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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026312 ID=TCONS_00026312|Name=TCONS_00026312|organism=Clytia hemisphaerica|type=transcript|length=823bp
ATTTATTCTTAGATTTTTAAGGTGTGgttcatgaaaaatattggtaTATT
GTAAGGTTTCTCTGTGGTAATGGGTGCATCTTTGGTTACGCAAGCAGCCA
TGGCTTCACAACCACATCAGAAAATTATACATGCCACcgcaaaagaaaag
agaaagctCACAATGGAAGTATCTTGTGCCAGTACACCAGAATATCGCTT
CGATCAATTCATACTTTTATGTGAAGAATGTCAAAGAAGAAAACGGGTTA
TCGAGACAAAACTCAAAGAAATGTTCGAAAAGATTCACGCCACTTCAAAT
TTAGATCAACATTTGAGTGCTGAacaaaaacattacgtcatgagtCTTAT
AAGCCGGTACCGGCAAATACAAGAAGAACAAAACACTTTAATCGAACGTG
AAAAAGTTCGATTGCAAATGATGAAAAGTGAACTGGGTAGAAAGGAAGAA
AGTGTACAGAAAATTCGGAATCGTCTGAAGTATGTGATCGCTTTGAATAA
GGACCATGAAAATATCATAACGCATATTCAACAAGAACGGAAACACTTTT
CCGGAAATAATAATTCGACAATCACAAATGATTTAAGATTAAGGTATCGT
TCACCTGAAAGTGACGAACTTCGATTATAACGACAAAGACGTTCAAGAAT
AAGGATTCTGAATCACAAACTCTCGTTTGCTCTGGAAGATTCAAATCAGG
TTTCTGGTTGTTTACGTTATATTAAAAGACTTTGTCGAATTGGTGATCAT
TGTCTTGTTAAGGCAAAGAGAGAGTATTAAAAAaggatttaaaggtttta
tagCTTTGTATGGCCGAGATAAc Run BLAST on NCBI protein sequence of TCONS_00026312-protein >TCONS_00026312-protein ID=TCONS_00026312-protein|Name=TCONS_00026312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MGASLVTQAAMASQPHQKIIHATAKEKRKLTMEVSCASTPEYRFDQFILL
CEECQRRKRVIETKLKEMFEKIHATSNLDQHLSAEQKHYVMSLISRYRQI
QEEQNTLIEREKVRLQMMKSELGRKEESVQKIRNRLKYVIALNKDHENII
THIQQERKHFSGNNNSTITNDLRLRYRSPESDELRL Run BLAST on NCBI transcript from alignment at sc0000569:114110..122994+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026312 ID=TCONS_00026312|Name=TCONS_00026312|organism=Clytia hemisphaerica|type=transcript|length=8885bp|location=Sequence derived from alignment at sc0000569:114110..122994+ (Clytia hemisphaerica)
ATTTATTCTTAGATTTTTAAGGTGTGgttcatgaaaaatattggtaTATT
GTAAGGTTTCTCTGTGGTAATGGGTGCATCTTTGGTTACGCAAGCAGCCA
TGGCTTCACAACCACATCAGAAAATTATACATGCCACcgcaaaagaaaag
agaaagctCACAATGGTAAATCATAGTTTGCTGGTTGTCAAATTATCACA
GGTTTCCAAATCCAAACCTTTTTTTCACTCACTATATCAGTAGCAAATAT
TTTAATGTTTGACCAAGTTTTCGTGAATAtaaccctgtgtcacagacccg
ttgggagcccagccccactggaaagattgacaaaaaatttcgttCCCGGT
GGGATAATACCTTATAATTTTAGCCCCACTTGGAAATGTGAGGCTAAAAT
TATAATAATTAATTATAATtataacttttatttcatcctagactagcaaa
ctagtctgttaattaataaTGTCAGAGGgtgggaacataaaggcggcagg
