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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026309 ID=TCONS_00026309|Name=TCONS_00026309|organism=Clytia hemisphaerica|type=transcript|length=3678bpRun BLAST on NCBI protein sequence of TCONS_00026309-protein >TCONS_00026309-protein ID=TCONS_00026309-protein|Name=TCONS_00026309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp CDSKPCLYNGTCVDQWNDFTCQCSEGFGGKTCSEFGCTLNDTCPASSGYCRun BLAST on NCBI transcript from alignment at sc0000569:99416..113548+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026309 ID=TCONS_00026309|Name=TCONS_00026309|organism=Clytia hemisphaerica|type=transcript|length=14133bp|location=Sequence derived from alignment at sc0000569:99416..113548+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000569:99416..113548+ >TCONS_00026309 ID=TCONS_00026309|Name=TCONS_00026309|organism=Clytia hemisphaerica|type=CDS|length=4896bp|location=Sequence derived from alignment at sc0000569:99416..113548+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026309 vs. Swiss-Prot (Human)
Match: NOTC1 (Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4) HSP 1 Score: 174.481 bits (441), Expect = 1.092e-43 Identity = 101/253 (39.92%), Postives = 145/253 (57.31%), Query Frame = 3
Query: 666 CQRSLDSCTSPSPCQNDGVCQ--EDFNDFKCECKTYYTSKTCNETINIDCSFDSNLCQNNGTCQSTAVGTGPTFSQSGKDFFNCNCAAGFNGSLCQHDINDCVPDPCQNGGTCTDEVNGYQCGCVPGYTGTNCETDINECAGNPCQNGRQCTELVNDYECDCGGVFTGRNCQTDVDECLNATTCLHNGTCTNTVGGFSCACEPGYFSPRCQYSNMEICEVLKPCQNNATCLDSMAGYNCTCTEKYHGTNCTTL 1418
C+ L C +PSPC+N G C+ ED+ F C C T + +TC IN +C C++ +CQ+T G + C+C AG++G C+ DI+DC P+PC NGG+CTD +N C C+PG+ GT CE DINECA +PC+NG CT+ V+ Y C C F+G +C+ + +C ++C + GTC + + F+C C PG+ CQ+ E C+ +PC + TC D Y CTC + Y G NC L
Sbjct: 826 CEVVLAPC-APSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDIN-ECVLSP--CRHGASCQNTHGG------------YRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCTDGINTAFCDCLPGFRGTFCEEDINECASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDC-TESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNE-CDS-QPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNL 1059 HSP 2 Score: 153.295 bits (386), Expect = 3.666e-37 Identity = 95/268 (35.45%), Postives = 137/268 (51.12%), Query Frame = 3
Query: 666 CQRSLDSCTSPSPCQNDGVCQEDFNDFKCECKTYYTSKTCNETINIDCSFDS--------NLCQNNGTCQSTAVGTGPTFSQSGKDFFNCNCAAGFNGSLCQHDINDCVPDPCQNGGTCTDEVNGYQCGCVPGYTGTNCETDINECAGNPCQNGRQCTELVNDYECDCGGVFTGRNCQTDVDEC-------LNATTCLHNGTCTNTVGGFSCACEPGYFSPRCQYSNMEICEVLKPCQNNAT--CLDSMAGYNCTCTEKYHGTNCTTL 1418
CQ + C S SPC+N G C + ++CEC + +T C + ++ C + LCQ+ G C V G T +C C AG+ GS C+ +++C P PCQNG TCTD + GY C CV GY G NC +I+EC +PCQNG C +L N Y+C C G +C+ +VD+C + C +NGTC + VGG+SC C PG+ RC+ E + PC T C+ + ++C C + G C ++
