TCONS_00026331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026331
Unique NameTCONS_00026331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026331 ID=TCONS_00026331|Name=TCONS_00026331|organism=Clytia hemisphaerica|type=transcript|length=690bp
TAACAGGAATCAATCTACAAGCAATCGAAGCAGAGATCAAAGAACTGAAG
GAAAAAGTTGCTGCTTTTGAAGAACAACCAGAAAGAACgaaCCTTTCACA
TCATCGATTATGAATACTCTGGAGTCAATTACGCCGCTTACGACATAGCT
AATTTCTTCGACGAGTTCCCAGGGAACACGAACATCGACTTTTCATTATT
TCCAAGTGAAGAAACTCAGAGAAAATGGATCAAATATTACTGGATGGAAA
GATTGAAGATAAACGGGAAAGAATGGATGGAGGATGATTGCGCTTCAAAA
ACAATGAATGATTTGTTTCTTCACGTTCAAATCTTCACACTGGTACGCTG
AAATACGTTTGGttgaatatttcaaacaaaagacaaCGGTGATGGACGGT
ATAAGAGAAAAGAcaattgaatgaatgaatgaatggattGCACAAGGCAA
TTAGGTTTTATAAGGGTACTTACGGTGATATCTTTGGATAGGGTAATCCC
ACGTTGAGTTCAATTTTCGAACCTTAGTGGCACACCCTCGTCGATTCGGG
GTGACTGAAAGGATAATTGAATGGATGAAGAGACAGAAAGTGATTGAAAG
ACTCAAATAAATATCTTTTTCGTGATGTATATTTAATACGTAAAAGAAAG
CGAAGAGAATTAAGAAAAAGGGTCGAGTTTAATTTTAATT
Run BLAST on NCBI

transcript from alignment at sc0000569:64568..68524-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026331 ID=TCONS_00026331|Name=TCONS_00026331|organism=Clytia hemisphaerica|type=transcript|length=3957bp|location=Sequence derived from alignment at sc0000569:64568..68524- (Clytia hemisphaerica)
TAACAGGAATCAATCTACAAGCAATCGAAGCAGAGATCAAAGAACTGAAG
GAAAAAGTTGCTGCTTTTGAAGAACAACCAGAAAGAACGTATTGTCATAA
TGATATCAATTGCCCAAATCTCATCTACGATGGGGATAAAGGTATTGCAT
TGGTTTTATTCAACACTTACCAGACACTTTTCGTGAGATAAATTCACGTT
GCTTTCCAGTTAGGTTGCGCCACCTTTACATAAATTACGTCAGGAACATC
ACTTGCCTCGTTTTGAAATTATTTTGATTTTCTGAAGACCTTTGAGCTAT
GATATTTACACCTTTGAAACCCTTGAAATTCAGAAACCTGGAAGGGATTT
TTGGACTTTTTAAATGCTAAATTTTCCCCACTTCCTGAGGAGTAAAGTAA
AAAGAACCTAAAAGTCAAATGAAGAAATTGAAGCTACAAAGAAGTCTCGA
TCGTTTTAGACAGTGGCGTGGTAGTTTTTTATAAGCAATTTATGAAAAAT
AGCAAAAATTTGACATATTTTGAAATGGCTGTAGCTCTTGATGTAAAAAA
GATATTCAAGTTTTGTTTCAATACTCTGAAATCAGATTTTCAATAATTAT
CAAATTATGATGCTGTGCAGTGCACCAAAACTGTTAAAAGTGATTATTTC
GAAATTCGCTCCTAATTATGAAAATATGACGTCATTACGTCAACTTTTTT
TGGAAAATTTTCCTTTTGCCAATGTCAACATATAGTGAAAATTTCAGAGT
GATTTCTTTATTAGATAAAAAATATTGAAATTTGTAGATTTTATGAAAAT
CAAGCCTTTTTGCTTAAAACATTTGGTCATTTTTGAAAAGTGCTGACGTC
ATCAAATTTAGTACTGGTTTAAAAAAAAATTTCTTTGGAAAATGAAGTAA
TATAAAAATTGGGAAAGGTTCTGAAATTTCACGACAATTAGTCTCAAAGT
CATAAACCTCCAGGAAAAAATCTGTCACGGGGATGTTTTGTACACCAGAT
TTTGCTCGGCAACTCCAGAAAGTTTTTCCCGACACACCACTGGACGTTTA
GTAGAAGCTTGAGAAATATTTTGAAGTTGAAATATTTTGAGCAATTGCGA
ATATGCAATATGTGAAATAAGTTGATTGAAATATTTTAGAATGGTGCTGT
GAGAGGCATTTATCAATATCTTTGAAATGTTTTCTTTAACCCTTTTTATG
CATTATATTCACATAGTTATACTTTCAGATTTTGATTACTGCCATTTTTG
