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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026300 ID=TCONS_00026300|Name=TCONS_00026300|organism=Clytia hemisphaerica|type=transcript|length=1684bp
gtcaaaaacaaaattggacCGCTAATTGATGGAGAAAACCTTATCAGTGA
TCCaaaaaagatggcagatattctCTCCAAACAATACAGCTCAGTCTTCA
GTACACCCAAACATCCTCCCCCTTCAACAACTGACCAACCAATGCAGATG
GGAGATATCCAACTAACAAGAATGGACTTTGAAGATATGATAGATGAACT
TGATAATACTTCTGCTGCTGGACCAGATGGCTTCCCtgcaatttttctaa
aacactGCAAAAAANGATAGATGAACTTGATAATACTTCTGCTGCTGGAC
CAGATGGCTTCCCtgcaatttttctaaaacactGCAGAAAATCACTATCA
AGACCTATTCTCATCCTTTGGAGAAAATGCCTCGATACTGGAAAGACCCC
TGAAACTCTAAAGAAATCTCTCATTGTACCTATCCACAAAGAAGGAAATC
GAACTCAACCCGAAAGATATCGCTTGNTTTACAATATTGTATAAAAACGG
AAAATCATGCATAGTGATACAAAGCTACAATTTTGGAAGCGTGGCAAACC
TTTCTACAAATTGGACATTCTGGTTTAACAAGAGACCAATCAATCAGGCA
CGTCCAACAAAACACATGTCCACAAGGAGAAGATGCTGCTTCCTCAACGG
GAGATAAGCATAATGTACattttgatttggaaatttcattCAGGAAATTG
TTATGAGGTACAAGTTCTAGTCGAGAGTCTTTCTTAATTTCTCTTTTTAG
TGAAATAATCAAATCCCAGATACTAACAATGTTCTGAATACCAATCATCA
AAGCTAGCCAGTTGAAAGTGGATTGATAAGATTCTGTAAGTTTTGAGGGA
GGAATCTCAACATGCTTTATTTTGCTTATACGTAAAGTCAAATTGGCATA
CGTCTCATAAATGTAgaagaaaattaaatgaaagtTCTTGATTATTGGAA
TGGCTTTCTTGATAGAGATGACCAAACCTTTGTAGAATCTACTATGACCT
ATAGGAAGGCCATCTTTGTTTGAAAGCTGTTCCACCTTCAAAACAAATTT
CTGCAAAATATAGGGTAATGCTGAATTTGAAAGCATGTAAATGAGTCGGT
TCTGTTTGCTTGGGATCTTTTTCATACTTGGGTCCACTTGAATGATCGAG
GTATATTCTTCACCTAAAGTCTGTGCACCTTTTACAGAGGTTacaagaaa
ataaataatatctGATACCATTTCAATTTCATCCTTCAGCTTCATCCAGT
TTTTTAGTCCAAGGAAATGTTGGAATATTTTGGAAAGTCTCCCAGACAAT
ACTTGGCGATAAAATACATCCTttaaatttgattgaattattgCTTGTCT
GTTTGCACTTGTTAATGGCATAATGAGTCCTCaaatattttcatgtattt
tgtACATAACCTTAGTTgaggataaaatgaaaattagtcTAGTTTCCAGA
AACACAAGTGGCATAAACACCCACAAGTAACCACAAGAaggtttacattt
ttttaatcaTCAGGAAATTGGAGAAACCTGATCACACTGCGGGGTATGAG
AATGCTCAAAATGATAGATACAAAATACTGTAGGagattttcaatttgtt
ttctttGGATAAACTTAAATAAGTCCCTAAGACCTAGGTAGCTTTTTATT
CTATGCAAACTAATATAAAAAAGGACAAAGGAAG Run BLAST on NCBI protein sequence of TCONS_00026300-protein >TCONS_00026300-protein ID=TCONS_00026300-protein|Name=TCONS_00026300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MPLTSANRQAIIQSNLKDVFYRQVLSGRLSKIFQHFLGLKNWMKLKDEIE
MVSDIIYFLVTSVKGAQTLGEEYTSIIQVDPSMKKIPSKQNRLIYMLSNS
ALPYILQKFVLKVEQLSNKDGLPIGHSRFYKGLVISIKKAIPIIKNFHLI
FFYIYETYANLTLRISKIKHVEIPPSKLTESYQSTFNWLALMIGIQNIVS
IWDLIISLKREIKKDSRLELVPHNNFLNEISKSKCTLCLSPVEEAASSPC
