TCONS_00026292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026292
Unique NameTCONS_00026292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026292 ID=TCONS_00026292|Name=TCONS_00026292|organism=Clytia hemisphaerica|type=transcript|length=465bp
GATTAAGTTAAAAGTTCTTTTTAGCGTTTTTGGCTTCTTTGGGCATGAGG
GTCAGTAGACTTCCGGAGACCTCTACAAGACCAGCAAAGGTAACATTATG
CTTGGATGACGTGTATATCTAGCGTTCGAATTTGGTCACTCGGACCCTTA
GTAGGACTGTTATCGGCTTATTATTTCCATTTTTACAACTGAAATTAGAT
TTCATAATCTTTACAACCGAGGGGTTTTAAAGGTCCGTAAAACTCCAACT
TTGCAGTTCTGAATAATatcaaaaaacatcaattgGCTTTCAATCCACAT
AAAATAGAGTTGATTCTCTCGAGAACCATTTTTGTGAAGAGAGGATTAAG
ATCATCGTCGTCCTGTACCATTATATTTCCATTTTGAATAATCGGATCGT
CACCGATGGTATCCCTGCCTCGAACAACGATATTGATGGTCTTATTCTTA
CCGATAACCGTTAAT
Run BLAST on NCBI

transcript from alignment at sc0000566:102983..105648-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026292 ID=TCONS_00026292|Name=TCONS_00026292|organism=Clytia hemisphaerica|type=transcript|length=2666bp|location=Sequence derived from alignment at sc0000566:102983..105648- (Clytia hemisphaerica)
GATTAAGTTAAAAGTTCTTTTTAGCGTTTTTGGCTTCTTTGGGCATGAGG
GTCAGTAGACTTCCGGAGACCTCTACAAGACCAGCAAAGGTAACATTTTG
ATTGGATGACGTGTATATCTAGCGTTCGAATTTGGTCACTCGGACCCTTA
GTAGGACTGTTATCGGCTTATTATTTCAATTTTAACAACTGAAATTAGAT
TTCATCATCTTTACGACCGAGGGGTTTTAAAGTGCCGTAAAACTCCGACT
TTGCAGTTCTGATAAATAACATCAAAATACATCAATTGGCTTTCAATCCA
CATAAAATAGCGTTGATTCTTTCAAAAACAATTTTTATGAAGAGAGCATT
AAGATAATCTTCCTCCTGTATCATTATATTGCCATTTTGAATAATCGGAT
CGTCACCGATGGTATCACTGCTTTGAACAACGATATTGATGGTCTTATTC
TTACCAATGACCGTTAATGGGTACCGTAAATCTGTATAATCTACTTTTTC
TGAAAATATAGGTAGATGAATTCCGATTATTTCATCATTCTCTTCTTCAG
CTTTTAAGAACTCTACAAATTCATCTTCTTTTATCCAAATAGGATCATCA
TTGAAAATCAACCTAAACTCATCATCATTGTGAAAATAAGGAATTTGAAG
TACTTGGACTGTTGCATTAGCGTTGTACTCTGTCATAAGGTCATTCCATA
GATTGTAGATGTGAAATCCGTTTTCATATTGTGTCCAAAAGTATAAACGG
ATTCTTTCAGACGTTTGGCATTCGATATTTATATATTTTTTATATCTTCT
TTGCCAGTCATAGTGAGGATTATTTAATTGGTCCATCAAAATTTGGTGTA
AATGTCGATTGAAGGTAGTATATGAAGGAAGGTATGAAATGATATAGATT
TTATTTTGCTTTGGTAACCACTCATGAAAGGGTCGATAGGGAAAGTGTTG
GGTAGACCATACCACGAGATCGACTTGTTTACGGACAAAAAGTTTTCTAG
CTAACTCAGATACTTTAACATGTTTATTATCAAAAGAGTAACTTTGATAT
GCAAATATCACAAAAAATAATGTTTGTTTAACATCGTTGTTGTTATGAGG
TATGTTAAGTAAAACCTTTATCACTTCATTCTCGTCAGTCCGTGTTATTG
CCTGAAATTCGCGTTCCAAAAATTCAGCATAATTTTCCATAGTTAAGCGA
ATTGAACGGCTTTGTAATGGAGAAAATATCCAAACAATAGAACAAGGTTT
ATCTAACAATGACTTTACTAAATAGCTCAATTGTATGGCACCATCAGGGG
AACAGTTAGGTGATCGCCAATTAGAGTTATCCGTCTTTTGGAGGGTTTTT
TGAAGTTCTTTCATCGAATGTTACAGCCTCTAGAAGGTAACTCGTTGGAG
TCAACACCTATAACTTTCTACACAAGAACTTTAAATGTGAAACATAATTC
