TCONS_00026282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026282
Unique NameTCONS_00026282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026282 ID=TCONS_00026282|Name=TCONS_00026282|organism=Clytia hemisphaerica|type=transcript|length=778bp
TATGGCGGAGAAGAGATCAGAGGCCGGGATTtgatttgtaaacaaaaaat
attttttgtgatttgtAGTGTGGAAGAACAAAAATTTAAGTTGGTATGGC
TTTTGACTGTAAAGTTCAGTATCTAGACGATACAGATCCATTTAATAGTA
CAAGTTTCCCTGAACCCTCAAGGCCTCCAGCTTATTCATTTCGAGATGGT
GTTCCAGTCTGTACCCAACTCCCTGCTGTTCATCGTCTACTCAGCGCTCC
TCACAACcttGATGACTGTGCATTGCAATTATCACACAATTTAAATTACT
TGGACCTTGAATTATCTATTGACGAGCAAGATGATCTACTGGAAGGATTC
AAAGACAAcCGTAAAAACACCATCATCCTGCGAACCCAACTTTCCGTTAG
AGTACACAATATCAttgCCAAACTATTGACTGCCAGTGGAAGGGATTTGA
GGAGGGCCCTTTTTTCACTAAAACAAATCTTTCAGGATGATAAAGACTTG
GTCCACGAATTCGTCACTAATGATGGTCTCAGTTGCCTTATCACTGTGGG
CACTGATGCAGACCAAAATTATCAGAATTACATTTTACGTGcCATCGGTC
AGATAATGCTGTATGTTGATGGTATGAATGGTGTGATTGAACATAACGAA
ACAATACAATGGCTCTACAGTCTACTCTCATCAAAGTATCGATTGGTACA
AAAGACATCATTGAAGTTGCTTTTGGTTTTTGTGGAATATACAGAGAACA
ATGCATATTTAGTATGGCAAGCAGCACT
Run BLAST on NCBI

transcript from alignment at sc0000566:150932..158554+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026282 ID=TCONS_00026282|Name=TCONS_00026282|organism=Clytia hemisphaerica|type=transcript|length=7623bp|location=Sequence derived from alignment at sc0000566:150932..158554+ (Clytia hemisphaerica)
TATGGCGGAGAAGAGATCAGAGGCCGGGATTtgatttgtaaacaaaaaat attttttgtgatttgtAGTGTGGAAGAACAAAAATTTAAGTTGGTATGGC TTTTGACTGTAAAGTTCAGTATCTAGACGATACAGATCCATTTAATAGTA CAAGTTTCCCTGAACCCTCAAGGCCTCCAGCTTATTCATTTCGAGATGGT GTTCCAGTCTGTACCCAACTCCCTGCTGTTCATCGTCTACTCAGCGCTCC TCACAACGTAAGATTTTTGTTGACTGCTCATTTGCCAAAgattattttgt tgattttatctTCAGATGGATTTTTTTTGAGGCAGGTTGCTGTTTTCTAA CAAGTGTACATTACAAGTTTGTGATCACTTCCACACTAAGCGGGGGTACA CTATAAGTTTTACTTAGTTAGAaactgttgtttttttataaccagacggt gtcaatcgaacaacttcgaacaaatatcgcaatcgaaccaatcgaacgta atcgaacgcgatcgaataattgcgattcgattgtcgaacgtaatcgaatc ttaatcgaacggccgattcagaggtaatattcgattgcgttcgagtaatg ttcgattgatagttgactatgttcgattggttcgattgattgtcaattac attggattaatatTCGATTACGATTaagttcgatgagtttgattgcgatt aaatcaaATTGTATCACTCTGTTatagctttttagcgtgggcggccgagt gcttaagtaccataccaaagcgaataaaatctaatacacaattgaatcaa tcgaacgtaatcgaatacaatcgaatgtaatcgaagcaatcgaacagtaa atcctgggtaatattcgattgcgattcgattgcgttcgacaatcgaattg caattattcgattgcgttcaattgcgttcgattgatttggcgttcgatgc gttcgattgacaccgtctggttataATTATAAAAGTTTCCCATTTCAGCA GTAAtattcttgtcacttttccaAGATCTTTCCGCTATTTCTCAGGATAA TCGGCAAGCAATTagaaagggtttgtttctaaaaGTATGTAcgaaaaatc ttgtgtttactatAATACGAAACTACTGTACCTAACATTCCGAAGCTCGT TTTTTAACTACCCGAACAGCCAAACAAAATCATGGTCTTTTTCTGATgga aaagtggcaaaggaatcttgGGAAACTTATAATAAACAACAGACTTCagt tttatatatattttgtatGATTTCATTCCTACcttttgttgtcaaagaga