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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026282 ID=TCONS_00026282|Name=TCONS_00026282|organism=Clytia hemisphaerica|type=transcript|length=778bp TATGGCGGAGAAGAGATCAGAGGCCGGGATTtgatttgtaaacaaaaaat attttttgtgatttgtAGTGTGGAAGAACAAAAATTTAAGTTGGTATGGC TTTTGACTGTAAAGTTCAGTATCTAGACGATACAGATCCATTTAATAGTA CAAGTTTCCCTGAACCCTCAAGGCCTCCAGCTTATTCATTTCGAGATGGT GTTCCAGTCTGTACCCAACTCCCTGCTGTTCATCGTCTACTCAGCGCTCC TCACAACcttGATGACTGTGCATTGCAATTATCACACAATTTAAATTACT TGGACCTTGAATTATCTATTGACGAGCAAGATGATCTACTGGAAGGATTC AAAGACAAcCGTAAAAACACCATCATCCTGCGAACCCAACTTTCCGTTAG AGTACACAATATCAttgCCAAACTATTGACTGCCAGTGGAAGGGATTTGA GGAGGGCCCTTTTTTCACTAAAACAAATCTTTCAGGATGATAAAGACTTG GTCCACGAATTCGTCACTAATGATGGTCTCAGTTGCCTTATCACTGTGGG CACTGATGCAGACCAAAATTATCAGAATTACATTTTACGTGcCATCGGTC AGATAATGCTGTATGTTGATGGTATGAATGGTGTGATTGAACATAACGAA ACAATACAATGGCTCTACAGTCTACTCTCATCAAAGTATCGATTGGTACA AAAGACATCATTGAAGTTGCTTTTGGTTTTTGTGGAATATACAGAGAACA ATGCATATTTAGTATGGCAAGCAGCACT Run BLAST on NCBI transcript from alignment at sc0000566:150932..158554+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026282 ID=TCONS_00026282|Name=TCONS_00026282|organism=Clytia hemisphaerica|type=transcript|length=7623bp|location=Sequence derived from alignment at sc0000566:150932..158554+ (Clytia hemisphaerica) TATGGCGGAGAAGAGATCAGAGGCCGGGATTtgatttgtaaacaaaaaat
attttttgtgatttgtAGTGTGGAAGAACAAAAATTTAAGTTGGTATGGC
TTTTGACTGTAAAGTTCAGTATCTAGACGATACAGATCCATTTAATAGTA
CAAGTTTCCCTGAACCCTCAAGGCCTCCAGCTTATTCATTTCGAGATGGT
GTTCCAGTCTGTACCCAACTCCCTGCTGTTCATCGTCTACTCAGCGCTCC
TCACAACGTAAGATTTTTGTTGACTGCTCATTTGCCAAAgattattttgt
tgattttatctTCAGATGGATTTTTTTTGAGGCAGGTTGCTGTTTTCTAA
CAAGTGTACATTACAAGTTTGTGATCACTTCCACACTAAGCGGGGGTACA
CTATAAGTTTTACTTAGTTAGAaactgttgtttttttataaccagacggt
gtcaatcgaacaacttcgaacaaatatcgcaatcgaaccaatcgaacgta
atcgaacgcgatcgaataattgcgattcgattgtcgaacgtaatcgaatc
ttaatcgaacggccgattcagaggtaatattcgattgcgttcgagtaatg
ttcgattgatagttgactatgttcgattggttcgattgattgtcaattac
attggattaatatTCGATTACGATTaagttcgatgagtttgattgcgatt
aaatcaaATTGTATCACTCTGTTatagctttttagcgtgggcggccgagt
gcttaagtaccataccaaagcgaataaaatctaatacacaattgaatcaa
tcgaacgtaatcgaatacaatcgaatgtaatcgaagcaatcgaacagtaa
atcctgggtaatattcgattgcgattcgattgcgttcgacaatcgaattg
caattattcgattgcgttcaattgcgttcgattgatttggcgttcgatgc
gttcgattgacaccgtctggttataATTATAAAAGTTTCCCATTTCAGCA
GTAAtattcttgtcacttttccaAGATCTTTCCGCTATTTCTCAGGATAA
TCGGCAAGCAATTagaaagggtttgtttctaaaaGTATGTAcgaaaaatc
ttgtgtttactatAATACGAAACTACTGTACCTAACATTCCGAAGCTCGT
TTTTTAACTACCCGAACAGCCAAACAAAATCATGGTCTTTTTCTGATgga
aaagtggcaaaggaatcttgGGAAACTTATAATAAACAACAGACTTCagt
tttatatatattttgtatGATTTCATTCCTACcttttgttgtcaaagaga
