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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026229 ID=TCONS_00026229|Name=TCONS_00026229|organism=Clytia hemisphaerica|type=transcript|length=769bp
ATTCGATCAGACTTTTGGGTTCCCTTTTTTTTGGAGAATATTTcctattt
gaaattttatttatatCAGCATGTCGTTAGCCCCCGTGCTCTTCCAATTA
ACATTCTCAGCAGATTTAACAAACAAATCAATGAATAAAAGCAACAACGC
ATGAGACGTTTAGCTACATTGAGCTTCAAACGTTAAAAAAGCTTCAGTGC
TCACTGCGAAAATCTGAAATGAAGACTTTAATCTTGCTTGTAGCTTTCTT
CATTGGAGTGGCATCCGTCTGGACTTGCCAAGACAATGCACCTCACCATT
GCAATAGATATTCCCCTGAAGACTCTTGtcatttcaatttcttgaaataC
AACTGTAGAAAGATGTGTGGCTATTGTGGAATAACACCAGGTTGTGTTGA
TAACAGTGAGAGATGTGAAAGGTATGCTGCAATGCCAGGAAATTTATGTG
AAAACAATGCCTTCGTTAGACGGGTTTGTAAGAAAACATGCATCTGTGAT
CAAGCCTAATCAAAATTGGATGACAATTATGATTGGTGATAAACATTGCG
TAAAGTTGTAACCATTTGTAAACCTCAAAAATCTTATATTACATATTTCT
ACCTAAGAGTTATTTAATAGAAACTTTGCAAAAGTGGTGTCCTTTACTTC
TTGATGACTATTGATGGCCTTTCCATCAACACCCAGAATAAGTTAGTATA
TAGATTTAACCTATGTTTTAAGATTTGAGACATATTTGTGTACCGTTGAT
CCAAagcgaaaaatcgacc Run BLAST on NCBI transcript from alignment at sc0000565:100552..103585+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026229 ID=TCONS_00026229|Name=TCONS_00026229|organism=Clytia hemisphaerica|type=transcript|length=3034bp|location=Sequence derived from alignment at sc0000565:100552..103585+ (Clytia hemisphaerica)
ATTCGATCAGACTTTTGGGTTCCCTTTTTTTTGGAGAATATTTcctattt
gaaattttatttatatCAGCATGTCGTTAGCCCCCGTGCTCTTCCAATTA
ACATTCTCAGCAGATTTAACAAACAAATCAATGAATAAAAGCAACAACGC
ATGAGACGTTTAGCTACATTGAGCTTCAAACGTTAAAAAAGCTTCAGTGC
TCACTGCGAAAATCTGAAATGAAGACTTTAATCTTGCTTGTAGCTTTCTT
CATTGGAGTGGCATCCGTCTGGAGTAAGTAAATCtgaatatgaaaatata
aaaatgcaTATATTCTCATATAAAGCTTTAACCGATGCATCGGAAAGAAG
TCTTGAAAAAGGGTGTCACGAGAAAGCTTACGTCCCACAACTAAGTGACT
ATTTGTACTAATTCTTGTTTTGTTATGTCCTTTCTGTAAGATCCTCGATT
TGCAGTCTTTAGAATGGACACCCAAGGATTCAATGCAATAGCAGTGAGAA
GATTTCCAGGACAAAATCCATGGATATCCTCAATCTTTTTATCCCCTTGG
ACATCCAGGGGTGTCTTTTTCAGGTCGGACATCCAAGGAGTCATTATCTT
TATGCCTGACATCTAGGGGACTGCGGAACTCGAAGAATGGTTATCCTGGG
GGCGAtggaaaatttctgaaaaagcccAATACACTTTACAAGTCATttct
ttgattaaaaaaaacatttgcgTTAATTTTTAGCTTGCCAAGACAATGCA
CCTCACCATTGCAATAGATATTCCCCTGAAGACTCTTGtcatttcaattt
cttgaaataCAACTGTAGAAAGATGTGTGGCTATTGTGGAATAACACCAG
GTATGATCTGATTGAAGTTTGTACAACAAGTGAAAAACTATATACTGTAT
TGAACCAAATGCTTTAAAATGAGAATATACTAGCGTTTACCAAAGGGGAG
TTAATTAGTGGAAGAAATATTAGCACCGTATCTATataatcatagtataa
gaaagccgcggctgacAGCTGGAaggataacatctgaatttctgttgttc
tatctttGTCGTATCTGATGAcaatttgttgatcaagaaatcagtaatgt
agcatctttaatggtaaattttattggtttttcaTTAATACTTAATTGTC
AGTgcgttttaaaatttcaaaaactatcgaccaaaaataaactgagcatc
ttgatgttcttataatgcTAGGAGACaaagatggaacagcaattaactga
aaagacaatgcggtacatattccagccgcggctttcttatactatgatgt
AATAATAGACGTATATATCTGAGGCCTTtttgcagtttgttttcactaCA
ATCAAGGCCCAGGGGCAGtaggtttaccaactgacggtatgtgtggcaaa
aaattggtttttagagtcgcacccttacagtgcagcaaaataTCTGAGAA
ATTCATACCCTTTCAgtgtattttctcaaatttttaacTATCTTTGAtag
taaaaaatttaaaattttcgagcaaaactttgcaattttcccTGGATTTG
CTGgaaatttccacccatacagtgcatttctgctatCTTGAAAAACCCTT
AACGGCCGCATATATCCGctggtcaatttgcctgaccgCCTCCCCCTCCC