tcaGGCAGAAAaagtaatttaaaaaatttagaaatttttattgatgGATT GGATATTAATTGATAAGTCAAACTAATTTTAGTATTTTCGATTGATTTCG GGGTTGTTAAAATTGGAATTGATATACGCGATCAATTCTTTTAAGCCAAT ATCCATATGATATATagtttataaataaaatttaccatatAACACTCAAG TCTCTAAACTTTTTTGCAGCTTTTACAGGTTTTGCTGCAAAAATTTAGGT CATTTCAATTGCACCTTTTTTGGCAAGGAAATATATGAAAAACTTTCTGT TTTGAGAGCTAAAATTACATCGAACAAGAGAGAAGAGATGTATTggtttg aaaatcaaaccattttacaaaaattaagTATACTATGTATGTTGTAACGT GACAAATCCAACAGAGTACCGTACGTtgatctaatgtcgacatccctcct ctaattccgacaccctttatAGAGATGGGAATAATTGGAAGGTCAGGATC ACTGGTAGACAATGGtagattttttcctctctgatcgctaagcaaagaaa aaaagtttccatcagcgattcTGACATTCACATTAACCCtaactctaaag aagggtgtcggaattagaagagggatgtcgatattagaagagggatgtcg atattagaccaacttacggtatataGTTTTCAGACTCGCCTCACCAAGAA TCCAGGAGAGATCCAAATCCACAAATAACTTTGATCCAGCTTCCTCAACA ATCCAAAATTagaaagtctttgaaagtctaAACATTGCAGCGGATGCTCA AAATTTTTCAGGCAGAAAGTTATTCAGCAAAAGATGCATGAAAAATCTTA CAAATTCAAGAGTGATGGAGTGATCATTTTTTACATGCATGAGAAGTTGC TGGCATATGAAAGTCTCCTGCTCAATGCAGGAAGTTGAAAGCTAATAATA TTCATTCTTTACACTTGCACTTAGTGATCAATTCTATTGACTGTCTTTCC ATCACAATTTCTCCCATACTGTGCAAAATTAAGGCTTTTTATGTGACAGG TCCAAAAAATAGATAGTTTGATTTGTTTCTGACCAGACAAATAAAAAGAC CATTTTAAGAAGTGGCAAAGACTATTGTAAACCCTAAACTTTCACAATAT TCAGTTGGATTCCTGTTTGGATCCTGGTCAGGGAAAGAAGAACTAAAATG CAAGTTTAGTTgcaattttgtttgattttagaaaatttgcaaatctcttt caatttttattttgaaaatttatattattttctatgaatcaggattattt tttaatttgaaatgtttgattttCATAGAACAGCTCTGGAGCAAGAtaga ttgttttttttggataaaTGAATTGTATTGCTCCAACTgagttttaaaga aaatcttaaCTCAATTGATgagttgttgattttttttgtacatttttgag cttgcaacattttttcaagtttcTTCTACAAAGTTAATTACCATAAAAGT ATTATTGCCaagcctttcttttttataaaggaTGTTAGTTTATTGTCATA AAGttagatcttcatttttattatatCATCCTGATACAGGAACTAAttca tttttaatgtttttccctTATAAGGCCATTACTCATAGTTAGCTTTCAAC TGCATGCTATTAAAATGCTTCCATAAATTCAAtgtaaacattgaaacaat AGTACTTTGCATCAGCAAAATAGATTTTTGGCTTATGAATCTGAATTAAA CTTAAAATTGGGTATATTTGGTATTGATTTgacttcatttttgtttttgt tttagcttGATGACTGTGCATTGCAATTATCACACAATTTAAATTACTTG GACCTTGAATTATCTATTGACGAGCAAGATGATCTACTGGAAGGATTCAA AGACAAGTATGTATTATTTTAGGCATTTCTCAATAAGCTACCGGCAACCC TTCAATCATGTACAGTAAAGCTTATCTCTTATTGATATTTATCATGGTTG TAAAATGCCTCTTCTCCTTTAGTTTACACCGAAAACTGGTGTTCTAATTT ATGCATCATTTTATGCAGATTTTCTTATTTAAGAAGTTTCTCTAGGTATC TGTTTGctcaaaatccaaatttaaaacAACACAATGCTTTGAATTCATCA ACTTTCTTGATTCTGAGTTTAaattaattgttttattttttatttttttg tcaatctGTTTGACCTCCGGTTTTATGCCATAATAAACTTTAATGTTTGA TGGTTTTGACAACTTGGAGAGTCAAGAGTTTgtttataaaatgaaaaaat atattatttaaaaGACTCCTTGTTTTGTGAGAGAATTTGAGACATTTTCC TCCACTTACAGTTCTTTTATGGGTTTAGTATGCATATTACACTATTTCAA AATGCTTTTGGCTTTGTACATAATTTTACATGTCACCAGGCTTAATATGG TTTTAAAAGGATACAAAATGTTCACAAAATAAATACCTGCCTttctttgt ttacattaaaatttgattcaaTAAATTCTGTTTTCACttcttttatttta agttttgccaTGCTTCACAACGTATTGACATTGCTTTGATATTTTATCTT ATTTGcttctcaaataaaaacttcCTGATAATAAAGTTATTTTCTGGCAC GTCTCGCGGAACAACATATGTTTAGAATACTTTGATCCTTTTCCCTTGAG