tcaGGCAGAAAaagtaatttaaaaaatttagaaatttttattgatgGATT
GGATATTAATTGATAAGTCAAACTAATTTTAGTATTTTCGATTGATTTCG
GGGTTGTTAAAATTGGAATTGATATACGCGATCAATTCTTTTAAGCCAAT
ATCCATATGATATATagtttataaataaaatttaccatatAACACTCAAG
TCTCTAAACTTTTTTGCAGCTTTTACAGGTTTTGCTGCAAAAATTTAGGT
CATTTCAATTGCACCTTTTTTGGCAAGGAAATATATGAAAAACTTTCTGT
TTTGAGAGCTAAAATTACATCGAACAAGAGAGAAGAGATGTATTggtttg
aaaatcaaaccattttacaaaaattaagTATACTATGTATGTTGTAACGT
GACAAATCCAACAGAGTACCGTACGTtgatctaatgtcgacatccctcct
ctaattccgacaccctttatAGAGATGGGAATAATTGGAAGGTCAGGATC
ACTGGTAGACAATGGtagattttttcctctctgatcgctaagcaaagaaa
aaaagtttccatcagcgattcTGACATTCACATTAACCCtaactctaaag
aagggtgtcggaattagaagagggatgtcgatattagaagagggatgtcg
atattagaccaacttacggtatataGTTTTCAGACTCGCCTCACCAAGAA
TCCAGGAGAGATCCAAATCCACAAATAACTTTGATCCAGCTTCCTCAACA
ATCCAAAATTagaaagtctttgaaagtctaAACATTGCAGCGGATGCTCA
AAATTTTTCAGGCAGAAAGTTATTCAGCAAAAGATGCATGAAAAATCTTA
CAAATTCAAGAGTGATGGAGTGATCATTTTTTACATGCATGAGAAGTTGC
TGGCATATGAAAGTCTCCTGCTCAATGCAGGAAGTTGAAAGCTAATAATA
TTCATTCTTTACACTTGCACTTAGTGATCAATTCTATTGACTGTCTTTCC
ATCACAATTTCTCCCATACTGTGCAAAATTAAGGCTTTTTATGTGACAGG
TCCAAAAAATAGATAGTTTGATTTGTTTCTGACCAGACAAATAAAAAGAC
CATTTTAAGAAGTGGCAAAGACTATTGTAAACCCTAAACTTTCACAATAT
TCAGTTGGATTCCTGTTTGGATCCTGGTCAGGGAAAGAAGAACTAAAATG
CAAGTTTAGTTgcaattttgtttgattttagaaaatttgcaaatctcttt
caatttttattttgaaaatttatattattttctatgaatcaggattattt
tttaatttgaaatgtttgattttCATAGAACAGCTCTGGAGCAAGAtaga
ttgttttttttggataaaTGAATTGTATTGCTCCAACTgagttttaaaga
aaatcttaaCTCAATTGATgagttgttgattttttttgtacatttttgag
cttgcaacattttttcaagtttcTTCTACAAAGTTAATTACCATAAAAGT
ATTATTGCCaagcctttcttttttataaaggaTGTTAGTTTATTGTCATA
AAGttagatcttcatttttattatatCATCCTGATACAGGAACTAAttca
tttttaatgtttttccctTATAAGGCCATTACTCATAGTTAGCTTTCAAC
TGCATGCTATTAAAATGCTTCCATAAATTCAAtgtaaacattgaaacaat
AGTACTTTGCATCAGCAAAATAGATTTTTGGCTTATGAATCTGAATTAAA
CTTAAAATTGGGTATATTTGGTATTGATTTgacttcatttttgtttttgt
tttagcttGATGACTGTGCATTGCAATTATCACACAATTTAAATTACTTG
GACCTTGAATTATCTATTGACGAGCAAGATGATCTACTGGAAGGATTCAA
AGACAAGTATGTATTATTTTAGGCATTTCTCAATAAGCTACCGGCAACCC
TTCAATCATGTACAGTAAAGCTTATCTCTTATTGATATTTATCATGGTTG
TAAAATGCCTCTTCTCCTTTAGTTTACACCGAAAACTGGTGTTCTAATTT
ATGCATCATTTTATGCAGATTTTCTTATTTAAGAAGTTTCTCTAGGTATC
TGTTTGctcaaaatccaaatttaaaacAACACAATGCTTTGAATTCATCA
ACTTTCTTGATTCTGAGTTTAaattaattgttttattttttatttttttg
tcaatctGTTTGACCTCCGGTTTTATGCCATAATAAACTTTAATGTTTGA
TGGTTTTGACAACTTGGAGAGTCAAGAGTTTgtttataaaatgaaaaaat
atattatttaaaaGACTCCTTGTTTTGTGAGAGAATTTGAGACATTTTCC
TCCACTTACAGTTCTTTTATGGGTTTAGTATGCATATTACACTATTTCAA
AATGCTTTTGGCTTTGTACATAATTTTACATGTCACCAGGCTTAATATGG
TTTTAAAAGGATACAAAATGTTCACAAAATAAATACCTGCCTttctttgt
ttacattaaaatttgattcaaTAAATTCTGTTTTCACttcttttatttta