cgtttgctagaataggaagCTGCGTAGGACAACGAGCTAAAATttgtgag
aggctgctgattttcagcccttgccgccgacaaaatttcttcctgcgctt
acctaactcctacgctcacttttcccacgtgataccgttccagcccgact
ggcgtgccagtctaattTCATCCCCATGCGGATGAAAtagcacttcaaaa
ccattgcCACTGAATTTTATAACCTTTATAACCATAGAACAAAggcattt
ttatccccatttggatttcaataggaatttttaaccccactgaaaaaaaa
agttccattggggctgtgagacaggggtgttgcaATTCTTAACGTTTTTA
CTCTGTTTAATCACTCAACATTACCGAAAATCTCTTTTTTATGTTCTACA
CCCCTGTCCCACTGATCCATTTGATGAATTTATTATGCAACTGGTATGGA
AAATGAAGAAGTAAAGTCTGTCTCTAAAATCCGAAAATCTGCAgcttttt
ttgtctccgctgtaGATTATAAAAATAGTGAAAGACTTTAATCATATCAG
TGGTATTTTTTAATGAGTGCTGGTTTTGAATTGACATCACGGGGGTGTTG
ttcagtggcggcctggcagggggtgcagggtgtgcagtgcaccacccaga
aagatctgagaggggcgccaaaaagtTTTCTAAGGGGGGGCGCCaaattc
tttttgatgtttaattgggcaatTTGGCGCCCTTCGGCACGTTTATAGCG
CCTTCTATGAGTACAATGCTAATTTTTTCGCCAGCGGCGCTTTATTTTAT
TCTCTTGCATCCTTTCtctcttgaatttttcaaaacttctaaTTGAATCT
GAAGTAGAGAagagtgttgtgtatccaccaggggttaaagagaatgctca
cccccaaaatgagagatcaggggcgttactttcaaaCAGCCACTGCTCTT
ACTGtctaatattttcacttaatgatggagggcgcaaataaggacaaaaa
taccagaggcgccaatttcatagtttgcaccaccaagaaatttAAGCCAG
GCCGCTGGTGTTGTTCATTTTGTATGTACTGTAATTTAAATATATGTGTG
TTTGTTAGTATTTTAGTTTGTGTGTGTTTTGTGTTGACGATACAGACCAG
GTAAGTGAACTTTGACAGAACCATGTATGTTATTGTAAACTCCATTTACA
AGAAGGTACGACGATAGGGTTAATTTATTCATTCTTCATCATTTATTATG
GAACATCAAGTTTATCGACCCAGTTCTATTCATAttattcatattggaag
tttatgaCGACTTGGATCACGAGTTTAAAGTTTGGCTGCGTTTCAGAAGG
TCTTAGTACAAATAGTGGAGAAAACATCCTCCCAtattgcccgatgatgg
gagaagaatctctcgaaacgtagccaaacgtttATCTCGTGATCCAATAG
TCACAATAAACTTCCAATGTGCCTTACTATAACTTTCGGACGGGAATTCT
ATACAcaatacgcatcccctatatcaaaacatcaaAGGGAATTTGTGCAG
CCTAGCCTAAGGCCATGCGGGTCAATGTTTTTTAAGGAACTGATTTTTTG
TGGTGTGGTAGTATCCAGGTTCTATGCtggaattttttgtaaaattgtaT
ACAAAcattagaaaaatgaaaagaacaatTTCGCGTATTTTGCAGTTTAG
GACCTCAAAATTCACATTCACCAAAAAAATACCTTTGGGGTTATGTCAGT
TGGGCAATTTGAAATAATGCtcttatttatttgttttctttataaatttC
CAGGAAGTATCTTGTGCCAGTACACCAGAATATCGCTTCGATCAATTCAT
ACTTTTATGTGAAGAATGTCAAAGAAGAAAACGGGTTATCGAGACAAAAC
TCAAAGAAATGTTCGAAAAGATTCACGCCACTTCAAATTTAGATCAACAT
TTGAGTGCTGAacaaaaacattacgtcatgagtCTTATAAGCCGGTACCG
GCAAATACAAGAAGAACAAAACACTTTAATCGAACGTGAAAAAGTTCGAT
TGCAAATGATGAAAAGTGAACTGGGTAGAAAGGAAGAAAGTGTACAGAAA
ATTCGGAATCGTCTGAAGTATGTGATCGCTTTGAATAAGGACCATGAAAA
TATCATAACGCATATTCAACAAGAACGGAAACACTTTTCCGGAAATAATA
ATTCGACAATCACAAATGATTTAAGATTAAGGTAAGCATGTTAAAGTATT