TAACCTAACGGTTATTGTACTCTGTTGTTTTTACCAAGTGNTTATTGTCA TAAAGttagatcttcatttttattatatCATCCTGATACAGGAACTAAtt catttttaatgtttttccctTATAAGGCCATTACTCATAGTTAGCTTTCA ACTGCATGCTATTAAAATGCTTCCATAAATTCAAtgtaaacattgaaaca atAGTACTTTGCATCAGCAAAATAGATTTTTGGCTTATGAATCTGAATTA AACTTAAAATTGGGTATATTTGGTATTGATTTgacttcatttttgttttt gttttagcttGATGACTGTGCATTGCAATTATCACACAATTTAAATTACT TGGACCTTGAATTATCTATTGACGAGCAAGATGATCTACTGGAAGGATTC AAAGACAAGTATGTATTATTTTAGGCATTTCTCAATAAGCTACCGGCAAC CCTTCAATCATGTACAGTAAAGCTTATCTCTTATTGATATTTATCATGGT TGTAAAATGCCTCTTCTCCTTTAGTTTACACCGAAAACTGGTGTTCTAAT TTATGCATCATTTTATGCAGATTTTCTTATTTAAGAAGTTTCTCTAGGTA TCTGTTTGctcaaaatccaaatttaaaacAACACAATGCTTTGAATTCAT CAACTTTCTTGATTCTGAGTTTAaattaattgttttattttttatttttt tgtcaatctGTTTGACCTCCGGTTTTATGCCATAATAAACTTTAATGTTT GATGGTTTTGACAACTTGGAGAGTCAAGAGTTTgtttataaaatgaaaaa atatattatttaaaaGACTCCTTGTTTTGTGAGAGAATTTGAGACATTTT CCTCCACTTACAGTTCTTTTATGGGTTTAGTATGCATATTACACTATTTC AAAATGCTTTTGGCTTTGTACATAATTTTACATGTCACCAGGCTTAATAT GGTTTTAAAAGGATACAAAATGTTCACAAAATAAATACCTGCCTttcttt gtttacattaaaatttgattcaaTAAATTCTGTTTTCACttcttttattt taagttttgccaTGCTTCACAACGTATTGACATTGCTTTGATATTTTATC TTATTTGcttctcaaataaaaacttcCTGATAATAAAGTTATTTTCTGGC ACGTCTCGCGGAACAACATATGTTTAGAATACTTTGATCCTTTTCCCTTG AGTAACCTAACGGTTATTGTACTCTGTTGTTTTTACCAAGTGTCTTGTTA TAAACAAGCTATTAAAATCTGCAAACGGTAGTACCTCTCAATTTCTATTT CAATGCTTACTTGAATCGATTCCAAGCACTGTTCTTTGTCAAAATGGTTT GGGAGAAAGCTTCTAGGTGGAGTTTAGACCGTCACCAAACAGCGTTTTTA CGCAATTATCAATCAGAATGGTAATATGGTTATTTGACCTGTCACACCTT AGACATTCTTAAGGGTTTTGAGATTTGTGACATTCTTTTTGTATAAATGT CCCAAAGTAGACTCACATTTTAGACTCAGATAATTTGCTAGTGTTTACTT TCAAAACTGGAAATGTTTCTATAAAAAATACGAGAGAAATAATGTAGTAC TCAGTGAGTACCCTACTTTTAACATGTTTTGGGTGTGTTTATTTAAAGCT GAACATAAGCTAacaagaaaataatgaaattcaaTTCATGGACAGTCTTA ATATTTATCTTGGATTTAGTTTGGGATTTACAAAGCCCCTTAAAGAAAAA CCAACTTCATCAGACACCTTTTCTACTTAGTTTGTTATGTTTTAAATCAG TCTTTGGAGACTATTGCTCAATTTCacgattttttcagatttttaacacc taaaacttaaaacttctttcttttttgaaattcaaatatgTTACAGTAAT TCTTTCTGAAATGTGAGCTCaaaaaattccaaaacaaattttgttttgac aaaacaaaagaattaataGGTGTTAAAAGCTGAAATTCCCTTTACATTTA AATACAAAAATGTCCCTGTCTCCAAAAGAAACATCAGCTTAAAATAGCCT TATCTGAAATTTGTTAAATAATCAAATTGCCCATTTTAATGActcaaata tatttattttcagcCGTAAAAACACCATCATCCTGCGAACCCAACTTTCC GTTAGAGTACACAATATCAttggtttgtttatattttctttttcaccttt caagtgcaatttttcattctattatcctataatttttttattctactacc aaaaacaacaaaatggccAATTTCAAGAAATACAGGACAGTGTCTAGAGA CTGAAAAGGAAAATTCTGCTGTTTTTTTCGCAAAGAAGGCTCTATTAACC AATATTTCACATAGTTAAACAGTGCGAAGGCACTAAAAAGGCATGACCTA GTGATTTCTAAACATTTCACTTTTTACCTGTTTTTACAGTGTacgtttta tcaaaatatttaatattgaCTCATAATCACAATATATCTTTATTATTGTT TACTTTCAGCCAAACTATTGACTGCCAGTGGAAGGGATTTGAGGAGGGCC CTTTTTTCACTAAAACAAATCTTTCAGgtaaataattcagaatatcaCCA TTACCGGATGTCTAGGCATTGATTATTATTGAATTAGATTacaactttct