TCONS_00026251 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00026251
Unique Name	TCONS_00026251
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2098

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000565:30491..37264-

transcript sequence

>TCONS_00026251 ID=TCONS_00026251|Name=TCONS_00026251|organism=Clytia hemisphaerica|type=transcript|length=2098bp
CCTGTACTGCTAAATTTCCTAAATTGAAGTCTGATCCATTTGTCACTGTT
GACGTACATGACTCTCGAATGAGATTCGTATGCAGCTTTGAACCAGAAGT
GATCAAAAACAATAACCAGTATAATGTCACGTGGTATGGAGTTACATCGG
ATGGACAACCACAGGTCTTATTTGAAGAAATGTTACAGAGTGCAGAAACT
AAATCATATTTGCAAAATACCAATAGTAAAAGACGACAGCAAACCTTTTG
CTTAAACCAAGATATATTCTGTGAAGTTCGCTCTTACTTTGTCGGTAATG
AAAAAGATGGCGTTGTAAAGAGAAGCAATAATTTCTATGCTGGTATCAAG
GTCAGTCCCACATCCTTAAAGCTCTCTGAGAGTGATCCACCAACGGAACT
TACTTTCACGTCAACTGTGCCAATAGTTTGCAATAAGGATACTGAAAATT
GTGGTGTTACATTGCGAATTGCACAAAAAGAAAACTTGGATGGTGCTTTG
GAGTTCTGTTCTTTATCGTAAGTTAtaacacacccccttctcacagaccc
attcCATNACTTGGATGGTGCTTTGGAGTTCTGTTCTTTATCTTTCGAAC
CTGGTGAGGCCGGccaaacaaaaacaatgaaagTTGCTGCATTGCGAGAC
TTTAGAAATGATGGTGACAAAgcattgaaaattaaatttaaaattcctAT
AACCCCAAACCCTCTTGATTGGGATTGTCATCCCAATATTCCTGATGTTA
CGGTGCTCACTAAAGATGTAACAACAGCACAATGTCAATCAACTGGGGAT
CCTCATATCAGAACCTTTGATGGACGTTATTTTGATCATTACAAAGTCGG
TGATTATGTACTTGTTAAATCGGAAGCAAGATTATTTGAGGTTCATGTGA
GAACATTCCAATGTTGGTCCGTCTCGTGTAATTGTGCAGTAGCGGCTAGA
GAGGGAGATGATGTTATGGTTGTTGATATGTGTCGTGATAGAGTACCACG
TGCAAGGTTTGCTAGCACTGTTGAGCCTCAACCTGGAAGTATCATGGAAA
TGAGTCCCAATGGAAAAACATTTGTTTTCAACTTTCCTTCCGGGGCATCA
GTAAAATTTCAAGCTAATTCCTGGGGTGCTAATGTTTATGTTCAACTACC
TCCTGATGACTATGGAAAAACAAAAGGGCTTTGTGGCATATGGAATGGTG
ATCGAAGTGACGATCTTACCAGCAAAGATGGTCGCGAATTTCAAGGACGT
GGTATTGCCAATGTAGGTTTTACTGAGAGTTGGAGGTTTCAAACTGGTAC
TCGGGATAGTTTGTTCTACTATAAAGGACCAACAGAGCGTAAATGTTTGG
CTGAAAGAGTTCGAAACTATTGTTCTTGCAATGATATTGATGGTGATAAA
GATATCAGTTGCAATTTTGATGGTCTGAAGGACAAACCAAAATATATTGT
TGCCAATCAAGGTTACGCCGAATTAAAATTTCCtgGAGCGGACCACTGTG
GAAAACGACgccgaagaagaagaagaaatactGATGCAGAGGAACAACAA
GAACGACCAGTCATTATCTTGCCTGATGAAGATCCTGAAACGGCCATCTA
TGATTATAACCCAAAACAATTAACTGCACCACCTCCTTCATTCCCCACAA
AGACTGGTATTACTGAGCAACAAGCTGTGGATGGCTGTGAAAAAGCTCTC
AGAGATTCAACAAGTGGAAAGATTTGCTTAGAAGTTTTACCCGATTTCGA
TATATCCGCTTTTAAAGAGCAATGTGTCGCCGATATTATGATTCTTGGTG
ATATGAAGGTTCCACAAGCTTCTGCAGTCGAGGCTATGAAGGAGGAAtgt
gaagaaaaaacattaaaaaacatcACTTTATGGGAATCAGACGATAGTGG
AGTTCTTCAACCACCACAAGCTGTTGGTAACGCATTATGTCCANGTatac
gctcgtataaccacggacgattttcgcgggatttctttggattacgtcat
atatctttgtgtcctTAAGCTTCacagtttggattttttctttattttct
tataagcatatactttataagaagcaaatcaataactcttgatagacg

