TCONS_00026332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026332
Unique NameTCONS_00026332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026332 ID=TCONS_00026332|Name=TCONS_00026332|organism=Clytia hemisphaerica|type=transcript|length=1360bp
ttcaGAGCTAAACAAAATGTTAACAGAAAGTGAACATACGAGGATAAATG
GTATCCCTCATTATGAGGTGACTGTAAAGGACGATTGTCTCGATGACCTT
TCTAAACAATtgttaaatcaaatcaaaaatggatggaaaataGAGGGAAA
ATTGAATTACAGTGAAGGAACTACAAATGATTTATATGGATTCCGTATAA
AAAAAGACCAGCAAAACGAAATTGTACTATTTCGTATATATGGTGCACAA
ACTGAACTCATGATTGACCGGGAATTAGAATTAGTTAGTTTTATGTTACT
ATCTAAGAATGGTTTAGCTACAAATTTATATTGTACCTTTGAGAACGGTT
TTTGTTACCAATATCAACAAGGAAGAACGCTGACACCAATAGATTTGACA
GAAgagttatttttaaagaaaacagcTGAACTAGTAGCACGGTTGCATTC
GTTAGATTATTCCAATGTTTCTGGTAAAAAACTATTTGAATCTAACAGAG
GAGATGCATTTTCAGATATTGACCGTTACATGAATTTACTGAAGATCAAT
GGTAATGATGATGTGAACAGCGTTAGCACTGACAATTGCTTTCACTTATT
TCCGAATTCACCaTCTTTAACAGGAATCAATCTACAAGCAATCGAAGCAG
AGATCAAAGAACTGAAGGAAAAAGTTGCTGCTTTTGAAGAACAACCAGAA
AGAACGTATTGTCATAATGATATCAATTGCCCAAATCTCATCTACGATGG
GGATAAAGgaaCCTTTCACATCATCGATTATGAATACTCTGGAGTCAATT
ACGCCGCTTACGACATAGCTAATTTCTTCGACGAGTTCCCAGGGAACACG
AACATCGACTTTTCATTATTTCCAAGTGAAGAAACTCAGAGAAAATGGAT
CAAATATTACTGGATGGAAAGATTGAAGATAAACGGGAAAGAATGGATGG
AGGATGATTGCGCTTCAAAAACAATGAATGATTTGTTTCTTCACGTTCAA
ATCTTCACACTGGTACGCTGAAATACGTTTGGttgaatatttcaaacaaa
agacaaCGGTGATGGACGGTATAAGAGAAAAGAcaattgaatgaatgaat
gaatggattGCACAAGGCAATTAGGTTTTATAAGGGTACTTACGGTGATA
TCTTTGGATAGGGTAATCCCACGTTGAGTTCAATTTTCGAACCTTAGTGG
CACACCCTCGTCGATTCGGGGTGACTGAAAGGATAATTGAATGGATGAAG
AGACAGAAAGTGATTGAAAGACTCAAATAAATATCTTTTTCGTGATGTAT
ATTTAATACGTAAAAGAAAGCGAAGAGAATTAAGAAAAAGGGTCGAGTTT
AATTTTAATT
Run BLAST on NCBI

transcript from alignment at sc0000569:64568..69968-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026332 ID=TCONS_00026332|Name=TCONS_00026332|organism=Clytia hemisphaerica|type=transcript|length=5401bp|location=Sequence derived from alignment at sc0000569:64568..69968- (Clytia hemisphaerica)
TTCAGAGCTAAACAAAATGTTAACAGAAAGTGAACATACGAGGATAAATG
GTATCCCTCATTATGAGGTGACTGTAAAGGACGATTGTCTCGATGACCTT
TCTAAACAATTGTTAAATCAAATCAAAAATGGATGGAAAATAGAGGGAAA
ATTGAATTACAGTGAAGGAACTACAAATGATTTATATGGATTCCGTATAA
AAAAAGACCAGCAAAACGAAATTGTACTATTTCGTATATATGGTGCACAA
ACTGAACTCATGATTGACCGGGAATTAGAATTAGTTAGTTTTATGTTACT
ATCTAAGAATGGTTTAGCTACAAATTTATATTGTACCTTTGAGAACGGTT