TTAGAGAGGGAAATTGACTCTTCCATTATTCCAATGATCTATTTTCGAAC
ATTTCATCCTCTGAACACGCGTTTTACCCCTGCACATATTCCgagtttta
aaagaaaatatcaacctCTGACCACCAAGTGTAGAagttttatcgcgcat
gtgtcaatctaacgtctgtagaaaatcaaagatggagagcattaccatat
taatgtttAGCAGACTGTATCGAAACAATAGACagatctttatgttatga
ttctctatcgctGACTCTTAACCAAAGATCTTGGATTATAGTCATGGCTA
CTCCTCTCTGATGGTTGCACGCTGAATATAATCGCGATTGGTCGACAAAG
GTCAGAATATGTTACACCCTACGTGTACGGTTTTATAGGCAGAGCCCAAT
TTGACCTTTGCAGCGACAGTCGTAATTTAACAAATCGTAGTTAACACTGT
GTCGTCAAACCAGAAAATTGtcgtttcagttaattttctgAATATAAACG
AGATTCAAGGATCTATTACTAAACTAGCAAGTTTTTCGgagtaaattttc
aatttgttcaATTGATTCCTAAGAATCGATGAGAGTCGAGAAAGGCTagg
aaaaaacaagaaagagCTGTCATTTTACTTACCAAATTTAATATCTACAA
CATTTCAGTAAAACAAAGTCTAAGATGGCAGATCTTACTATTAAAATGTT
CCCCAAAGGAAAACAAATTGAATTTTAGGTCagaattcaaataaataaaa
caaatcagcattccttgttatttttttcaaaagaaatttcgaaATTCTGA
AAAGTCTGgtaaaattcggaattccgaaaaattaaaataattctgaattt
tgaaaaataaaaaacaattcggaattccgaaaaatcgaaaaattcggaat
tccgaaaaataaaaaaatcggaATTTCGAAAATAAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTAGTTTATCAAATAGCTGTCAGTA
AAATTACAAATTCGAGTTTGAGTAAAATTCCAATTTATTTTCTTACCACA
AgtaaaaacaatttattttaagttttctttcaatATTTAGGTATCGTTCA
CCTGAAAGTGACGAACTTCGATTATAACGACAAAGACGTTCAAGAATAAG
GATTCTGAATCACAAACTCTCGTTTGCTCTGGAAGATTCAAATCAGGTTT
CTGGTTGTTTACGTTATATTAAAAGACTTTGTCGAATTGGTGATCATTGT
CTTGTTAAGGCATGGGACTTGTTTATTTCATTGACAAAGAGAGAGTATTA
AAAAaggatttaaaggttttatagCTTTGTATGGCCGAGATAAcgttata
ttttatgttttcacgtggctcaaaatattttctgttaAGACGGAtggtta
ttttttaattttttcggaTTTATTTCTAgctatgatttttttaatgtttt
cgtATTAATTATATCTAAATATCTAATGAATGACTGTATTTATGATTTTC
TAACGGTTCTTGacgaattttctttgttttctttggcCATGTTTTGActc
aaaagatttttcattaagACAAATGATTAGTTTTTAGTTTTCGCATTAAT
CTCtatatagcctggatatccggctagactaaaattttagaaaagcaAAA
CTTACAGTAGAATTTTCTTTACTTTCCGGTTACATGAAAACCAAAGATTA
CTTTTTGTGTTTTCGCATTAATTTCTAACGACCTAATGATTGTATTTATC
GAGGCATTTATGACTTTACATTAATTTCtagctaccttaaaggaagaaat
tttggcgggaatttaatttggtggatggcccaaaaagttttttcaaaggg
aatttaatttggcgaatcagcagagaaattaattttggtgggaatttaat
ttggcagattatGGGTTTCAAGGATTAAAATTAaggtgaaaatgtttaaa
atggcCCCTTTTATGacttaaaaagtgaaaaatcgaGCAccatttgagaa
aatttaaatttggcggatggcaggAAAATCTAAATTTGACGGGAGCTTAA
TTTGGTTATTCTGCGAGATTTCCTTTCcctcaaaatttcttcctttaatg
tacaTAATAATTACTTTTATGTCTTTCTAAGGGCTTTTAATGAATTTTCC
ATGGCtcagacttttcaaaaaaaaaaacggcgATTATTTTCAGAGTGAGC