agttttgccaTGCTTCACAACGTATTGACATTGCTTTGATATTTTATCTT
ATTTGcttctcaaataaaaacttcCTGATAATAAAGTTATTTTCTGGCAC
GTCTCGCGGAACAACATATGTTTAGAATACTTTGATCCTTTTCCCTTGAG
TAACCTAACGGTTATTGTACTCTGTTGTTTTTACCAAGTGNTTATTGTCA
TAAAGttagatcttcatttttattatatCATCCTGATACAGGAACTAAtt
catttttaatgtttttccctTATAAGGCCATTACTCATAGTTAGCTTTCA
ACTGCATGCTATTAAAATGCTTCCATAAATTCAAtgtaaacattgaaaca
atAGTACTTTGCATCAGCAAAATAGATTTTTGGCTTATGAATCTGAATTA
AACTTAAAATTGGGTATATTTGGTATTGATTTgacttcatttttgttttt
gttttagcttGATGACTGTGCATTGCAATTATCACACAATTTAAATTACT
TGGACCTTGAATTATCTATTGACGAGCAAGATGATCTACTGGAAGGATTC
AAAGACAAGTATGTATTATTTTAGGCATTTCTCAATAAGCTACCGGCAAC
CCTTCAATCATGTACAGTAAAGCTTATCTCTTATTGATATTTATCATGGT
TGTAAAATGCCTCTTCTCCTTTAGTTTACACCGAAAACTGGTGTTCTAAT
TTATGCATCATTTTATGCAGATTTTCTTATTTAAGAAGTTTCTCTAGGTA
TCTGTTTGctcaaaatccaaatttaaaacAACACAATGCTTTGAATTCAT
CAACTTTCTTGATTCTGAGTTTAaattaattgttttattttttatttttt
tgtcaatctGTTTGACCTCCGGTTTTATGCCATAATAAACTTTAATGTTT
GATGGTTTTGACAACTTGGAGAGTCAAGAGTTTgtttataaaatgaaaaa
atatattatttaaaaGACTCCTTGTTTTGTGAGAGAATTTGAGACATTTT
CCTCCACTTACAGTTCTTTTATGGGTTTAGTATGCATATTACACTATTTC
AAAATGCTTTTGGCTTTGTACATAATTTTACATGTCACCAGGCTTAATAT
GGTTTTAAAAGGATACAAAATGTTCACAAAATAAATACCTGCCTttcttt
gtttacattaaaatttgattcaaTAAATTCTGTTTTCACttcttttattt
taagttttgccaTGCTTCACAACGTATTGACATTGCTTTGATATTTTATC
TTATTTGcttctcaaataaaaacttcCTGATAATAAAGTTATTTTCTGGC
ACGTCTCGCGGAACAACATATGTTTAGAATACTTTGATCCTTTTCCCTTG
AGTAACCTAACGGTTATTGTACTCTGTTGTTTTTACCAAGTGTCTTGTTA
TAAACAAGCTATTAAAATCTGCAAACGGTAGTACCTCTCAATTTCTATTT
CAATGCTTACTTGAATCGATTCCAAGCACTGTTCTTTGTCAAAATGGTTT
GGGAGAAAGCTTCTAGGTGGAGTTTAGACCGTCACCAAACAGCGTTTTTA
CGCAATTATCAATCAGAATGGTAATATGGTTATTTGACCTGTCACACCTT
AGACATTCTTAAGGGTTTTGAGATTTGTGACATTCTTTTTGTATAAATGT
CCCAAAGTAGACTCACATTTTAGACTCAGATAATTTGCTAGTGTTTACTT
TCAAAACTGGAAATGTTTCTATAAAAAATACGAGAGAAATAATGTAGTAC
TCAGTGAGTACCCTACTTTTAACATGTTTTGGGTGTGTTTATTTAAAGCT
GAACATAAGCTAacaagaaaataatgaaattcaaTTCATGGACAGTCTTA
ATATTTATCTTGGATTTAGTTTGGGATTTACAAAGCCCCTTAAAGAAAAA
CCAACTTCATCAGACACCTTTTCTACTTAGTTTGTTATGTTTTAAATCAG
TCTTTGGAGACTATTGCTCAATTTCacgattttttcagatttttaacacc
taaaacttaaaacttctttcttttttgaaattcaaatatgTTACAGTAAT
TCTTTCTGAAATGTGAGCTCaaaaaattccaaaacaaattttgttttgac
aaaacaaaagaattaataGGTGTTAAAAGCTGAAATTCCCTTTACATTTA
AATACAAAAATGTCCCTGTCTCCAAAAGAAACATCAGCTTAAAATAGCCT
TATCTGAAATTTGTTAAATAATCAAATTGCCCATTTTAATGActcaaata
tatttattttcagcCGTAAAAACACCATCATCCTGCGAACCCAACTTTCC
GTTAGAGTACACAATATCAttggtttgtttatattttctttttcaccttt
caagtgcaatttttcattctattatcctataatttttttattctactacc
aaaaacaacaaaatggccAATTTCAAGAAATACAGGACAGTGTCTAGAGA
CTGAAAAGGAAAATTCTGCTGTTTTTTTCGCAAAGAAGGCTCTATTAACC
AATATTTCACATAGTTAAACAGTGCGAAGGCACTAAAAAGGCATGACCTA
GTGATTTCTAAACATTTCACTTTTTACCTGTTTTTACAGTGTacgtttta