ggaatcaaggtcataatatttgagaaaaaagggaaatccccacgaaatct
tatagaCACAGGACCTTTTTAGGACCTTATCAATTCAGATTCTTTTTTGC
TcgaaaagctttttgatattgtatTGACACTGATGTGGGGCAAGATTAgt
caaaaaggaaaagaaaatcattatATTTCTGGTATCAGAAAAATATTACA
ATAAACAGACACtgccctgatatgaaacatgtgccTGATATGAACCGGGA
acatatgtaaaaataaaacctttaaggctCAGAATAGAAGTCTATAAACC
ATTCCCAAATTAAAATATTCGACTACATTTTTAACAAATAGCCCAAAAGC
AattttctcgcccgaacttcaaATTGAAAGTATTTAGTATCTTCGAAGGT
TTTGTAACAGGGAATACACTGATATATAAAAAGCTATTTAAAGTATCTTA
Taggcccttttaacgccggccctttttacgctaaaagctcaaaaataaag
ccaataagggccggcgtaaaaagggccgataaggtactctTAATAATGAT
AGTCGTTAAAGCAACGCCAATCTCCTACCTAGATCCACTTGCACctcgtt
tttgattttgctaatgAGCTTTGATGGTTTCTTTCATGAGTGCTATTACA
ACtataaaaaaagtgaacaaagggactgggttcgagcaaaaccatttctt
ttcattcaatagttatgtacacgttttttataagaacaaactatataaga
acataaggcttcgctggccaaaatgttaagaacaagttaagaacatttta
aggctctgtggactaaaaaacattttatttcttaggaaatttgTTGCAAA
GATattcacaaaaatgtcaaaataagagcatgttgttaagaacattttag
gcttaaaacttaaaaagttaagaacatccaaatacttcaaaaactttgga
tgttcttataaaaaaacgtgtatgtgtaCTTCTGTATTTTGTGTTTCATT
TATAGGTTGTGTTGATAACAGTGAGAGATGTGAAAGGTATGCTGCAATGC
CAGGAAATTTATGTGAAAACAATGCCTTCGTTAGACGGGTTTGTAAGAAA
ACATGCATCTGTGATCAAGCCTAATCAAAATTGGATGACAATTATGATTG
GTGATAAACATTGCGTAAAGTTGTAACCATTTGTAAACCTCAAAAATCTT
ATATTACATATTTCTACCTAAGAGTTATTTAATAGAAACTTTGCAAAAGT
GGTGTCCTTTACTTCTTGATGACTATTGATGGCCTTTCCATCAACACCCA
GAATAAGTTAGTATATAGATTTAACCTATGTTTTAAGATTTGAGACATAT
TTGTGTACCGTTGATCCAAagcgaaaaatcgacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026229-exon-sc0000565-1491911889:100552..100824 | TCONS_00026229-exon-sc0000565-1491911889:100552..100824 | Clytia hemisphaerica | exon |
| TCONS_00026229-exon-sc0000565-1510915933:100552..100824 | TCONS_00026229-exon-sc0000565-1510915933:100552..100824 | Clytia hemisphaerica | exon |
| TCONS_00026229-exon-sc0000565-1575043694:100552..100824 | TCONS_00026229-exon-sc0000565-1575043694:100552..100824 | Clytia hemisphaerica | exon |
| TCONS_00026229-exon-sc0000565-1491911889:101285..101401 | TCONS_00026229-exon-sc0000565-1491911889:101285..101401 | Clytia hemisphaerica | exon |
| TCONS_00026229-exon-sc0000565-1510915933:101285..101401 | TCONS_00026229-exon-sc0000565-1510915933:101285..101401 | Clytia hemisphaerica | exon |
| TCONS_00026229-exon-sc0000565-1575043694:101285..101401 | TCONS_00026229-exon-sc0000565-1575043694:101285..101401 | Clytia hemisphaerica | exon |
| TCONS_00026229-exon-sc0000565-1491911889:103207..103585 | TCONS_00026229-exon-sc0000565-1491911889:103207..103585 | Clytia hemisphaerica | exon |
| TCONS_00026229-exon-sc0000565-1510915933:103207..103585 | TCONS_00026229-exon-sc0000565-1510915933:103207..103585 | Clytia hemisphaerica | exon |
| TCONS_00026229-exon-sc0000565-1575043694:103207..103585 | TCONS_00026229-exon-sc0000565-1575043694:103207..103585 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000565 | supercontig | sc0000565:100552..103585 + |
Blast
The following BLAST results are available for this feature:
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