TTTGTTACCAATATCAACAAGGAAGAACGCTGACACCAATAGATTTGACA
GAAGAGTTATTTTTAAAGAAAACAGCTGAACTAGTAGCACGGTTGCATTC
GTTAGATTATTCCAATGTTTCTGGTAAAAAACTATTTGAATCTAACAGAG
GAGATGCATTTTCAGATATTGACCGTTACATGAATTTACTGAAGATCAAT
GGTAATGATGATGTGAACAGCGTTAGCACTGACAATTGCTTTCACTTATT
TCCGAATTCACCGTAAGTGTTTACTTTCTAGAATCCTTCTAATTCAAAAA
GTTCAAAAAAGACAATATACCAATTCAAATATTTAAAGGTTTTATTTTTA
CATAAGTGTCCCCGTTTCATATCAGACATATATTTCTACCATCTATTGTC
TACCTATTGTTATATTATGCTGATATAAGCAAAAAAAATGTTTATTTTTC
CCTCTTTCTGACCAAGCACACTATGAAACCTTTTTAAAGTGGCATTGAAA
AAAATTCCATTCAAGCATCTAATCAAACCCTTCGACCTCTAACTTTACTA
ATCAAATATTTCGATGTAACAACCATCACTGACACTTATTTGAGCAACAC
AATAAATGTGCAACTTAAAAAGATGACAGAGATAGTAAAGAGCTCCCAGA
CATTCTAATCTTACTAAATACTAGTAGTGTTGGTGATTTTGGAAAGTCTG
TTTTTCTCTTCCTGCTTTTGTAAATATTTATCGTATTCATCATGCAATTT
TTAGCAATTTCCATCCGAATTATTAAAGTGGCAAAAAGTGTCTTATCGAC
TGTGAAGTTGGTCATTTTGGCCTTTTTAGGCCTACTTCAAAGGACTGTAA
CTTTTTATCCAAGAAAGATACGAAAAATCTGAACAAATATTTGAAATCAG
CAAGGTTTAAATTTTCAAAATAGCTTGATGCCATTATTCTTAAAACAGTA
GACAAAATCTTCATTTTTTTTCATCCTTTTTCTCGTTTTTCTTCTTCATT
TTTCATATTAAAAAAAACGAGATAAGCGTTGCTCGTGGCGTAATTAATGA
AAAGGTCTGTTCTCCTTTCACTGTTTTATTTGTTTTCAGATCTTTAACAG
GAATCAATCTACAAGCAATCGAAGCAGAGATCAAAGAACTGAAGGAAAAA
GTTGCTGCTTTTGAAGAACAACCAGAAAGAACGTATTGTCATAATGATAT
CAATTGCCCAAATCTCATCTACGATGGGGATAAAGGTATTGCATTGGTTT
TATTCAACACTTACCAGACACTTTTCGTGAGATAAATTCACGTTGCTTTC
CAGTTAGGTTGCGCCACCTTTACATAAATTACGTCAGGAACATCACTTGC
CTCGTTTTGAAATTATTTTGATTTTCTGAAGACCTTTGAGCTATGATATT
TACACCTTTGAAACCCTTGAAATTCAGAAACCTGGAAGGGATTTTTGGAC
TTTTTAAATGCTAAATTTTCCCCACTTCCTGAGGAGTAAAGTAAAAAGAA
CCTAAAAGTCAAATGAAGAAATTGAAGCTACAAAGAAGTCTCGATCGTTT
TAGACAGTGGCGTGGTAGTTTTTTATAAGCAATTTATGAAAAATAGCAAA
AATTTGACATATTTTGAAATGGCTGTAGCTCTTGATGTAAAAAAGATATT
CAAGTTTTGTTTCAATACTCTGAAATCAGATTTTCAATAATTATCAAATT
ATGATGCTGTGCAGTGCACCAAAACTGTTAAAAGTGATTATTTCGAAATT
CGCTCCTAATTATGAAAATATGACGTCATTACGTCAACTTTTTTTGGAAA
ATTTTCCTTTTGCCAATGTCAACATATAGTGAAAATTTCAGAGTGATTTC
TTTATTAGATAAAAAATATTGAAATTTGTAGATTTTATGAAAATCAAGCC
TTTTTGCTTAAAACATTTGGTCATTTTTGAAAAGTGCTGACGTCATCAAA
TTTAGTACTGGTTTAAAAAAAAATTTCTTTGGAAAATGAAGTAATATAAA
AATTGGGAAAGGTTCTGAAATTTCACGACAATTAGTCTCAAAGTCATAAA
CCTCCAGGAAAAAATCTGTCACGGGGATGTTTTGTACACCAGATTTTGCT
CGGCAACTCCAGAAAGTTTTTCCCGACACACCACTGGACGTTTAGTAGAA
GCTTGAGAAATATTTTGAAGTTGAAATATTTTGAGCAATTGCGAATATGC
AATATGTGAAATAAGTTGATTGAAATATTTTAGAATGGTGCTGTGAGAGG
CATTTATCAATATCTTTGAAATGTTTTCTTTAACCCTTTTTATGCATTAT