Sbjct: 1056 CQNLVHWCDS-SPCKNGGKCWQTHTQYRCECPSGWTGLYC-DVPSVSCEVAAQRQGVDVARLCQHGGLC----VDAGNTH--------HCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNEC--LSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESV 1307 HSP 3 Score: 152.14 bits (383), Expect = 7.542e-37 Identity = 96/250 (38.40%), Postives = 136/250 (54.40%), Query Frame = 3
Query: 666 CQRSLDSCTSPSPCQNDGVCQEDFNDFKCECKTYYTSKTCNETINIDCSFDSNLCQNNGTCQSTAVGTGPTFSQSGKDFFNCNCAAGFNGSLCQHDINDCVPDPCQNGGTCTDEVNGYQCGCVPGYTGTNCETDINECAGNPCQNGRQCTELVNDYECDCGGVFTGRNCQTDVDECLNATTCLHNGTCTNTVGGFSCACEPGYFSPRCQYSNMEICEVLKPCQNNATCLDSMAGYNCTCTEKYHGTNCTT 1415
C+ +D C P PC G C++ F C C+ YT C IN +CS S C++ GTCQ + + C C G G C+ +++DC PC + GTC D+++GY+C C PGYTG+ C +I+ECAGNPC NG C + +N + C C + C ++V+EC N+ C+H G C +++ G+ C C+PG+ C +N E CE PC N TC D +GY CTC E + G NC T
Sbjct: 563 CEVDIDEC-DPDPCHY-GSCKDGVATFTCLCRPGYTGHHCETNIN-ECS--SQPCRHGGTCQDR------------DNAYLCFCLKGTTGPNCEINLDDCASSPC-DSGTCLDKIDGYECACEPGYTGSMCNINIDECAGNPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNEC-NSNPCVH-GACRDSLNGYKCDCDPGWSGTNCDINNNE-CES-NPCVNGGTCKDMTSGYVCTCREGFSGPNCQT 790 HSP 4 Score: 137.502 bits (345), Expect = 2.226e-32 Identity = 92/281 (32.74%), Postives = 139/281 (49.47%), Query Frame = 3
Query: 681 DSCTSPSPCQNDGVCQEDFNDFK--CECKTYYTSKTCNETINIDCSFDSNLCQNNGTCQSTAVGTGPTFSQSGKDFFNCNCAAGFNGSLCQHDINDCVPDPCQNGGTCTDEVNGYQCGCVPGYTGTNCETDINECAGNPCQNGRQCTELVNDYECDCGGVFTGRNCQTDVDECL-----NATTCL-------------------------------HNGTCTNTVGGFSCACEPGYFSPRCQYSNMEICEVLKPCQNNATCLDSMAGYNCTCTEKYHGTNC 1409
D+C S +PC C + + K C C + YT C++ ++ +CS +N C++ G C +T +G+ F C C G+ G C+ D+N+CV +PCQN TC D++ +QC C+PGY G +CE + +ECA +PC + +C + +N+++C+C FTG CQ DVDEC N CL H G+C + V F+C C PGY C+ +N+ C +PC++ TC D Y C C + G NC
Sbjct: 374 DACIS-NPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVD-ECSLGANPCEHAGKCINT-LGS-----------FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDECDPDPCHYGSCKDGVATFTCLCRPGYTGHHCE-TNINECSS-QPCRHGGTCQDRDNAYLCFCLKGTTGPNC 638 HSP 5 Score: 137.502 bits (345), Expect = 2.283e-32 Identity = 96/282 (34.04%), Postives = 131/282 (46.45%), Query Frame = 3
Query: 666 CQRSLDSCTSPSPCQNDGVCQEDFNDFKCECKTYYTSKTCNETINIDCSFDS-------NLCQNNGTCQSTAVGTG-------PTFSQS----------GKDFFNCNCAAGFNGSLCQHDINDCVPDPCQNGGTCTDEVNGYQCGCVPGYTGTNCETDINECAGNPCQNGRQCTELVNDYECDCGGVFTGRNCQTDVDECLNAT---------TCLHNGTCTNTVGGFSCACEPGYFSPRCQYSNMEICEVLKPCQNNATCLDSMAGYNCTCTEKYHGTNCT 1412
C+ +D C P+PC N G C + N C+C + C E IN +C+ D C ++ TC A +G P ++S G + F C C GF GS CQHD+N+C PC +GGTC D Y+C C GYTG NC+ ++ C +PC+NG +C + Y C+C +TG C C A C H G C + C C+ GY C+ ++ C PCQN ATC D + GY+C C YHG NC+