AAAGCTTGAAGTTCTATATGACATTTTTCAGTACTACAGCTTTTGTAGCG
CTTTAAAGATATATTTTGCCTATAAAAAGACTTTGAAAAATTGGAAACCT
TGAAACCCCGGGGGAGGGGTACTTAGGCAAATGGAGGGTACGGTATGTGC
CGCCCTTAAGGGTACCTATTTTGGACTTCCAAAGTCCCGCTAAGGGTCGG
AAAAATAGAAAAGTTTCAACTTTTTACTCCCTGAAAGATCGGAATTTGAT
CAAAATTTGTCAACTTTGTCCAGCTAAGAGCCTTAAAGTTCCCAAAATTG
TCCTTTGTTTTCTCCTTTTTAGTCCCGGTAAGGGTCCAAAGTTCGAAGGT
CGGGCGGCATCCCCCCCGTCAGCTCGCAACCCTAGTACCCCCCGGGCTTG
AAACCCTTTAAAATTATGTTTTCAAGACTTTCAAACCGATGAAACCCTTA
CAAATTTAGCCAAAAGGCCCCTTGAAATCCTTGAAATTGGTCCTAAAATA
TGGGTGGCCATCATGCTGTTCTAAACATCAGAGTAAACATCTTTTATTTT
TTAGGAACCTTTCACATCATCGATTATGAATACTCTGGAGTCAATTACGC
CGCTTACGACATAGCTAATTTCTTCGACGAGTTCCCAGGTACTTCAGTAG
TCTAGTTTCAGAAGCAAGGTTGCAAAGCAACTCTTAGCGGGCTTTTTAAT
GGAAAGAGGGAAGGACACTCAGGCAAAATTCGATAGGGAGGTGTGCTGCT
GGTCAGGGTTTTAGGCTCTGAAGATATCTGACAGTGTCCCAAATTTACTA
AATTTCAAGATGTGTATCTGACAGGGTCGACATTTTTGCTATTTTGAACC
ACTTCCAAAGTGGAAATTTTTCGACTTTCGTTTTGACAGGGCCCCAAATT
TACCAAACATTCATATCTGACAGGGTCCATTTTTCAAACTCCAGCGGCAC
GTCCAAATCGGCCGTCAAGGTCAGTCCGTTTTTTTTTTTTTTGGGGGGGG
GGCGGTGTCGGCGCAAATAGCACATAGCAAATAGCGTCCTGATCTTATTA
GTGTACATCGAAAAGTTCGGTTTGCTTCTAAAAACTTGCAAAGGACTTAA
TACTATCCCTTACTATCGCTGACACCAATGCTAGTGTGAATGCTCTCTAG
AACTAGAACAAGTTTGGATAAAAATAAAAATAGATTTTTCGATATCTCAA
TATCGTTAAATCATTGTTTTTCCAGGGAACACGAACATCGACTTTTCATT
ATTTCCAAGTGAAGAAACTCAGAGAAAATGGATCAAATATTACTGGATGG
AAAGATTGAAGATAAACGGTATTCTCATAACCAAACTAAATAAAATGGGA
TAGTTATCTACAAATCTTGCCACTATACAAGTAGAGGAAAGGAGTCAGTA
TCAGAAGTATCAGAATTTAAATACGCCACATAGGGGGTGGAATTTTAAAA
AGAAAATCCTAAAAAAGTCACATAGTCAAAGACTATTTAAAAATGTTTTT
GACACCAAAGAAGCGTCGAATAAGTGTATTTCGACATACACATTTTGGTA
TCAAAAATTAACATAATAGAGTGAATATTATATCTTTCGATAGTGCGCCA
TCCGCGAAATTAAAGCCTCACGAGTTTCGCATATGAGCTCAATCACGCAA
TTAAATCCCTGTGAAATTTTATCCCCTTAAAGTAAATACGGAGCTAAACG
ATAAAATATTGTTAATATTTTCGATTGTAGGGAAAGAATGGATGGAGGAT
GATTGCGCTTCAAAAACAATGAATGATTTGTTTCTTCACGTTCAAATCTT
CACACTGGTTAGTGTAACCCTTTGCGCGCGCTGTTTTTTTTTGAAAAAGT
TGAAATTTTTCTAATTTTTTTATTTTAAAACTCAAAACTTTACAGTTCGA
TAAAAGATTGTAGCTTTTGATTTAGAAGATGGTTTTGGTACCATTGGAAA
GCTATTTTTGGACTCTTTCTAAAAGCAATTTGGTTACTACCCTACAATAT
CTTCTTTCCGATGCCAAAGTGAAAGGTGATGATAATGATAATATCTTTGA
AGTATCCTAATCCAAATACCAAATCAATGACAATGTCCACAAACTTTTTG
TCCCTATAGTTACTTTTTTTTCTCACTGTTGTGTACAGGTTTCGCACATT
TTGTGGGGAGTATGGGCACTAGTCCAAGCACGTCATTTGTCCAATCCTAC
TGAAATGAACGGGTGAGTCAAGTCACGCAAAAATGAATCTTTGTCTGCTA
AAGATTAAGGTAGTTGTCCATGAGGAATAATGCGATAGAGACTTAGAAGA
AAAGATACCAATCTTTTTACACAACACGAGGATTTAATAAGTTGTATCAT
TTTTTCTAGGTACGCTGAAATACGTTTGGTTGAATATTTCAAACAAAAGA
CAACGGTGATGGACGGTATAAGAGAAAAGACAATTGAATGAATGAATGAA
TGGATTGCACAAGGCAATTAGGTTTTATAAGGGTACTTACGGTGATATCT
