TCONS_00026204 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026204
Unique NameTCONS_00026204
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026204 ID=TCONS_00026204|Name=TCONS_00026204|organism=Clytia hemisphaerica|type=transcript|length=600bp
CACACATTTGCTGGTTGCTCACTTTCATGTGTGTTTTAACAAACtttcag
taaaataaaaaaggccTAAATCACAGCGCTCAGTACATGGCtgataaaat
taacaaaaaaagtgaaaaagaaaaagcaaagaatTGAGCTATACTATTCT
TTCGTTTAAatgatgtttatgttttttagcAATAGGTCTATAAGCCATTT
CTCAGTCGTTTAATTAATTAAGCCTTATAGCGATACGACGAGCCTGTTGT
TAAAATATTAAACTTTGTGTCTGAAAATTTCCTCCCATGAAGTGCATGTT
GTGTGGACCTGGAAGAAGATGAAATTGAATCTATTATTTGGAAAATTAGC
AAATCACTGTAAAAGCTTGTTTGAGAATGCAATAGAAATGTCAGCAACGA
CCAGCAGGTTATCTCAGAACGAGATACGATAGCTGACACGAAAGAGCTGT
TCAATCAAGctaaataataaagtaaataagtaagtaagtctgcgacggCA
GTCGGAGGCGGCCCAAAGGcttctctttcgatagctagCTACCCGGAGgt
ttaaaatttatatttcagATTCTGGTTActatacacaggaaaaaatgttc
Run BLAST on NCBI

transcript from alignment at sc0000564:30095..30694

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026204 ID=TCONS_00026204|Name=TCONS_00026204|organism=Clytia hemisphaerica|type=transcript|length=600bp|location=Sequence derived from alignment at sc0000564:30095..30694 (Clytia hemisphaerica)
gaacattttttcctgtgtatagTAACCAGAATctgaaatataaattttaa
acCTCCGGGTAGctagctatcgaaagagaagCCTTTGGGCCGCCTCCGAC
TGccgtcgcagacttacttacttatttactttattatttagCTTGATTGA
ACAGCTCTTTCGTGTCAGCTATCGTATCTCGTTCTGAGATAACCTGCTGG
TCGTTGCTGACATTTCTATTGCATTCTCAAACAAGCTTTTACAGTGATTT
GCTAATTTTCCAAATAATAGATTCAATTTCATCTTCTTCCAGGTCCACAC
AACATGCACTTCATGGGAGGAAATTTTCAGACACAAAGTTTAATATTTTA
ACAACAGGCTCGTCGTATCGCTATAAGGCTTAATTAATTAAACGACTGAG
AAATGGCTTATAGACCTATTgctaaaaaacataaacatcatTTAAACGAA
AGAATAGTATAGCTCAattctttgctttttctttttcactttttttgtta
attttatcaGCCATGTACTGAGCGCTGTGATTTAggccttttttatttta
ctgaaaGTTTGTTAAAACACACATGAAAGTGAGCAACCAGCAAATGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014731XLOC_014731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026204-exon-sc0000564-1491911889:30095..30694TCONS_00026204-exon-sc0000564-1491911889:30095..30694Clytia hemisphaericaexon
TCONS_00026204-exon-sc0000564-1510915933:30095..30694TCONS_00026204-exon-sc0000564-1510915933:30095..30694Clytia hemisphaericaexon
TCONS_00026204-exon-sc0000564-1575043694:30095..30694TCONS_00026204-exon-sc0000564-1575043694:30095..30694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000564supercontigsc0000564:30095..30694 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.998095	0.619373	1.23283	0.603066	0	0.0966925	0.116655	0.218423	0	0	0.459638	0.362578	0.0603456	0.188009	0	0	0	0	0	0.40373	0.0877286	0.128373	0	0.283752	0.0974191	0	0.248834	0.132781	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top