ttttaagtCAATATCTAGTTTCACCCTAAAAATGGCTTCCTGGTTTAAAA CACTTATGAACCTGACACTAAATAAACCATCGATTCCTTGAATAGTAATA ACATGGATTTCGTTTCATACAAAGGAAAACACTGTTTCTTACTATTCTAT GTTTCAAATCTTCTACTAGGATGATAAAGACTTGGTCCACGAATTCGTCA CTAATGATGGTCTCAGTTGCCTTATCACTGTGGGCACTGATGCAGACCAA AATTATCAGAATTACATTTTACGTGGTAAGTTAAATGTAATAATCAACTC TGataatctgaaaaaactttgaTTGAAATTCTCTTCATTAACTGCTGTTT TTGATTATCTTTCCCCTACTTAAACTACTCTGATCCTAATATTTCCCTTA GTTTGAAGTTAATAAACATatgaaaaacaatttcaaaatcgttttttttg tttgtttagcCATCGGTCAGATAATGCTGTATGTTGATGGTATGAATGGT GTGATTGAACATAACGAAACAATACAATGGCTCTACAGTCTACTCTCATC AAAGGTAAATTTAAAAGTGCACAAACATTTTTTACTACACTCGATTTTGT TTTCTGCTGCTGTTATCTTAGCCAGGGGTTCACttgaagcttttttatag actgagTGGTTCATGATTAAGTCAGAATTATTTCTGTTATTTCTATATAT GGTAGTATAGTACATGGTAGTTCTCGATTTTGAGCTTTTGCTTATGCAGC AGATtgtagttgtttttggaaggtgaaaatttttaatataaatTGATTGC ATATTTTAACTGCTGTTATTTTGGACTGACTACTAATTTTATGTACATTT ATTATTTTCTTCTGCATTTCTTTTATTCTAGTATCGATTGGTACAAAAGA CATCATTGAAGTTGCTTTTGGTTTTTGTGGAATATACAGAGAACAATGCA TATTTAGTATGGCAAGCAGCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014766XLOC_014766Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026282-exon-sc0000566-1491911889:150932..151188TCONS_00026282-exon-sc0000566-1491911889:150932..151188Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1510915933:150932..151188TCONS_00026282-exon-sc0000566-1510915933:150932..151188Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1575043694:150932..151188TCONS_00026282-exon-sc0000566-1575043694:150932..151188Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1491911889:154037..154137TCONS_00026282-exon-sc0000566-1491911889:154037..154137Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1510915933:154037..154137TCONS_00026282-exon-sc0000566-1510915933:154037..154137Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1575043694:154037..154137TCONS_00026282-exon-sc0000566-1575043694:154037..154137Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1491911889:157045..157103TCONS_00026282-exon-sc0000566-1491911889:157045..157103Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1510915933:157045..157103TCONS_00026282-exon-sc0000566-1510915933:157045..157103Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1575043694:157045..157103TCONS_00026282-exon-sc0000566-1575043694:157045..157103Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1491911889:157441..157508TCONS_00026282-exon-sc0000566-1491911889:157441..157508Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1510915933:157441..157508TCONS_00026282-exon-sc0000566-1510915933:157441..157508Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1575043694:157441..157508TCONS_00026282-exon-sc0000566-1575043694:157441..157508Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1491911