GHVFCWTCLIDWSLVKPECPICRKVCHASKIVALYHYA Run BLAST on NCBI transcript from alignment at sc0000566:221501..223184 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026300 ID=TCONS_00026300|Name=TCONS_00026300|organism=Clytia hemisphaerica|type=transcript|length=1684bp|location=Sequence derived from alignment at sc0000566:221501..223184 (Clytia hemisphaerica)
CTTCCTTTGTCCTTTTTTATATTAGTTTGCATAGAATAAAAAGCTACCTA
GGTCTTAGGGACTTATTTAAGTTTATCCaaagaaaacaaattgaaaatct
CCTACAGTATTTTGTATCTATCATTTTGAGCATTCTCATACCCCGCAGTG
TGATCAGGTTTCTCCAATTTCCTGAtgattaaaaaaatgtaaacctTCTT
GTGGTTACTTGTGGGTGTTTATGCCACTTGTGTTTCTGGAAACTAgacta
attttcattttatcctcAACTAAGGTTATGTacaaaatacatgaaaatat
ttGAGGACTCATTATGCCATTAACAAGTGCAAACAGACAAGcaataattc
aatcaaatttaaAGGATGTATTTTATCGCCAAGTATTGTCTGGGAGACTT
TCCAAAATATTCCAACATTTCCTTGGACTAAAAAACTGGATGAAGCTGAA
GGATGAAATTGAAATGGTATCagatattatttattttcttgtAACCTCTG
TAAAAGGTGCACAGACTTTAGGTGAAGAATATACCTCGATCATTCAAGTG
GACCCAAGTATGAAAAAGATCCCAAGCAAACAGAACCGACTCATTTACAT
GCTTTCAAATTCAGCATTACCCTATATTTTGCAGAAATTTGTTTTGAAGG
TGGAACAGCTTTCAAACAAAGATGGCCTTCCTATAGGTCATAGTAGATTC
TACAAAGGTTTGGTCATCTCTATCAAGAAAGCCATTCCAATAATCAAGAa
ctttcatttaattttcttcTACATTTATGAGACGTATGCCAATTTGACTT
TACGTATAAGCAAAATAAAGCATGTTGAGATTCCTCCCTCAAAACTTACA
GAATCTTATCAATCCACTTTCAACTGGCTAGCTTTGATGATTGGTATTCA
GAACATTGTTAGTATCTGGGATTTGATTATTTCACTAAAAAGAGAAATTA
AGAAAGACTCTCGACTAGAACTTGTACCTCATAACAATTTCCTGaatgaa
atttccaaatcaaaatGTACATTATGCTTATCTCCCGTTGAGGAAGCAGC
ATCTTCTCCTTGTGGACATGTGTTTTGTTGGACGTGCCTGATTGATTGGT
CTCTTGTTAAACCAGAATGTCCAATTTGTAGAAAGGTTTGCCACGCTTCC
AAAATTGTAGCTTTGTATCACTATGCATGATTTTCCGTTTTTATACAATA
TTGTAAANCAAGCGATATCTTTCGGGTTGAGTTCGATTTCCTTCTTTGTG
GATAGGTACAATGAGAGATTTCTTTAGAGTTTCAGGGGTCTTTCCAGTAT
CGAGGCATTTTCTCCAAAGGATGAGAATAGGTCTTGATAGTGATTTTCTG
CagtgttttagaaaaattgcaGGGAAGCCATCTGGTCCAGCAGCAGAAGT
ATTATCAAGTTCATCTATCNTTTTTTGCagtgttttagaaaaattgcaGG
GAAGCCATCTGGTCCAGCAGCAGAAGTATTATCAAGTTCATCTATCATAT
CTTCAAAGTCCATTCTTGTTAGTTGGATATCTCCCATCTGCATTGGTTGG
TCAGTTGTTGAAGGGGGAGGATGTTTGGGTGTACTGAAGACTGAGCTGTA
TTGTTTGGAGagaatatctgccatcttttttGGATCACTGATAAGGTTTT
CTCCATCAATTAGCGgtccaattttgtttttgac Coding sequence (CDS) from alignment at sc0000566:221501..223184 >TCONS_00026300 ID=TCONS_00026300|Name=TCONS_00026300|organism=Clytia hemisphaerica|type=CDS|length=867bp|location=Sequence derived from alignment at sc0000566:221501..223184 (Clytia hemisphaerica)
ATGCCATTAACAAGTGCAAACAGACAAGcaataattcaatcaaatttaaA
GGATGTATTTTATCGCCAAGTATTGTCTGGGAGACTTTCCAAAATATTCC
AACATTTCCTTGGACTAAAAAACTGGATGAAGCTGAAGGATGAAATTGAA
