CTTTTGTATATATGCTCCCTGTGTACCTTTTTGTACATTCCTGTGTACCT
TTTGTATGCCCTGGATAGGTCCTTTTTGTGTGTTCCCGGGTGCCTTTTTA
TACACTCCCCATGTACCTTATATTGTACGTTCCCAATGCCGGATGCGCAG
ACTTTAGATTTCATAGGCTTACACAAAGGCTACACCAAGAAATCTCTGGC
GTAAATATTCTCTTCTTTCCAGACTGGGTACGTTCCCGTGTACCTTATTG
TACGTTCCCCGTGTGTACCTTATTGTACGTTCCCTGTGTACCTTATTGCA
ATTTCCTGTGTACCTTATTGTACGTTCCTCGTGTACCTTATTGTACGTTC
CCCGTGTACCTTATTGTACATTCCCCGTGCACCTTATTGTACGTTCCCTG
TGTACCTTATTGCAATTTCCCTGTGTACCTTATTGCAATTTCCCCATGTA
CCTTATTGTACGTTCCCCGTGTACCTTATTGTACGTTCCCCGTGTACCTN
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NNNNNNNNNNNNNNNNNNNNNNNNAATGGTGCTGGTGAATTCAATGTTGG
AATCAATGGTGCAGGTGACTGAAATGATGGAATCGATGTTGCTGGTGAAT
GCAATGATGGTGTTACTGGTGAATGCAATAATGGAATCAATGGTGCTGGT
GAATGCAATGGTGGAATCAATGGTGCCAGTGAATGCAATGATTGAATCGA
CGTTTTGAAAACCAAGAAAGACACCTTCCTTGTAGTGACACCTTCCTTGT
AGTACATGGTTCCTTAGTACTTATCTTCAAAAACATATATTTGAAAAGTA
CAAAATGGTCACTATACTGACCCCCCCCCTCTAGGAAGTACTCTGCAAAA
GACATTAGCATCCTGCTAGTTATTTTTCGAAAACTAGCATTCTGCTGATT
TCTTTTATCGAAAACCTTACTTGATCTGCTTGATATTCTCAAGAGATACG
AAGTATTTTCGTTTTCGTTTTCTAAGTTTTGATAACGAAAGTACTTCAAA
GCTCGAGATAGCAAAATTTTTAGACCATGATTTTGACCTTTTTCTTAATC
ACCATAAAATTTCTGATCGATTGGTATAGTCCATACTTCATGATCAAAAG
GAAAAAAATGGCTATACGCGGATGTTCATAGGAAACCTAACTCAGAGTAA
AAACTTTAACCCGTCCAAAACTTTTAGCCGAAATTTTTTACCTTAACCAA
AAGACTTTGGTCGGGGATAAGTGACGAAAATGCCTCTGAGTGACAGAATT
TTTCCCCGACTAATTCAAACTCCAATATTTTCCCCCGATAAGACTTAATT
TTAGACGCCTTGTCGAGTTTGCTTTGCTCAAAACTGAACACTTTTCCTAC
TTTTAGTCAGTTACAGTAAATAGATCAAAGTTTAGTTAGTTTGAAAAGAT
TTAAAAGTTAATTAAAACTTACAATTACAATAGGAGTGATAGTCTCTGAA
TCCATTTTAATCACGTCTTCACTGTTTCTCTTGTCTTTCCGAATGCACGT
TCTCTACTTTCTGTATTTTCTCTTTCTTTATTCAGCTTTATTAAAAATAA
TATTATTAGCTAACAGTCTTCGAGGGGTAGAATACGGGATATATTGGGTC
AGTAAAATCCGTATTGGGCGAGGCTTTGCCGAGTCCCAATACATATTTTA
CTGTCTGATCCCAATATATCCCGTATTCTACCCCTCGAATAACTTTCAAT
AGCTTTAAAACACGTGGCTTTTATAATTTTACCCCTCAGTCCTCAGGGCC
ATTGTATTAACTAGCACCATTAATTCCAGCATTGAATTCACCAGTAACGT
TGATGCCATCATTGCATTCACCAGCACCATTTATTCCACCATTGCATTCA
CCAGTAACACCATCATTGCATTCACCAGCAACATCGATNNNNNNNNNNNN
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NNNNNNNNGTTACCCCTGTTACCCATGTGTTACCCATGTGTTACCCCCTG
TTACCCTAGTGTTACCCCCTGTTACCATGTGTTACCCTGTGTTACCACTT
TTAGTAACAACGTTATTGTACGTTCCCCGTGTACCTTATTGTACGTTCCC
CGTGTACCTTATTGTACGTTCCCCGTGTACCTTACTGTACGTTCCCCGTG
TACCTTATGTACGTTCCCCGTGTACCTTATTGCAAGTTCCCCGTGTATAC
CTTATTGTGGGATTTTCTGGAGTTTTTATAAGATACTTCACTAATTGGTC
ATTGAAAGTAAAAGAGATGACGCGTTCTTTAGAAAAAGTAACAAAATTGT
TTTATTACAGGTTAACGACCAACCAAATCAAATAAGAGCTTGTAAAAACC
CCAGCTTGTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA
CTTCTTCAATGGCTCAGTATATATGCATGGAAAACATAGCCCTAACCATC
AAGCAGAGTCTCACACCTTAGAGTCTTTTTTTCTCAGGAGATTTTAGCGA
CACATTTGGCATTGATTCCTTTGAAAGAGATTATTTCCCATTATGTAATT
TTGGTTTTTTTTTTCCTTTCACATTCAGGTGCCAGGATTACAAATTCAAC
AAAGTTTGACAACCTCTACAGCTGACAATACAACGTAACTTGCTGACAAT
GATATTATGATAATGTTGCACATAATGAAAATACAAACAAAGACAAACAT
TCTTGCAATAATTGGACCAAGGAACTCTAGTGTTCCAAGGTGTGATTTAA
TATCAATGATACAAATGTCATGGAGTTTCGTTTATGAAGACACAAATTTC
ACAAAAAAGATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAAGGATAAAGGCGTGGTTA
TTTCGTTATTTAGGGAAATTCCCTCTTTAGATATTCATTGATTTTTCAAC
AGTGTAACTTTGAAATGCTCTCCAGGCTTGGGGGATTGCTCAAATGACTC
CAAACCAATAACAGATGCAAGCTGACAGATATAGATACAATGCCTACCAA
CTTCAAAAAGGGCGTTGTTTTTTCGTGTTTTAGGGAAATTCCCCATTCAA
AATAGCTCATTTTTGTAATTTGGGGTGCTCTAGAAACTTAGGAAATGACT
TTAAAGACCCCAAGTCAAAAGTGGATGCAAGCTTACATGAATATAAACAA
TGCTGAATAAGTGGCATGCCTAGAGAGGGCGTAGTTTTTGCGTGTTTTAG
GGAAATTCCCTGAAATATTGATTTTTACCGTTTAAACTATTTTCAGCAGA
GAATCTTTGAAATACTCTTCAGGCTTGGGAAATTGCTCAAATAACTCCAA
ACTAAAAACGGATGCAAGCTGACAGTTATCACAGGAAAAAATCTTTAAAT
CCCAGGTCTGGGAAATGGTCATTTTCGGGGTGGGATTTTTTTTAGCCCTG
AGATTTTTTAAAGATTACATATGTCGATTAAATTTCGGGGGTGATTTTGG
CCATTTTACAACCCTGGGAAAATTTTTATGAAAAATTTCCCACCCCGAAA
ATGGGCATTTCCCAGGCCTGGGATTTCTCAGGGAGTAAAATGGTCATTTT
CGGGGTGGGATTTATTTTTCATAATTACTATAAGAAGGATATTTCAAGTC
AAGCTCTCACTTCAGTGGTATTGGTGTTGTAGTTGTTTTTTTATTATTTC
AACATATGCTATACATAATTATTCTTTTCTTTTCCTAGAACTATCCCAAA
ATGACTATCAACAAATAACGCGTATTTTTACGGACAAAAAAACGTTGGAT
AGAAGAGCCATCTTTAAGGAGGTCGGGGGTTTTCGACAGCTCTCCATTGA
TCCACGGCAATCATTAACCGTGGAAAAAATGGCAGAACATGTTGGTCGCC
AGCTGGTTGAAAATAAGATGGTGGTGGTCACCAGAATACCAATTGAAGAA
AATGATGATGTTATTATAATAGCTAAATAACTAAAAATTTTATATTTTAT
TTTTTTTATATTTTATTGCGTCTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014729XLOC_014729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026202-exon-sc0000564-1575043694:220014..220076TCONS_00026202-exon-sc0000564-1575043694:220014..220076Clytia hemisphaericaexon
TCONS_00026202-exon-sc0000564-1575043694:215138..215298TCONS_00026202-exon-sc0000564-1575043694:215138..215298Clytia hemisphaericaexon
TCONS_00026202-exon-sc0000564-1575043694:213549..213838TCONS_00026202-exon-sc0000564-1575043694:213549..213838Clytia hemisphaericaexon
TCONS_00026202-exon-sc0000564-1510915933:220014..220076TCONS_00026202-exon-sc0000564-1510915933:220014..220076Clytia hemisphaericaexon
TCONS_00026202-exon-sc0000564-1510915933:215138..215298TCONS_00026202-exon-sc0000564-1510915933:215138..215298Clytia hemisphaericaexon
TCONS_00026202-exon-sc0000564-1510915933:213549..213838TCONS_00026202-exon-sc0000564-1510915933:213549..213838Clytia hemisphaericaexon
TCONS_00026202-exon-sc0000564-1491911889:220014..220076TCONS_00026202-exon-sc0000564-1491911889:220014..220076Clytia hemisphaericaexon
TCONS_00026202-exon-sc0000564-1491911889:215138..215298TCONS_00026202-exon-sc0000564-1491911889:215138..215298Clytia hemisphaericaexon
TCONS_00026202-exon-sc0000564-1491911889:213549..213838TCONS_00026202-exon-sc0000564-1491911889:213549..213838Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000564supercontigsc0000564:213549..220076 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.870246	0.974249	0.423718	0.42834	1.69183	2.0916	0.945574	2.38027	4.28551	4.31567	7.32731	6.0501	5.12382	3.98144	3.16605	3.44429	3.23616	3.5991	6.67615	8.43386	4.62722	4.12217	1.7482	2.30156	2.34054	2.6485	8.87694	7.41464	10.6935	9.60417
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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