ATTCACATAGTTATACTTTCAGATTTTGATTACTGCCATTTTTGAAAGCT
TGAAGTTCTATATGACATTTTTCAGTACTACAGCTTTTGTAGCGCTTTAA
AGATATATTTTGCCTATAAAAAGACTTTGAAAAATTGGAAACCTTGAAAC
CCCGGGGGAGGGGTACTTAGGCAAATGGAGGGTACGGTATGTGCCGCCCT
TAAGGGTACCTATTTTGGACTTCCAAAGTCCCGCTAAGGGTCGGAAAAAT
AGAAAAGTTTCAACTTTTTACTCCCTGAAAGATCGGAATTTGATCAAAAT
TTGTCAACTTTGTCCAGCTAAGAGCCTTAAAGTTCCCAAAATTGTCCTTT
GTTTTCTCCTTTTTAGTCCCGGTAAGGGTCCAAAGTTCGAAGGTCGGGCG
GCATCCCCCCCGTCAGCTCGCAACCCTAGTACCCCCCGGGCTTGAAACCC
TTTAAAATTATGTTTTCAAGACTTTCAAACCGATGAAACCCTTACAAATT
TAGCCAAAAGGCCCCTTGAAATCCTTGAAATTGGTCCTAAAATATGGGTG
GCCATCATGCTGTTCTAAACATCAGAGTAAACATCTTTTATTTTTTAGGA
ACCTTTCACATCATCGATTATGAATACTCTGGAGTCAATTACGCCGCTTA
CGACATAGCTAATTTCTTCGACGAGTTCCCAGGTACTTCAGTAGTCTAGT
TTCAGAAGCAAGGTTGCAAAGCAACTCTTAGCGGGCTTTTTAATGGAAAG
AGGGAAGGACACTCAGGCAAAATTCGATAGGGAGGTGTGCTGCTGGTCAG
GGTTTTAGGCTCTGAAGATATCTGACAGTGTCCCAAATTTACTAAATTTC
AAGATGTGTATCTGACAGGGTCGACATTTTTGCTATTTTGAACCACTTCC
AAAGTGGAAATTTTTCGACTTTCGTTTTGACAGGGCCCCAAATTTACCAA
ACATTCATATCTGACAGGGTCCATTTTTCAAACTCCAGCGGCACGTCCAA
ATCGGCCGTCAAGGTCAGTCCGTTTTTTTTTTTTTTGGGGGGGGGGCGGT
GTCGGCGCAAATAGCACATAGCAAATAGCGTCCTGATCTTATTAGTGTAC
ATCGAAAAGTTCGGTTTGCTTCTAAAAACTTGCAAAGGACTTAATACTAT
CCCTTACTATCGCTGACACCAATGCTAGTGTGAATGCTCTCTAGAACTAG
AACAAGTTTGGATAAAAATAAAAATAGATTTTTCGATATCTCAATATCGT
TAAATCATTGTTTTTCCAGGGAACACGAACATCGACTTTTCATTATTTCC
AAGTGAAGAAACTCAGAGAAAATGGATCAAATATTACTGGATGGAAAGAT
TGAAGATAAACGGTATTCTCATAACCAAACTAAATAAAATGGGATAGTTA
TCTACAAATCTTGCCACTATACAAGTAGAGGAAAGGAGTCAGTATCAGAA
GTATCAGAATTTAAATACGCCACATAGGGGGTGGAATTTTAAAAAGAAAA
TCCTAAAAAAGTCACATAGTCAAAGACTATTTAAAAATGTTTTTGACACC
AAAGAAGCGTCGAATAAGTGTATTTCGACATACACATTTTGGTATCAAAA
ATTAACATAATAGAGTGAATATTATATCTTTCGATAGTGCGCCATCCGCG
AAATTAAAGCCTCACGAGTTTCGCATATGAGCTCAATCACGCAATTAAAT
CCCTGTGAAATTTTATCCCCTTAAAGTAAATACGGAGCTAAACGATAAAA
TATTGTTAATATTTTCGATTGTAGGGAAAGAATGGATGGAGGATGATTGC
GCTTCAAAAACAATGAATGATTTGTTTCTTCACGTTCAAATCTTCACACT
GGTTAGTGTAACCCTTTGCGCGCGCTGTTTTTTTTTGAAAAAGTTGAAAT
TTTTCTAATTTTTTTATTTTAAAACTCAAAACTTTACAGTTCGATAAAAG
ATTGTAGCTTTTGATTTAGAAGATGGTTTTGGTACCATTGGAAAGCTATT
TTTGGACTCTTTCTAAAAGCAATTTGGTTACTACCCTACAATATCTTCTT
TCCGATGCCAAAGTGAAAGGTGATGATAATGATAATATCTTTGAAGTATC
CTAATCCAAATACCAAATCAATGACAATGTCCACAAACTTTTTGTCCCTA
TAGTTACTTTTTTTTCTCACTGTTGTGTACAGGTTTCGCACATTTTGTGG
GGAGTATGGGCACTAGTCCAAGCACGTCATTTGTCCAATCCTACTGAAAT
GAACGGGTGAGTCAAGTCACGCAAAAATGAATCTTTGTCTGCTAAAGATT
