TCONS_00026205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026205
Unique NameTCONS_00026205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026205 ID=TCONS_00026205|Name=TCONS_00026205|organism=Clytia hemisphaerica|type=transcript|length=515bp
GACTGCTGTCTTTCTGTTTGTGGTGTATTTAGAAAGATATTCTTCCTTGC
TTTTTAGAGAAACACAGGGAAAGACGCATATTATTATTACCCTTGGAACA
GAAATGAACCTCCGCAACCCCCATGTANTTGCTTTTTTAGAGAAACACAG
GGAAAGACGCATATTATTATTACCCTTGGAACAGAAATGAACCTCCGCAA
CCCCCCTGTGCACTTTTTTCTTCTGGGGAACCCTAATTTGAGACTCTCAT
TTTCAGAAATATATAAACAACATCCTTGCTTCAACATCAACAGATAAAGG
CTATAAATAACTGAGATACACGTACCAAAGCAAGGTAAATATTCATCTGC
TTTTTTACTTAGTACAACATTATAAGAACAACAAGGCTAAAAAACGCcag
aaaaatgagaacaatttaagaacaattctaAGCTTGAACTTTAGGGTCAA
AGTAGAAAAAACAGAATAcaagaataaaaatatttcaatttcccccttga
aataaaaacaagata
Run BLAST on NCBI

transcript from alignment at sc0000564:30990..31504

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026205 ID=TCONS_00026205|Name=TCONS_00026205|organism=Clytia hemisphaerica|type=transcript|length=515bp|location=Sequence derived from alignment at sc0000564:30990..31504 (Clytia hemisphaerica)
tatcttgtttttatttcaagggggaaattgaaatatttttattcttgTAT
TCTGTTTTTTCTACTTTGACCCTAAAGTTCAAGCTtagaattgttcttaa
attgttctcatttttctgGCGTTTTTTAGCCTTGTTGTTCTTATAATGTT
GTACTAAGTAAAAAAGCAGATGAATATTTACCTTGCTTTGGTACGTGTAT
CTCAGTTATTTATAGCCTTTATCTGTTGATGTTGAAGCAAGGATGTTGTT
TATATATTTCTGAAAATGAGAGTCTCAAATTAGGGTTCCCCAGAAGAAAA
AAGTGCACAGGGGGGTTGCGGAGGTTCATTTCTGTTCCAAGGGTAATAAT
AATATGCGTCTTTCCCTGTGTTTCTCTAAAAAAGCAANTACATGGGGGTT
GCGGAGGTTCATTTCTGTTCCAAGGGTAATAATAATATGCGTCTTTCCCT
GTGTTTCTCTAAAAAGCAAGGAAGAATATCTTTCTAAATACACCACAAAC
AGAAAGACAGCAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014732XLOC_014732Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026205-exon-sc0000564-1491911889:30990..31504TCONS_00026205-exon-sc0000564-1491911889:30990..31504Clytia hemisphaericaexon
TCONS_00026205-exon-sc0000564-1510915933:30990..31504TCONS_00026205-exon-sc0000564-1510915933:30990..31504Clytia hemisphaericaexon
TCONS_00026205-exon-sc0000564-1575043694:30990..31504TCONS_00026205-exon-sc0000564-1575043694:30990..31504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000564supercontigsc0000564:30990..31504 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27534	0.791421	1.70656	0.770584	0	0	0	0.139548	0	0	0	0.231647	0.0771083	0.160155	0	0	0	0.178418	0.246494	0.128969	0	0.328064	0	0.120857	0.37344	0	0.476932	0.508994	0	0.131109
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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