Run BLAST on NCBI

transcript from alignment at sc0000565:30491..37264-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00026251 ID=TCONS_00026251|Name=TCONS_00026251|organism=Clytia hemisphaerica|type=transcript|length=6774bp|location=Sequence derived from alignment at sc0000565:30491..37264- (Clytia hemisphaerica)
CCTGTACTGGTAAGTATGTTACACCTCTGTGTCACAGACGCGCTGGGACC
CAAGCCCCACAGTAAAATCTAGCAAAAATATTGTCCCCGGTAACAAATTA
ACCTTGAATTTTAGCCCAACTGGGAAATTGACTTATACTTCATCTTCACT
CGAAATTAAATGTTTAAAAATTGCACTCCAAAACCACGCCCACTTGATTT
TTTAACCTTGGAACAATAGAATTTCTATTCCCATTGGGATTTCAATATAC
ATTTTTATCCCCACTAAGGAAAAAAGTTCCATGGGTGTTGTTGAATCATA
ATGTCAAAAAATTGTTAACGATTTTGAGTGATCAGTAACTAATAATCTTT
TGATCATGTCAGAAATGAATTTCGCAGCCTTACTTCATAAAGATCATAAA
ACATTGCATTTGATATTTTACAGCTAAATTTCCTAAATTGAAGTCTGATC
CATTTGTCACTGTTGACGTACATGACTCTCGAATGAGATTCGTATGCAGC
TTTGAACCAGAAGTGATCAAAAACAATAACCAGTATAATGTCACGTGGTA
TGGAGTTACATCGGATGGACAACCACAGGTCTTATTTGAAGAAATGTTAC
AGAGTGCAGAAACTAAATCATATTTGCAAAATACCAATAGTAAAAGACGA
CAGCAAACCTTTTGCTTAAACCAAGATGTAAGTTTCAATTTTTTCAATGT
AAATATAATAAAAATCATTTAATATTAATGCACTCGTTTAAGGTCCACCA
ATTATTTTGATTTCCTTAGTCAGCTAAAACTAGAGATCGAAGATTTCCAA
ATTAGAAAATCCAAACAGTTGGGAAACGTTATCATGGAACGACAAACACT
ACATAAATGAAATTTAATCTAATAGTGTTCCTTTGCNGGGAAACTTTATC
ATGGAACGACAAACACTTTATAAATGAAATTTAATCTAATAGTGTTTCTT
TGCTCAAACCATGGATGAAACATTCTAAATGCGTTATCGTTGTGAAATAA
AAAAATATCATTCTGATTTATAGATATTCTGTGAAGTTCGCTCTTACTTT
GTCGGTAATGAAAAAGATGGCGTTGTAAAGAGAAGCAATAATTTCTATGC
TGGTATCAAGGTATATATGCTTTATGACTTTCTGGTCTTTTGAAATAATT
GTTTCATCACCTGTAATGACTGCAAAGACAATTGGATATTTCTTATTTCA
TTTTAAGGTCAGTCCCACATCCTTAAAGCTCTCTGAGAGTGATCCACCAA
CGGAACTTACTTTCACGTCAACTGTGCCAATAGTTTGCAATAAGGATACT
GAAAATTGTGGTGTTACATTGCGAATTGCACAAAAAGAAAACTTGGATGG
TGCTTTGGAGTTCTGTTCTTTATCGTAAGTTATAACACACCCCCTTCTCA
CAGACCCATTCCATNACTTGGATGGTGCTTTGGAGTTCTGTTCTTTATCG
TAAGTTATAACACACCCCCTTCTCACAGACCCACTGGGACCCCTTCCCAC
TGGAAAAATTTGCCAAAATATCGTTCCGGTGGAGAATTATCCTCCAATTT
TTGTCCCCATTGAAAATAATCGAATAAATCAATCCCTATAGTAAAATATT
TTTGCCCATCCCCACTGAATTTTCTGACTTGAAAACAAAATAATTAAAAT
TTTAAGCCATAAAAAATATAATCAAATTGATCCCAATCGAGTTTTAATCC
GTTATTTCATGAACATATAAACGACTGGACATATATCTTTTATTGTCTCT
TTGAAGAGAGCTTCGTTGCCGCCTGTATTTCAAAATTGGTATGAAAAATC
CGACAACATTCCGTCATAATTTTATTTCTTTGAATTATTTAGGTAAAAAG
ATTGATAGAGCATGAACATTACTCATAATGTACAAAAAAATTATTTTCGA
ATTTTTTTACAAGTTTGTAATATATTTTATTAACATTTTCAACTCTGAAA
TGCAGAATTTCAATTGCGTGTATACTTTTGAATCCCTTTTGTCACTCCAA
TGATTTTTTTTATGACTTGAAAAAAATAGCTTGCCAAAGTTGAGAGCCTG
TGTAATAAGAATATCGAAATTAGAATGTGACACTCTCTAAAATTATTAGA
CACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTT
AGAAATATTAGTCGGAGTTTTGACAAGCTGACGATAATTTTGCCTCTGTT
ATCTTTGTTATGATATAGATAAAAGACTTGAGAATAGTAGAACAACAGAG
ACTTTTGTCGAAGTTTTGACGTTGTTAGCAAGGTATTCCCAAGTGGTAAA
TCATCAAAATCTATTGTTCATTTTATGCTTTTAACGAGGCGGCAACGAAG
CTAGCTGTGTTATCTTTAAAAAGACAAAGGAGATGGATGTCCAGTCGTTT
ATATGTTCATGGTTATTTTTATCCCCACCGGCTGAAAAATTCCTACCGGG
TCTGTGAGAAAGGGTGTTATTGTGTGATTTGTTGAAATTTTGAGTATCAT
TCTTCAATTTCCCGGATGTGGATGGGAGTACTTAGACAAATGGATGGTAT
GGGTGTGCTACTCATAAGAGCGCCTTTTTTAAACCTGCAAAAAAAATTTC
AAAATCTAATTCCAGTCCCCCTTAACGGTTACGAAAAAGCAAAAAACAAA
TCAATATTTATCCTTAATAAGGTTAAATTTTACGAAAAAAGTCCCGGTAA
TATAATCGATTTTGGACCCTTCCGTCACTTCCGTCATTTCGCAAACCTAG
TACTCCCGGGTTTCAGTCAAAAAAGGCTGATTGTGTGATCATCCAAAGCC
TGTAACGATACTGAATTAATCAATTCCTTTAGTTTCGAACCTGGTGAGGC
CGGCCAAACAAAAACAATGAAAGTTGCTGCATTGCGAGACTTTAGAAATG
ATGGTGACAAAGCATTGAAAATTAAATTTAAAATTCCTATAACCCCAAAC
CCTCTTGATTGGGATTGTCATCCCAATATTCCTGATGTTACGGTAAGTCA
TTGTTTTTAATTCATCGACATCATAAGTTTAAGTCATCAACGTCAACAGA
GTGTATCAATTCCCCTAAAAGTCCTCCAGTATTATACTATTATACTTTAG
TTTTTTCGATATTCAACGGTATTTTCCCGGATTTTTCTATACTCATGACA
ATAGATGTAATCGGAGTTTTTGATTTTTCTAGAAAAGCGATGTATTGTGG
GATTGTTTTGGGGGTATTACAATAGCAATCTCTTAGGAATTCCTCTAGGG
AATTCTATTGTAATACCCCCGAAACAATTCTGCAATGCATCGCTGTTTTA
GAAAAATCAAAAACTCTGATAAGGTCTATTAAAGTGAAACAATAAACCAA
AAATTTATTATACACTAGATAAACGACTCATAAAACGATGGAGAGCGATC
ATTGTATTTTCATTGTTTCAGAAAACAATTGATGTTCTAGCTTTGTCCGC
AAAGGACAACTGTCATGGCGGCTCGAAGATGTCTGATTTTTAAAAAATGT
TTATCACTCTTGTTTTTAAAAAGTTCTCTAGCTCTTTCTTTTTGTACATT
TGCAGAAAAAAAAGTTTGAAAGTAAAGCTAGCATTCCAAGCTGGATACAT
TTGTGAAATCTAATGTGAGAAAAACATCAATAGACAAGAAATTCAGACAA
AATGCTTATAGTGACACGACATTTTCAATTGGAAATATCTTTCCAAGACT
GTCCCCAGAAGAGCTGAAATTAACATACATTAGACTTGAATGTCTTGGCT
CCACTGTGGTATGAAAATCCTTTGGAGGCACGTGGTGGCAAGGTGGTTTT
TTTGAGGTTGAACTTTGAAAATTTTCGGTATCAACATTAAATTTCTGATA
CACAACACCTCTTTTGCATCTTTCTCACAGCTTGAAACGTACATAACGAC
TTATAATTAGCAATTAAGTGGAAGAACCTGACTCTCACAGGAAAGTTTTA
AGTCTCTTTTGGGAATTGGATGAGTGATTTTCGATAAGAAATGCAATAAA
AATGCTTCGAAAGATCATTTAATGAGGGAAGGAGAGTGAACAATAATATT
ACTACTGCGGACATAGCTAGTACACGAGAAATCGGCAAAAATCTGTTACT
TGTATATCCAGTGTATAATAAATCTTTGAATAAACTTACTCGTACTCTCC
AAATTTCTTGATGGTCCCTTTGATAAGATTCTGACGAAACAACTCATATT
TGCGAGAGCAACTAACTTCAAAACTTTTAGCTGATTATTTTCTCTAATAA
AAACAAAGAATAGCTAAAGTAATAATGATAGATTTTGATTTGAACTACTT
TTTATGATAAGGTGCTCACTAAAGATGTAACAACAGCACAATGTCAATCA
ACTGGGGATCCTCATATCAGAACCTTTGATGGACGTTATTTTGATCATTA
CAAAGTCGGTGATTATGTACTTGTTAAATCGGAAGCAAGATTATTTGAGG
TAACCATTGGATAATTCCATTTTTAACGACTCTCATTCACAAGGACCAAG
TATTTTCACTTTAAAAAAAGTTAAAAAAAAATGATTTGGAGCTTATGTCA