Sbjct: 904 CETDIDDC-RPNPCHNGGSCTDGINTAFCDCLPGFRGTFCEEDIN-ECASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCE-DLVDECSP-SPCQNGATCTDYLGGYSCKCVAGYHGVNCS 1181 HSP 6 Score: 136.732 bits (343), Expect = 3.517e-32 Identity = 95/251 (37.85%), Postives = 130/251 (51.79%), Query Frame = 3
Query: 666 CQRSLDSCTSPSPCQNDGVCQEDFNDFKCECKTYYTSKTCNETINIDCSFDSNLCQNNGTCQSTAVGTGPTFSQSGKDFFNCNCAAGFNGSLCQHDINDCVPDPCQNGGTC--TDEVNGYQCGCVPGYTGTNCETDINECAGNPCQNGRQCTELVNDYECDCGGVFTGRNCQTDVDEC-LNATTCLHNGTCTNTVGGFSCACEPGYFSPRCQYSNMEICEVLKPCQNNATCLDSMAGYNCTCTEKYHGTNC 1409
CQ++ D C S +PC N G C + C C + TC + +N +C LC++ GTC + VG+ + C C A G C+ C P PCQNGGTC T +V ++C C+PG+TG NCE +I++C GN C+NG C + VN Y C C +TG+ C DVDEC L C + GTC NT GG++C C G+ C N++ C C + ATC D +A + C C G C
Sbjct: 138 CQQA-DPCAS-NPCANGGQCLPFEASYICHCPPSFHGPTCRQDVN-ECGQKPGLCRHGGTCHNE-VGS-----------YRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVT-HECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCS-ENIDDCASAA-CFHGATCHDRVASFYCECPHGRTGLLC 370 HSP 7 Score: 136.346 bits (342), Expect = 5.846e-32 Identity = 89/252 (35.32%), Postives = 128/252 (50.79%), Query Frame = 3
Query: 666 CQRSLDSCTSPSPCQNDGVCQEDFNDFKCECKTYYTSKTCNETINIDCSFDSNLCQNNGTCQSTAVGTGPTFSQSGKDFFNCNCAAGFNGSLCQHDINDCVPDPCQNGGTCTDEVNGYQCGCVPGYTGTNCETDINECAGNPCQNGRQCTELVNDYECDCGGVFTGRNCQTDVDECLNATTCLHNGTCTNT--VGGFSCACEPGYFSPRCQYSNMEICEVLKPCQNNATCLDSMAGYNCTCTEKYHGTNCTT 1415
C ++D C +PC N G C++ N F C C Y TC +N +SN C + G C+ + G + C+C G++G+ C + N+C +PC NGGTC D +GY C C G++G NC+T+INECA NPC N C + V Y+C+C +TG C+ + C + C + G C + FSC C G+ C+ E VL PC++ A+C ++ GY C C Y G NC T
Sbjct: 675 CNINIDECAG-NPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVN---ECNSNPCVH-GACRDSLNG------------YKCDCDPGWSGTNCDINNNECESNPCVNGGTCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEVVLAPCA-PSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINEC--VLSPCRHGASCQNTHGGYRCHCQAGYSGRNCET 906 HSP 8 Score: 123.25 bits (308), Expect = 4.651e-28 Identity = 84/254 (33.07%), Postives = 130/254 (51.18%), Query Frame = 3
Query: 666 CQRSLDSCTSPSPCQNDGVCQE-DFNDFKCECKTYYTSKTCNETINIDCSFDSNLCQNNGTCQSTAVGTGPTFSQSGKDFFNCNCAAGFNGSLCQHDINDCVPDP--CQNGGTCTDEVNGYQCGCVPGYTGTNCETDINECAGNPCQNGRQCTELVN-DYECDCGGVFTGRNCQTDVDECLNATTCLHNGTCTNTVGGFSCACEPGYFSPRCQYSNMEICEVLK-PCQNNATCLDSMAGYNCTCTEKYHGTNCT 1412
C LD+ +PC+N G C ++KC C ++ K+C + C+ SN C N G C F S + C+C F+G C+ D+N+C P C++GGTC +EV Y+C C +TG NCE C+ +PCQNG C + +EC C FTG+NC+ ++D+C C + G C + V ++C C P + C +++ C+++ CQN TC ++ GYNC C + G +C+
