TCONS_00026283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026283
Unique NameTCONS_00026283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length799

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026283 ID=TCONS_00026283|Name=TCONS_00026283|organism=Clytia hemisphaerica|type=transcript|length=799bp
NNTGCTTCCAAAACGGAAGAAGATACAATGGATGCTTTACAAAAGGCTAT
CGCTGGTGATGCCGGTTTATCTCCAGCCAAAACGCGAActcgaaagaaaa
taaataacaaCCATATAAACGACCCGTCCAAACTAACGGCACCGATTCCG
GGCGGTAATTTGAGTAGCTATGATACGGATGATCAGACGGACCAAATGAT
GGACATGCTTGTCAAGAATGCAACGTCTACCGAGAAACGAACTCGCATCC
GGAAGAACAGGAAGAAAGACTCCACGTCCACTCGGAAATCAGcCCGTCGA
ACGAGAACGCTGAAGAATGGTCTCACTCCTGAAGAATTGGAAGCACTACA
GGCTAATATCAACTAACACACTAgttgaaagtgaagaagaagaagaaaaa
cgaaTTTAACTTTGTAGTTAATGAGAGAAAGGATGGTGATATTTTTGAAG
ATACAGTCCTCACACGTAGAAGGATCCCTTACAGCAGCATACTTTGTAAT
CCCTTGTTTGATGGATAGGATGCTACTATTCAAGGTACAATGAACAAAAT
ACAGACCAAGAAGTTACTTAAAGGAAtaaccagataaaaaatgaaattca
accAAAAGATTCTTTCCATAGTCCTTAGCAGAACCTCTTCATATCGGAAT
ACTATTTCTTGAAAATACTTGGTTACCTTCACTCATATAATAGTAGAGgg
caaagtgtccgaaaaaaaattggaaacatagtaatttcgattcccctacc
ccttagctttccaaaaatgtataacaagtgcttctaacaaaacagtcaa
Run BLAST on NCBI

protein sequence of TCONS_00026283-protein

>TCONS_00026283-protein ID=TCONS_00026283-protein|Name=TCONS_00026283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
XASKTEEDTMDALQKAIAGDAGLSPAKTRTRKKINNNHINDPSKLTAPIP
GGNLSSYDTDDQTDQMMDMLVKNATSTEKRTRIRKNRKKDSTSTRKSARR
TRTLKNGLTPEELEALQANIN
Run BLAST on NCBI

transcript from alignment at sc0000566:169922..171102+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026283 ID=TCONS_00026283|Name=TCONS_00026283|organism=Clytia hemisphaerica|type=transcript|length=1181bp|location=Sequence derived from alignment at sc0000566:169922..171102+ (Clytia hemisphaerica)
NNTGCTTCCAAAACGGAAGAAGATACAATGGATGCTTTACAAAAGGCTAT
CGCTGGTGATGCCGGTTTATCTCCAGCCAAAACGCGAActcgaaagaaaa
taaataacaaCCATATAAACGACCCGTCCAAACTAACGGCACCGATTCCG
GGCGGTAATTTGAGTAGCTATGATACGGATGATCAGACGGACCAAATGAT
GGACATGCTTGTCAAGAATGCAACGTCTACCGAGAAACGAACTCGCATCC
GGAAGAACAGGAAGAAAGACTCCACGTCCACTCGGAAATCAGGTAAATTG
ACATACAGTgcactacagttgacgctctcttattcgatgttCTTTTACTC
GATACGCTAAGGGAGCGTTGGATGGAAATGCAATTCCTCTTAAAGATCAA
ATCCTCACAAAAAAGTctccaaaaggcggacactcaatagacgatatcgg
ctttctgaattctccccgaatgattacccatgatgcattgttagggtttg
ggttatcgtccgtgaatttttttgcgcaatgcatcatgggtaatcattcg
gggaaaATTCggtaaagccgatatcgtctattagcaGACACCTCCATTTa
gcgaaaattggtcaattgAAACATTCGCCAGATATCATCTTATAAGCTAc
gttcttgtttttattttcatttagcCCGTCGAACGAGAACGCTGAAGAAT
GGTCTCACTCCTGAAGAATTGGAAGCACTACAGGCTAATATCAACTAACA
CACTAgttgaaagtgaagaagaagaagaaaaacgaaTTTAACTTTGTAGT
TAATGAGAGAAAGGATGGTGATATTTTTGAAGATACAGTCCTCACACGTA
GAAGGATCCCTTACAGCAGCATACTTTGTAATCCCTTGTTTGATGGATAG
GATGCTACTATTCAAGGTACAATGAACAAAATACAGACCAAGAAGTTACT
TAAAGGAAtaaccagataaaaaatgaaattcaaccAAAAGATTCTTTCCA
TAGTCCTTAGCAGAACCTCTTCATATCGGAATACTATTTCTTGAAAATAC
TTGGTTACCTTCACTCATATAATAGTAGAGggcaaagtgtccgaaaaaaa
attggaaacatagtaatttcgattcccctaccccttagctttccaaaaat
gtataacaagtgcttctaacaaaacagtcaa