tcaaaatatttaatattgaCTCATAATCACAATATATCTTTATTATTGTT
TACTTTCAGCCAAACTATTGACTGCCAGTGGAAGGGATTTGAGGAGGGCC
CTTTTTTCACTAAAACAAATCTTTCAGgtaaataattcagaatatcaCCA
TTACCGGATGTCTAGGCATTGATTATTATTGAATTAGATTacaactttct
ttttaagtCAATATCTAGTTTCACCCTAAAAATGGCTTCCTGGTTTAAAA
CACTTATGAACCTGACACTAAATAAACCATCGATTCCTTGAATAGTAATA
ACATGGATTTCGTTTCATACAAAGGAAAACACTGTTTCTTACTATTCTAT
GTTTCAAATCTTCTACTAGGATGATAAAGACTTGGTCCACGAATTCGTCA
CTAATGATGGTCTCAGTTGCCTTATCACTGTGGGCACTGATGCAGACCAA
AATTATCAGAATTACATTTTACGTGGTAAGTTAAATGTAATAATCAACTC
TGataatctgaaaaaactttgaTTGAAATTCTCTTCATTAACTGCTGTTT
TTGATTATCTTTCCCCTACTTAAACTACTCTGATCCTAATATTTCCCTTA
GTTTGAAGTTAATAAACATatgaaaaacaatttcaaaatcgttttttttg
tttgtttagcCATCGGTCAGATAATGCTGTATGTTGATGGTATGAATGGT
GTGATTGAACATAACGAAACAATACAATGGCTCTACAGTCTACTCTCATC
AAAGGTAAATTTAAAAGTGCACAAACATTTTTTACTACACTCGATTTTGT
TTTCTGCTGCTGTTATCTTAGCCAGGGGTTCACttgaagcttttttatag
actgagTGGTTCATGATTAAGTCAGAATTATTTCTGTTATTTCTATATAT
GGTAGTATAGTACATGGTAGTTCTCGATTTTGAGCTTTTGCTTATGCAGC
AGATtgtagttgtttttggaaggtgaaaatttttaatataaatTGATTGC
ATATTTTAACTGCTGTTATTTTGGACTGACTACTAATTTTATGTACATTT
ATTATTTTCTTCTGCATTTCTTTTATTCTAGTATCGATTGGTACAAAAGA
CATCATTGAAGTTGCTTTTGGTTTTTGTGGAATATACAGAGAACAATGCA
TATTTAGTATGGCAAGCAGCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00026282-exon-sc0000566-1491911889:150932..151188 | TCONS_00026282-exon-sc0000566-1491911889:150932..151188 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1510915933:150932..151188 | TCONS_00026282-exon-sc0000566-1510915933:150932..151188 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1575043694:150932..151188 | TCONS_00026282-exon-sc0000566-1575043694:150932..151188 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1491911889:154037..154137 | TCONS_00026282-exon-sc0000566-1491911889:154037..154137 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1510915933:154037..154137 | TCONS_00026282-exon-sc0000566-1510915933:154037..154137 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1575043694:154037..154137 | TCONS_00026282-exon-sc0000566-1575043694:154037..154137 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1491911889:157045..157103 | TCONS_00026282-exon-sc0000566-1491911889:157045..157103 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1510915933:157045..157103 | TCONS_00026282-exon-sc0000566-1510915933:157045..157103 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1575043694:157045..157103 | TCONS_00026282-exon-sc0000566-1575043694:157045..157103 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1491911889:157441..157508 | TCONS_00026282-exon-sc0000566-1491911889:157441..157508 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1510915933:157441..157508 | TCONS_00026282-exon-sc0000566-1510915933:157441..157508 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1575043694:157441..157508 | TCONS_00026282-exon-sc0000566-1575043694:157441..157508 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1491911889:157751..157856 | TCONS_00026282-exon-sc0000566-1491911889:157751..157856 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1510915933:157751..157856 | TCONS_00026282-exon-sc0000566-1510915933:157751..157856 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1575043694:157751..157856 | TCONS_00026282-exon-sc0000566-1575043694:157751..157856 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1491911889:158041..158135 | TCONS_00026282-exon-sc0000566-1491911889:158041..158135 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1510915933:158041..158135 | TCONS_00026282-exon-sc0000566-1510915933:158041..158135 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1575043694:158041..158135 | TCONS_00026282-exon-sc0000566-1575043694:158041..158135 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1491911889:158463..158554 | TCONS_00026282-exon-sc0000566-1491911889:158463..158554 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1510915933:158463..158554 | TCONS_00026282-exon-sc0000566-1510915933:158463..158554 | Clytia hemisphaerica | exon |
TCONS_00026282-exon-sc0000566-1575043694:158463..158554 | TCONS_00026282-exon-sc0000566-1575043694:158463..158554 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000566 | supercontig | sc0000566:150932..158554 + |
Blast
BLAST of TCONS_00026282 vs. Swiss-Prot (Human)
Match: FHOD3 (FH1/FH2 domain-containing protein 3 OS=Homo sapiens GN=FHOD3 PE=1 SV=2) HSP 1 Score: 345.51 bits (885), Expect = 4.951e-109 Identity = 165/226 (73.01%), Postives = 192/226 (84.96%), Query Frame = 3
Query: 108 CKVQYLDDTDPFNSTSFPEPSRPPAYSFRDGVPVCTQLPAVHRLLSAPHNLDDCALQLSHNLNYLDLELSIDEQDDLLEGFKDN----RKNTIILRTQLSVRVHNIIAKLLTASGRDLRRALFSLKQIFQDDKDLVHEFVTNDGLSCLITVGTDADQNYQNYILRAIGQIMLYVDGMNGVIEHNETIQWLYSLLSSKYRLVQKTSLKLLLVFVEYTENNAYLVWQA 773
C+VQ+LDDTDPFNST+FPEPSRPP ++FR+ + + TQL VHRLL APH LDDC LQLSHN YLDLE ++ EQ D LEGF+D+ +K++IILRTQLSVRVH I KL +SGRDLRRALFSLKQIFQDDKDLVHEFV +GL+CLI VG +ADQNYQNYILRA+GQIMLYVDGMNGVI NETIQWLY+L+ SK+RLV KT+LKLLLVFVEY+E+NA L+ QA
Sbjct: 6 CRVQFLDDTDPFNSTNFPEPSRPPLFTFREDLALGTQLAGVHRLLQAPHKLDDCTLQLSHNGAYLDLEATLAEQRDELEGFQDDAGRGKKHSIILRTQLSVRVHACIEKLYNSSGRDLRRALFSLKQIFQDDKDLVHEFVVAEGLTCLIKVGAEADQNYQNYILRALGQIMLYVDGMNGVINRNETIQWLYTLIGSKFRLVVKTALKLLLVFVEYSESNAPLLIQA 231
The following BLAST results are available for this feature:
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