Sbjct: 98 CLTPLDNACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQQAD--PCA--SNPCANGGQCLP--------FEAS----YICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDC-PGNNCKNGGACVDGVNTYNCRCPPEWTGQYCT-EDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCS 333 HSP 9 Score: 122.094 bits (305), Expect = 1.317e-27 Identity = 87/263 (33.08%), Postives = 115/263 (43.73%), Query Frame = 3
Query: 666 CQRSLDSCTSPSPCQNDGVCQEDFNDFKCECKTYYTSKTCNETIN-----IDCSFDSNLCQNNGTCQSTAVGTGPTFSQSGKDFFNCNCAAGFNGSLCQHDINDCVPDPCQNGGT--CTDEVNGYQCGCVPGYTGTNCETDINECAGNPCQNGRQCTELVN---DYECDCGGVFTGRNCQTDVDECLNATTCLHNGTCTNTVGGFSCACEPGYFSPRCQYSNMEICEVLKPCQNNATCLDSMAG--YNCTCTEKYHGTNCTTL 1418
C +D C S PCQN G C + N +KC C C ++ +D S C NNGTC G ++C C GF G C+ D+N+C+ +PC GT C VN + C C G+TG CE+ IN C G PC+NG C N + C C F G C+ D C + CL+ GTC + +C C + P CQ+ C PC N TC + Y C C K++G C L
Sbjct: 1180 CSEEIDECLS-HPCQNGGTCLDLPNTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGG------------YSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGFICKCPAGFEGATCENDARTC-GSLRCLNGGTCISGPRSPTCLCLGPFTGPECQFPASSPCLGGNPCYNQGTCEPTSESPFYRCLCPAKFNGLLCHIL 1428 HSP 10 Score: 118.627 bits (296), Expect = 1.197e-26 Identity = 84/290 (28.97%), Postives = 121/290 (41.72%), Query Frame = 3
Query: 666 CQRSLDSC-TSPSPCQNDGVCQEDFNDFKCECKTYYTSKTCNETINIDCSFDSNLCQNNGTCQSTAVGTGPTFSQSGKDFFNCNCAAGFNGSLCQHDINDCVPDPCQNGGTCTDEVNGYQCGCVPGYTGTNCETDINEC--AGNPCQNGRQCTELVNDYECDCGGVFTGRNCQTDVDECLNATTCLHNGTCTNTVGGFS---------------------------------------CACEPGYFSPRCQYSNMEICEVLKPCQNNATCLDSMAGYNCTCTEKYHGTNC 1409
C++ ++ C P C++ G C + ++C C+ +T C E + CS + CQN GTC+ T G C C GF G C+ +I+DC + C+NGG C D VN Y C C P +TG C D++EC N CQNG C Y C C +TG +C ++D+C +A C H TC + V F C C GY P C E PC++ C++++ + C C + Y G C
Sbjct: 175 CRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNC-ERPYVPCS--PSPCQNGGTCRPT-----------GDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSENIDDCASAA-CFHGATCHDRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRC 449 HSP 11 Score: 87.0409 bits (214), Expect = 6.489e-17 Identity = 65/203 (32.02%), Postives = 90/203 (44.33%), Query Frame = 3
Query: 870 GPTFSQSGKDFFN------------CNCAAGFNGSLCQHDINDCVPDPCQNGGTC----TDEVNGYQCGCVPGYTGTNCETDI-NECAGNPCQNGRQCTEL-VNDYECDCGGVFTGRNCQTDVDECLNATTCLHNGTCTNTVGGFSCACEPGYFSPRCQYSNMEICEVLKPCQNNATCLDSMAGYNCTCTEKYHGTNCTTLKV 1424
GP SQ G+ N C C F G CQ D N C+ PC+N GTC V Y C C G++G C T + N C NPC+NG C L + +Y+C C ++G++CQ D C + C + G C + C C P + P C+ E + C++ TC + + Y C C + G NC V
Sbjct: 21 GPRCSQPGETCLNGGKCEAANGTEACVCGGAFVGPRCQ-DPNPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQ-QADPCA-SNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYV 220 The following BLAST results are available for this feature:
BLAST of TCONS_00026309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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