ATGGTATCagatattatttattttcttgtAACCTCTGTAAAAGGTGCACA
GACTTTAGGTGAAGAATATACCTCGATCATTCAAGTGGACCCAAGTATGA
AAAAGATCCCAAGCAAACAGAACCGACTCATTTACATGCTTTCAAATTCA
GCATTACCCTATATTTTGCAGAAATTTGTTTTGAAGGTGGAACAGCTTTC
AAACAAAGATGGCCTTCCTATAGGTCATAGTAGATTCTACAAAGGTTTGG
TCATCTCTATCAAGAAAGCCATTCCAATAATCAAGAactttcatttaatt
ttcttcTACATTTATGAGACGTATGCCAATTTGACTTTACGTATAAGCAA
AATAAAGCATGTTGAGATTCCTCCCTCAAAACTTACAGAATCTTATCAAT
CCACTTTCAACTGGCTAGCTTTGATGATTGGTATTCAGAACATTGTTAGT
ATCTGGGATTTGATTATTTCACTAAAAAGAGAAATTAAGAAAGACTCTCG
ACTAGAACTTGTACCTCATAACAATTTCCTGaatgaaatttccaaatcaa
aatGTACATTATGCTTATCTCCCGTTGAGGAAGCAGCATCTTCTCCTTGT
GGACATGTGTTTTGTTGGACGTGCCTGATTGATTGGTCTCTTGTTAAACC
AGAATGTCCAATTTGTAGAAAGGTTTGCCACGCTTCCAAAATTGTAGCTT
TGTATCACTATGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026300-exon-sc0000566-1491911889:221501..223184 | TCONS_00026300-exon-sc0000566-1491911889:221501..223184 | Clytia hemisphaerica | exon |
| TCONS_00026300-exon-sc0000566-1510915933:221501..223184 | TCONS_00026300-exon-sc0000566-1510915933:221501..223184 | Clytia hemisphaerica | exon |
| TCONS_00026300-exon-sc0000566-1575043694:221501..223184 | TCONS_00026300-exon-sc0000566-1575043694:221501..223184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000566 | supercontig | sc0000566:221501..223184 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00026300 vs. Swiss-Prot (Human)
Match: PEX10 (Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 5.954e-42 Identity = 94/331 (28.40%), Postives = 162/331 (48.94%), Query Frame = -2
Query: 511 MPLTSANRQAIIQSNLKDVFYRQVLSGRLSKIFQHFLGLKNWMKLKDEIEMVSDIIYFLVTSVKGAQTLGEEYTSIIQVDPSMKKIPSKQNRLIYMLSNSALPYILQKFVLKVEQLSNKD---GLPI------------GHSRFYKG---------------LVISIKKAIPIIKNFHLIFFYIYETYANLTLRISKIKHVEIPPSKLTESYQSTFNWLALMIGIQNIVSIWDLIISL---------KREIKKDSRLE--LVPHNNFLNEISKSK---CTLCLSPVEEAASSPCGHVFCWTCLIDWSLVKPECPICRKVCHASKIVALYHY 1371
M +A+ +I++ KD +YR L G + W++ + E+E++SD+ YF +T++ G QTLGEEY SIIQVDPS +PS R + + ++ LPY+L K +L +EQ D G P+ G R+ + V +++ + ++ H+ +FYI+ + +L R++ I ++ + S E ++ ++ L ++S+ L++S+ ++ +K+ RL L L E + S+ CTLCL ++PCGH+FCW C+ W K ECP+CR+ K++ L HY
Sbjct: 1 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQADPDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVAWFYIHGVFYHLAKRLTGITYLRV-RSLPGEDLRARVSYRLL-----GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHY 325
The following BLAST results are available for this feature:
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