889:157751..157856TCONS_00026282-exon-sc0000566-1491911889:157751..157856Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1510915933:157751..157856TCONS_00026282-exon-sc0000566-1510915933:157751..157856Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1575043694:157751..157856TCONS_00026282-exon-sc0000566-1575043694:157751..157856Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1491911889:158041..158135TCONS_00026282-exon-sc0000566-1491911889:158041..158135Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1510915933:158041..158135TCONS_00026282-exon-sc0000566-1510915933:158041..158135Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1575043694:158041..158135TCONS_00026282-exon-sc0000566-1575043694:158041..158135Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1491911889:158463..158554TCONS_00026282-exon-sc0000566-1491911889:158463..158554Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1510915933:158463..158554TCONS_00026282-exon-sc0000566-1510915933:158463..158554Clytia hemisphaericaexon
TCONS_00026282-exon-sc0000566-1575043694:158463..158554TCONS_00026282-exon-sc0000566-1575043694:158463..158554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000566supercontigsc0000566:150932..158554 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 1.89455 5.85889 0.795242 0.621324 0.106426 4.38459e-09 0 0 0.0402149 0 2.70942 1.93879 2.3887 0.626459 0.124571 0.729503 0 0 0 6.78147e-08 3.29262 0 1.38444 0.115448 0.63572 7.70123 3.19385 8.34253 16.2701
Blast
BLAST of TCONS_00026282 vs. Swiss-Prot (Human)
Match: FHOD3 (FH1/FH2 domain-containing protein 3 OS=Homo sapiens GN=FHOD3 PE=1 SV=2)

HSP 1 Score: 345.51 bits (885), Expect = 4.951e-109
Identity = 165/226 (73.01%), Postives = 192/226 (84.96%), Query Frame = 3
Query:  108 CKVQYLDDTDPFNSTSFPEPSRPPAYSFRDGVPVCTQLPAVHRLLSAPHNLDDCALQLSHNLNYLDLELSIDEQDDLLEGFKDN----RKNTIILRTQLSVRVHNIIAKLLTASGRDLRRALFSLKQIFQDDKDLVHEFVTNDGLSCLITVGTDADQNYQNYILRAIGQIMLYVDGMNGVIEHNETIQWLYSLLSSKYRLVQKTSLKLLLVFVEYTENNAYLVWQA 773
            C+VQ+LDDTDPFNST+FPEPSRPP ++FR+ + + TQL  VHRLL APH LDDC LQLSHN  YLDLE ++ EQ D LEGF+D+    +K++IILRTQLSVRVH  I KL  +SGRDLRRALFSLKQIFQDDKDLVHEFV  +GL+CLI VG +ADQNYQNYILRA+GQIMLYVDGMNGVI  NETIQWLY+L+ SK+RLV KT+LKLLLVFVEY+E+NA L+ QA
Sbjct:    6 CRVQFLDDTDPFNSTNFPEPSRPPLFTFREDLALGTQLAGVHRLLQAPHKLDDCTLQLSHNGAYLDLEATLAEQRDELEGFQDDAGRGKKHSIILRTQLSVRVHACIEKLYNSSGRDLRRALFSLKQIFQDDKDLVHEFVVAEGLTCLIKVGAEADQNYQNYILRALGQIMLYVDGMNGVINRNETIQWLYTLIGSKFRLVVKTALKLLLVFVEYSESNAPLLIQA 231          
The following BLAST results are available for this feature:
BLAST of TCONS_00026282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FHOD34.951e-10973.01FH1/FH2 domain-containing protein 3 OS=Homo sapien... [more]
back to top