AGTTCTGACAGGATGATATGTATTTTATCTATGTAGGTTCATGTGAGAAC
ATTCCAATGTTGGTCCGTCTCGTGTAATTGTGCAGTAGCGGCTAGAGAGG
GAGATGATGTTATGGTTGTTGATATGTGTCGTGATAGAGTACCACGTGCA
AGGTTTGCTAGCACTGTTGAGCCTCAACCTGGAAGTATCATGGAAATGAG
TCCCAATGGAAAAACATTTGTTGTGAGTATTTTCTATAGACTATGTTTTT
ACAAATGTAGCAAACGTCTTTAAGATTATTCAAACTATTTAAATACTTTG
GTTAGTTTGGTACCANTACAAATGTAGCAAACGTCATTAAGATTATTCAA
ACTATTTAAATACTTTGGTTAGTTTGGTACCATAATGATCATATCATCGG
TTTTAGATTTTTATGATATTTTTATCACCTTTAGTTCAACTTTCCTTCCG
GGGCATCAGTAAAATTTCAAGCTAATTCCTGGGGTGCTAATGTTTATGTT
CAACTACCTCCTGATGACTATGGAAAAACAAAAGGGCTTTGTGGCATATG
GAATGGTGATCGAAGTGACGATCTTACCAGCAAAGATGGTCGCGAATTTC
AAGGACGTGGTATTGCCAATGTAGGTTTTACTGAGAGTTGGAGGTAAGAA
TAAATTGAATTGTATTGAACTGCAAAGAAAATTCTTTTTAGTGTAGATAG
CAAAAATAAAAGATGCATATACCTAAGTTGAGACTCAATAGGAGTTCAAG
CATAGAGCTTAACAGCTAAACTTTATACAACTAAATTTTACAATATTTAG
GTTTCAAACTGGTACTCGGGATAGTTTGTTCTACTATAAAGGACCAACAG
AGCGTAAATGTTTGGCTGAAAGAGTTCGAAACTATTGTTCTTGCAATGAT
ATTGATGGTGATAAAGATATCAGTTGCAATTTTGATGGTCTGAAGGACAA
ACCAAAATATATTGTTGCCAATCAAGGTTACGCCGAATTAAAATTTCCTG
GTAAGTATTTATTTTGCCAACTGATAGGATATAAACCTTCCAACAATTGC
TTAAAATGGTACTACCCCGAAAGATAAGGAATCAGGGCGCCGAGTTAGGC
ATTGTGACTAGCTTGATGCAAGTAATTGTGCCTATATTCCCTATTAATTA
AGGTGGAGGTAAACCTTCTTGCAAAACAATCACTGTAACTGAGACTATAT
CGAAATCTTATCGACAGCTTCGACAACTCTTACGTATTTTCTAACAAGCT
TCGTCAAATGAATAATTTTTTCAAATAATTATATTCAAAATTTAGACATC
ATGTCAGGAACTTTCGTTTAATACGATATAACACTAGAATTATTCCTTCA
CAAGGAGCGGACCACTGTGGAAAACGACGCCGAAGAAGAAGAAGAAATAC
TGATGCAGAGGAACAACAAGAACGACCAGTCATTATCTTGCCTGATGAAG
ATCCTGAAACGGCCATCTATGATTATAACCCAAAACAATTAACTGCACCA
CCTCCTTCATTCCCCACAAAGACTGGTATTACTGAGCAACAAGCTGTGGA
TGGCTGTGAAAAAGCTCTCAGAGATTCAACAAGTGGAAAGATTTGCTTAG
AAGTTTTACCCGATTTCGATATATCCGCTTTTAAAGAGCAATGTGTCGCC
GATATTATGGTTTGTAATTTAATAAGTTCATTCGCAAGAAAAAAAATCTT
TTTGGAGTGTCAACTTTTCAGATCTCTGATAATTTTTTTAACTAAGACAA
AATCAAAACCTAATTCAAGAGAAAAATTTAAAGACAAAATAAAGACTTAT
TAACAAATTGTTTCAGATTCTTGGTGATATGAAGGTTCCACAAGCTTCTG
CAGTCGAGGCTATGAAGGAGGAATGTGAAGAAAAAACATTAAAAAACATC
ACTTTATGGGAATCAGACGATAGTGGAGTTCTTCAACCACCACAAGCTGT
TGGTAACGCATTATGTCCANGTATACGCTCGTATAACCACGGACGATTTT
CGCGGGATTTCTTTGGATTACGTCATATATCTTTGTGTCCTTAAGCTTCA
CAGTTTGGATTTTTTCTTTATTTTCTTATAAGCATATACTTTATAAGAAG
CAAATCAATAACTCTTGATAGACG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014757	XLOC_014757	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000565	supercontig	sc0000565:30491..37264 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.446428	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00026251 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4)