TTGGATAGGGTAATCCCACGTTGAGTTCAATTTTCGAACCTTAGTGGCAC
ACCCTCGTCGATTCGGGGTGACTGAAAGGATAATTGAATGGATGAAGAGA
CAGAAAGTGATTGAAAGACTCAAATAAATATCTTTTTCGTGATGTATATT
TAATACGTAAAAGAAAGCGAAGAGAATTAAGAAAAAGGGTCGAGTTTAAT
TTTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014792XLOC_014792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026331-exon-sc0000569-1575043694:68437..68524TCONS_00026331-exon-sc0000569-1575043694:68437..68524Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1575043694:66637..66720TCONS_00026331-exon-sc0000569-1575043694:66637..66720Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1575043694:65957..66049TCONS_00026331-exon-sc0000569-1575043694:65957..66049Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1575043694:65468..65544TCONS_00026331-exon-sc0000569-1575043694:65468..65544Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1575043694:64568..64915TCONS_00026331-exon-sc0000569-1575043694:64568..64915Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1510915933:68437..68524TCONS_00026331-exon-sc0000569-1510915933:68437..68524Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1510915933:66637..66720TCONS_00026331-exon-sc0000569-1510915933:66637..66720Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1510915933:65957..66049TCONS_00026331-exon-sc0000569-1510915933:65957..66049Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1510915933:65468..65544TCONS_00026331-exon-sc0000569-1510915933:65468..65544Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1510915933:64568..64915TCONS_00026331-exon-sc0000569-1510915933:64568..64915Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1491911889:68437..68524TCONS_00026331-exon-sc0000569-1491911889:68437..68524Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1491911889:66637..66720TCONS_00026331-exon-sc0000569-1491911889:66637..66720Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1491911889:65957..66049TCONS_00026331-exon-sc0000569-1491911889:65957..66049Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1491911889:65468..65544TCONS_00026331-exon-sc0000569-1491911889:65468..65544Clytia hemisphaericaexon
TCONS_00026331-exon-sc0000569-1491911889:64568..64915TCONS_00026331-exon-sc0000569-1491911889:64568..64915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000569supercontigsc0000569:64568..68524 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.28752	0.492697	0	0.563443	0	0.113396	0	0	0	0	0	0	0	0	0	0	0	0	0.342601	0	0.483246	1.08901	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top