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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026250 ID=TCONS_00026250|Name=TCONS_00026250|organism=Clytia hemisphaerica|type=transcript|length=2216bpRun BLAST on NCBI protein sequence of TCONS_00026250-protein >TCONS_00026250-protein ID=TCONS_00026250-protein|Name=TCONS_00026250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=670bp DNPPTLVGIPLNNGLCNIRYQNCLRTRVIGRNFVNSAKLTCGTKTLTFDSRun BLAST on NCBI transcript from alignment at sc0000565:24076..28786- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026250 ID=TCONS_00026250|Name=TCONS_00026250|organism=Clytia hemisphaerica|type=transcript|length=4711bp|location=Sequence derived from alignment at sc0000565:24076..28786- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000565:24076..28786- >TCONS_00026250 ID=TCONS_00026250|Name=TCONS_00026250|organism=Clytia hemisphaerica|type=CDS|length=20130bp|location=Sequence derived from alignment at sc0000565:24076..28786- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00026250 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 100.908 bits (250), Expect = 1.070e-21 Identity = 83/308 (26.95%), Postives = 135/308 (43.83%), Query Frame = 3
Query: 36 NNGLCNIRYQNCLRTRVIGRNFVNSAKLTCGTKTLTFDSN-LKPAQPV--ASVLRTSRSQMLSFAELSCEIPT--QQLPLVDIDFSSTRKGKPLGGVSIQLSNDGYAFSKNISRFVVYDSKCIQCA--DEDNCRWKVNSCRVNNYCLAVDEPHSMDWCQICR---GNNTFIERSDNLAPAFRSGSAQ-KVFNGQTLRFAVPVIDPEQKRLVYNFVGIIPKNMEISTAGIITWKPIKANESYNVTIKATDICGSTSQATYKFESVHCICEELNGAKCGAYPNVT-------CHCPKGCKGENCTQDIQG 905
N G C+++ NC+ RV G+ F + C L ++S+ P +P+ +V SR+ + C++PT QQ +D+ GKP G +++SNDGY FS N V+YD C C D+C K N C ++ C + + C ICR T+ +N P ++ + + F G+ + DPE + + + P+ +S+AG+ WK + +T++ D C + ++ T + C C LNG C + N + C C G G C DI G
Sbjct: 931 NAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNSSEWMPGEPIYTQTVFHNSRA-------VDCQLPTDVQQFDTMDL-----VGGKPTGKWQLKVSNDGYKFS-NPKITVIYDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSDIHFT-LDSGPEGASVSSAGLFMWK-TDLLTTQQITVRLNDDCDAETRVTIEVTVKSCDC--LNGGSCVSDRNFSPGSGVYLCVCLPGFHGSLCEVDISG 1221 The following BLAST results are available for this feature:
BLAST of TCONS_00026250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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