AAGGTAGTTGTCCATGAGGAATAATGCGATAGAGACTTAGAAGAAAAGAT
ACCAATCTTTTTACACAACACGAGGATTTAATAAGTTGTATCATTTTTTC
TAGGTACGCTGAAATACGTTTGGTTGAATATTTCAAACAAAAGACAACGG
TGATGGACGGTATAAGAGAAAAGACAATTGAATGAATGAATGAATGGATT
GCACAAGGCAATTAGGTTTTATAAGGGTACTTACGGTGATATCTTTGGAT
AGGGTAATCCCACGTTGAGTTCAATTTTCGAACCTTAGTGGCACACCCTC
GTCGATTCGGGGTGACTGAAAGGATAATTGAATGGATGAAGAGACAGAAA
GTGATTGAAAGACTCAAATAAATATCTTTTTCGTGATGTATATTTAATAC
GTAAAAGAAAGCGAAGAGAATTAAGAAAAAGGGTCGAGTTTAATTTTAAT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014792XLOC_014792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026332-exon-sc0000569-1575043694:69357..69968TCONS_00026332-exon-sc0000569-1575043694:69357..69968Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1575043694:68384..68529TCONS_00026332-exon-sc0000569-1575043694:68384..68529Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1575043694:66637..66720TCONS_00026332-exon-sc0000569-1575043694:66637..66720Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1575043694:65957..66049TCONS_00026332-exon-sc0000569-1575043694:65957..66049Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1575043694:65468..65544TCONS_00026332-exon-sc0000569-1575043694:65468..65544Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1575043694:64568..64915TCONS_00026332-exon-sc0000569-1575043694:64568..64915Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1510915933:69357..69968TCONS_00026332-exon-sc0000569-1510915933:69357..69968Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1510915933:68384..68529TCONS_00026332-exon-sc0000569-1510915933:68384..68529Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1510915933:66637..66720TCONS_00026332-exon-sc0000569-1510915933:66637..66720Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1510915933:65957..66049TCONS_00026332-exon-sc0000569-1510915933:65957..66049Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1510915933:65468..65544TCONS_00026332-exon-sc0000569-1510915933:65468..65544Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1510915933:64568..64915TCONS_00026332-exon-sc0000569-1510915933:64568..64915Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1491911889:69357..69968TCONS_00026332-exon-sc0000569-1491911889:69357..69968Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1491911889:68384..68529TCONS_00026332-exon-sc0000569-1491911889:68384