HSP 1 Score: 162.155 bits (409), Expect = 3.889e-41
Identity = 132/445 (29.66%), Postives = 203/445 (45.62%), Query Frame = 3

Query:   18 PKLKSDPFVTVDVHDSRMRFVCSFEPEVIKNNNQYNVTWYGVTSDGQPQVLFEEMLQSAETKSYLQNTNSKRRQQTFCLNQDIFCEVRSYFVGN-EKDGVVKRSNNFYAGIKVSPTSLKLSESDPPTELTFTSTVPIVCNKDTE---NCGVTLRIA------QKENLDGALEFCSLS*VITHPLLTDPFHXLDGALEFCSLSFEPGEAGQTKTMKVAALRDFRNDGDKALKIKFKIPITPNPLDWDCHPNIPD-VTVLTKDVTTAQCQSTGDPHIRTFDGRYFDHYKVGDYVLVKSEARLFEVHVRTFQC----WSVSCNCAVAAREGXXXXXXXXXXXXXPRAR---FASTVEPQPGSIMEMSPNGKTFVFNFPSGASVKFQANSWGANVYVQLPPDDYGKTKGLCGIWNGDRSDDLTSKDGREFQGRGIANVGFTESWRFQTG 1298
            P     P V V++ +SR+   CSF+    KN+  +++ W  ++S    + L +E    A +   L   N +       L   IFC    +F+ N     V   S  F+AG K+ P    +SE      L   STVPI+C++ +E    C ++L++       +   L+ AL  C +          D       A   CS +F          +   A+ DF  DGD+   I  + PI      W+ +  IPD + +  KDV TA C +  DPHI TFDGR +D++K G +VL KS +R FEVHVR + C    + VSCNC   A+EG D++  DMC  ++  ++   F  + +      +  S  G+     F SGA ++     WG ++ ++ P  DY  T GLCG ++ +  +D   K+G +        V F   WR   G
Sbjct:  189 PPPAGRPEVLVELIESRLFCRCSFDVPATKNSVGFHIAWSRLSSQEVKEELTQETTVQAFSLLELDGINLR-------LGDRIFCSASVFFLENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKLKTIGQGREHLGLNLALSSCHV----------DLLQTSSCANGTCSHTF----------VYYTAVTDFSRDGDRVSNIVVQ-PIVNEDFLWNNY--IPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFIRADLGEWGMSLTIRAPSVDYRNTLGLCGTFDENPENDFHDKNGMQIDQNFNNYVAFINEWRILPG 603

The following BLAST results are available for this feature:

BLAST of TCONS_00026251 vs. Swiss-Prot (Human)

BLAST of TCONS_00026251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VWDE	3.889e-41	29.66	von Willebrand factor D and EGF domain-containing ...	[more]

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TCONS_00026251 (transcript) - C. hemisphaerica