ATTATAAATGACTTCGCATTAATTGATCTTGGGATATAAGATCTAGCTTA
AGTTCAATCATCAATCGTTACAGGCTTTTAATGACTTTTATTACCTAACT
GATAGCTTtcataataatattctaacgaGTTCTTGATGTTTTCTCATTAG
TTGAAAAAATTGCAGTCCGCGcacattttgaaacatttttgctgttgaag
aagaaaatatataattaatagtaatacctcgttgaaaagataattctaaT
CCCGGTGATAtcaagcattttttcaaaattttcgaaaaatgatgatgaga
aaaataaacattttctcTACCAGACTTACCAAAAATTTTTAACCTTTAGc
agccgagagacgtaccacgtacgtcatatatacaggccgagagacgtacc
acgtacgttttgatactggggtcctttcaaagtttaataaaataaagacc
acNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTAAAAGACTTTGTCGAATTGGTGATCATTGTCTTGTTAAG
GCATGGGACTTGTTTATTTCATTGACAAAGAGAGAGTATTAAAAAaggat
ttaaaggttttatagCTTTGTATGGCCGAGATAAc Coding sequence (CDS) from alignment at sc0000569:114110..122994+ >TCONS_00026312 ID=TCONS_00026312|Name=TCONS_00026312|organism=Clytia hemisphaerica|type=CDS|length=1683bp|location=Sequence derived from alignment at sc0000569:114110..122994+ (Clytia hemisphaerica)
ATGGGTGCATCTTTGGTTACGCAAGCAGCCATGGCTTCACAACCACATCA
GAAAATTATACATGCCACcgcaaaagaaaagagaaagctCACAATGGAAG
TATCTTGTGCCAGTACACCAGAATATCGCTTCGATCAATTCATACTTTTA
TGTGAAGAATGTCAAAGAAGAAAACGGGTTATCGAGACAAAACTCAAAGA
AATGTTCGAAAAGATTCACGCCACTTCAAATTTAGATCAACATTTGAGTG
CTGAacaaaaacattacgtcatgagtCTTATAAGCCGGTACCGGCAAATA
CAAGAAGAACAAAACACTTTAATCGAACGTGAAAAAGTTCGATTGCAAAT
GATGAAAAGTGAACTGGGTAGAAAGGAAGAAAGTGTACAGAAAATTCGGA
ATCGTCTGAAGTATGTGATCGCTTTGAATAAGGACCATGAAAATATCATA
ACGCATATTCAACAAGAACGGAAACACTTTTCCGGAAATAATAATTCGAC
AATCACAAATGATTTAAGATTAAGGTATCGTTCACCTGAAAGTGACGAAC
TTCGATTATAAATGGGTGCATCTTTGGTTACGCAAGCAGCCATGGCTTCA
CAACCACATCAGAAAATTATACATGCCACcgcaaaagaaaagagaaagct
CACAATGGAAGTATCTTGTGCCAGTACACCAGAATATCGCTTCGATCAAT
TCATACTTTTATGTGAAGAATGTCAAAGAAGAAAACGGGTTATCGAGACA
AAACTCAAAGAAATGTTCGAAAAGATTCACGCCACTTCAAATTTAGATCA
ACATTTGAGTGCTGAacaaaaacattacgtcatgagtCTTATAAGCCGGT
ACCGGCAAATACAAGAAGAACAAAACACTTTAATCGAACGTGAAAAAGTT
CGATTGCAAATGATGAAAAGTGAACTGGGTAGAAAGGAAGAAAGTGTACA
GAAAATTCGGAATCGTCTGAAGTATGTGATCGCTTTGAATAAGGACCATG
AAAATATCATAACGCATATTCAACAAGAACGGAAACACTTTTCCGGAAAT
AATAATTCGACAATCACAAATGATTTAAGATTAAGGTATCGTTCACCTGA
AAGTGACGAACTTCGATTATAAATGGGTGCATCTTTGGTTACGCAAGCAG
CCATGGCTTCACAACCACATCAGAAAATTATACATGCCACcgcaaaagaa
aagagaaagctCACAATGGAAGTATCTTGTGCCAGTACACCAGAATATCG
CTTCGATCAATTCATACTTTTATGTGAAGAATGTCAAAGAAGAAAACGGG