..68529Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1491911889:66637..66720TCONS_00026332-exon-sc0000569-1491911889:66637..66720Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1491911889:65957..66049TCONS_00026332-exon-sc0000569-1491911889:65957..66049Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1491911889:65468..65544TCONS_00026332-exon-sc0000569-1491911889:65468..65544Clytia hemisphaericaexon
TCONS_00026332-exon-sc0000569-1491911889:64568..64915TCONS_00026332-exon-sc0000569-1491911889:64568..64915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000569supercontigsc0000569:64568..69968 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.48453	0.43686	0.504679	0.538349	0	0	0	0	0.324966	0.50933	0	0.730616	0.888797	0.906146	0.841067	1.68626	0.631055	0.423827	1.51964	0.350911	0.595757	1.36032	0.590123	0.475015	0	0	0.197396	0.386295	0.320804	0.677793
Blast
[Close]
BLAST of TCONS_00026332 vs. Swiss-Prot (Human)
Match: EKI2 (Ethanolamine kinase 2 OS=Homo sapiens GN=ETNK2 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 7.206e-45
Identity = 93/293 (31.74%), Postives = 153/293 (52.22%), Query Frame = 2 
Query:   38 TRINGIPHYEVTVKDDCLDDLSKQLLNQIKNGWKIEG--KLNYSEGTTNDLYGFRIKKDQQNEIVLFRIYGAQTELMIDRELELVSFMLLSKNGLATNLYCTFENGFCYQYQQGRTLTPIDLTEELFLKKTAELVARLHSLDYSNVSGKKLFESNRGDAFSDIDRYMNLLKINGNDDVNSVSTDNCFHLFPNSPSLTGINLQXXXXXXXXXXXXXXXFEEQPERTYCHNDINCPNLIYDGDKGTFHIIDYEYSGVNYAAYDIANFFDEFPGNTNIDFSLFPSEETQRKWIKYY 910
             R   + ++ ++V  D +   + +L+ +++  WK E      +++G TN L    +++D Q+  VL R+YG +TEL++DRE E+ +F LL  +  A  LYCTF+NG CY+Y QG  L P  + E    +  A  +A++H++  +    K +        +  +  Y  L+K    +++N              PSL+    +    E +    K    + +    +CHND+ C N+IYD  KG    IDYEY+G NY A+DI N F+EF G   +D+ L+P+ ETQ +W+ YY
Sbjct:   46 PRAAAVAYFGISVDPDDILPGALRLIQELRPHWKPEQVRTKRFTDGITNKLVACYVEEDMQD-CVLVRVYGERTELLVDRENEVRNFQLLRAHSCAPKLYCTFQNGLCYEYMQGVALEPEHIREPRLFRLIALEMAKIHTIHANGSLPKPIL-------WHKMHNYFTLVK----NEIN--------------PSLSADVPKVEVLERELAWLKEHLSQLESPVVFCHNDLLCKNIIYDSIKGHVRFIDYEYAGYNYQAFDIGNHFNEFAGVNEVDYCLYPARETQLQWLHYY 312
The following BLAST results are available for this feature:
BLAST of TCONS_00026332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EKI27.206e-4531.74Ethanolamine kinase 2 OS=Homo sapiens GN=ETNK2 PE=... [more]
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