Coding sequence (CDS) from alignment at sc0000566:169922..171102+

>TCONS_00026283 ID=TCONS_00026283|Name=TCONS_00026283|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0000566:169922..171102+ (Clytia hemisphaerica)
NNTGCTTCCAAAACGGAAGAAGATACAATGGATGCTTTACAAAAGGCTAT
CGCTGGTGATGCCGGTTTATCTCCAGCCAAAACGCGAActcgaaagaaaa
taaataacaaCCATATAAACGACCCGTCCAAACTAACGGCACCGATTCCG
GGCGGTAATTTGAGTAGCTATGATACGGATGATCAGACGGACCAAATGAT
GGACATGCTTGTCAAGAATGCAACGTCTACCGAGAAACGAACTCGCATCC
GGAAGAACAGGAAGAAAGACTCCACGTCCACTCGGAAATCAGcCCGTCGA
ACGAGAACGCTGAAGAATGGTCTCACTCCTGAAGAATTGGAAGCACTACA
GGCTAATATCAACTAANNTGCTTCCAAAACGGAAGAAGATACAATGGATG
CTTTACAAAAGGCTATCGCTGGTGATGCCGGTTTATCTCCAGCCAAAACG
CGAActcgaaagaaaataaataacaaCCATATAAACGACCCGTCCAAACT
AACGGCACCGATTCCGGGCGGTAATTTGAGTAGCTATGATACGGATGATC
AGACGGACCAAATGATGGACATGCTTGTCAAGAATGCAACGTCTACCGAG
AAACGAACTCGCATCCGGAAGAACAGGAAGAAAGACTCCACGTCCACTCG
GAAATCAGcCCGTCGAACGAGAACGCTGAAGAATGGTCTCACTCCTGAAG
AATTGGAAGCACTACAGGCTAATATCAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014767XLOC_014767Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026283-proteinTCONS_00026283-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026283-exon-sc0000566-1491911889:169922..170213TCONS_00026283-exon-sc0000566-1491911889:169922..170213Clytia hemisphaericaexon
TCONS_00026283-exon-sc0000566-1510915933:169922..170213TCONS_00026283-exon-sc0000566-1510915933:169922..170213Clytia hemisphaericaexon
TCONS_00026283-exon-sc0000566-1575043694:169922..170213TCONS_00026283-exon-sc0000566-1575043694:169922..170213Clytia hemisphaericaexon
TCONS_00026283-exon-sc0000566-1491911889:170596..171102TCONS_00026283-exon-sc0000566-1491911889:170596..171102Clytia hemisphaericaexon
TCONS_00026283-exon-sc0000566-1510915933:170596..171102TCONS_00026283-exon-sc0000566-1510915933:170596..171102Clytia hemisphaericaexon
TCONS_00026283-exon-sc0000566-1575043694:170596..171102TCONS_00026283-exon-sc0000566-1575043694:170596..171102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000566supercontigsc0000566:169922..171102 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.7374	15.1192	43.4716	48.3765	59.6161	43.2382	39.2609	46.4401	20.0478	30.7663	25.8289	17.4776	25.5056	19.4729	20.8168	24.7951	30.872	33.0825	23.4721	35.1735	23.7395	25.9882	22.7522	20.3975	22.806	27.6181	52.0111	52.8529	107.24	103.732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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