TTATCGAGACAAAACTCAAAGAAATGTTCGAAAAGATTCACGCCACTTCA
AATTTAGATCAACATTTGAGTGCTGAacaaaaacattacgtcatgagtCT
TATAAGCCGGTACCGGCAAATACAAGAAGAACAAAACACTTTAATCGAAC
GTGAAAAAGTTCGATTGCAAATGATGAAAAGTGAACTGGGTAGAAAGGAA
GAAAGTGTACAGAAAATTCGGAATCGTCTGAAGTATGTGATCGCTTTGAA
TAAGGACCATGAAAATATCATAACGCATATTCAACAAGAACGGAAACACT
TTTCCGGAAATAATAATTCGACAATCACAAATGATTTAAGATTAAGGTAT
CGTTCACCTGAAAGTGACGAACTTCGATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026312-exon-sc0000569-1491911889:114110..114274 | TCONS_00026312-exon-sc0000569-1491911889:114110..114274 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1510915933:114110..114274 | TCONS_00026312-exon-sc0000569-1510915933:114110..114274 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1575043694:114110..114274 | TCONS_00026312-exon-sc0000569-1575043694:114110..114274 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1491911889:116413..116840 | TCONS_00026312-exon-sc0000569-1491911889:116413..116840 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1510915933:116413..116840 | TCONS_00026312-exon-sc0000569-1510915933:116413..116840 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1575043694:116413..116840 | TCONS_00026312-exon-sc0000569-1575043694:116413..116840 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1491911889:120700..120870 | TCONS_00026312-exon-sc0000569-1491911889:120700..120870 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1510915933:120700..120870 | TCONS_00026312-exon-sc0000569-1510915933:120700..120870 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1575043694:120700..120870 | TCONS_00026312-exon-sc0000569-1575043694:120700..120870 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1491911889:122936..122994 | TCONS_00026312-exon-sc0000569-1491911889:122936..122994 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1510915933:122936..122994 | TCONS_00026312-exon-sc0000569-1510915933:122936..122994 | Clytia hemisphaerica | exon |
| TCONS_00026312-exon-sc0000569-1575043694:122936..122994 | TCONS_00026312-exon-sc0000569-1575043694:122936..122994 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000569 | supercontig | sc0000569:114110..122994 + |
Blast
The following BLAST results are available for this feature:
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