TGGAGGCTTCAAAGAACCTCTGTAAAAAATAAGTTGAAAAATGAGAAAAA
TTTCATTCTTAATCTTTCTTCATTTGCTATAATTTTTTGAAAATTCTACC
TCAAAAATTATGGTGCTCTGGATTATCTTTTCAACGATGTATAATCTGAG
ATGTTTGAAGCATACGTGTTTGCTAGTTGGGGGAGGATTTTGAGCGATTT
TCAAAAACCTGTGTCCGCTAAATGGAGGCGCGCACTGTCTGCCTTTTGAG
GACTTTTCTACAAGGATTTAAATAGAAAATAGAAAGGGGAAAATGTTATG
TCCGCTTTATAATGACTACTAATCAGACTTGACCGCTCTTTAAATTATCC
ACTAATTAGAACGACGTTGATCACTGGTTGCCAAGCTGAAGATTAAATTC
TCATTTTTTTATAAGAACAATTTTAACAACAAGACTTAACATCGGCAAAA
TTAAGGAGAATTGAAAATAAGAACAGAAAAGTTTCATTTGTCCCTGAGAA
ATCTTGACGTCATTAAAAGGAAAACACTCCCTGGAGCGCGTGAATAGCCC
AATTCTTCAATCTTTAGGAAATTGAGCCTTTTGATTTTCATAAAACAAAT
TCTTATAAAAACTGTGTATTCTATTTTTATTATTTGAAATAAATGAATAT
TGGTAGATATAAAAAAAGGTTTCATCACTATTAAAATAATAACAAAGAAA
TATTACAAAACAAAAAGCAACTGATATCCCGATCAATATCAATGTCCCGA
AATATTAAGTTAAAGTTCTTTTTAGCGTTTTTGGCTTCTTTGGGCATGAG
GGTCAGTAGACATCCCGCAACCTCTACAAGACCAGCAAAGGTAACATTAT
GCTTGGATGACGTGTATATCTAGCGTTCGAATTTGGTCACTCGGACCCTT
AGTAGGACTGTTATCGGCTTATTATTTCCATTTTTACAACTGAAATTAGA
TTTCATAATCTTTACAACCGAGGGGTTTTAAAGGTCCGTAAAACTCCAAC
TTTGCAGTTCTGAATAATATCAAAAAACATCAATTGGCTTTCAATCCACA
TAAAATAGAGTTGATTCTCTCGAGAACCATTTTTGTGAAGAGAGGATTAA
GATCATCGTCGTCCTGTACCATTATATTTCCATTTTGAATAATCGGATCG
TCACCGATGGTATCCCTGCCTCGAACAACGATATTGATGGTCTTATTCTT
ACCGATAACCGTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014773XLOC_014773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026292-exon-sc0000566-1575043694:105560..105648TCONS_00026292-exon-sc0000566-1575043694:105560..105648Clytia hemisphaericaexon
TCONS_00026292-exon-sc0000566-1575043694:102983..103358TCONS_00026292-exon-sc0000566-1575043694:102983..103358Clytia hemisphaericaexon
TCONS_00026292-exon-sc0000566-1510915933:105560..105648TCONS_00026292-exon-sc0000566-1510915933:105560..105648Clytia hemisphaericaexon
TCONS_00026292-exon-sc0000566-1510915933:102983..103358TCONS_00026292-exon-sc0000566-1510915933:102983..103358Clytia hemisphaericaexon
TCONS_00026292-exon-sc0000566-1491911889:105560..105648TCONS_00026292-exon-sc0000566-1491911889:105560..105648Clytia hemisphaericaexon
TCONS_00026292-exon-sc0000566-1491911889:102983..103358TCONS_00026292-exon-sc0000566-1491911889:102983..103358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000566supercontigsc0000566:102983..105648 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103141	0	0	0	0	0	0.267259	0	0.128124	0	0	0	1.58003	2.06588	1.0269	0.820387	0.83895	0.449097	1.37404	1.87906	0	0	0.540535	0	0	0	0	0.101401	0	1.88392e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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