TCONS_00026349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026349
Unique NameTCONS_00026349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026349 ID=TCONS_00026349|Name=TCONS_00026349|organism=Clytia hemisphaerica|type=transcript|length=886bp
CAACATTATAATGAGTTCAGGATATTATATCATTTCATTATTGTAAGACA
TTCGTACTATTGCGATTTCCGTGATTAGCTTGTTTGTAAGATTATTCAAT
TGTCCTAACAATTCCATTGTCTTTAGAATTCTATTGTTGACCTGACCTAA
GTTATTAGTATAAAAGAACCATGCTTGGACTTAAAAATCACACTCAAACA
GTGGAACCTAATCTAAAGAATTGGCTAACAACCACCAATGATGAACTCGA
TAGTGGTACTGATCAGCTATGCGCTTTTGAACTCTGTTTCCGCATTCTTT
CCGGTAAAAATCACCGGACCTACCCCACCACCGGTACCATGCTCCAACAG
TCAATGTCACGGAAAGCCCGATGGTAACTTTGAATATATTAACCCGAAAA
CATACAAGAAGAACCAACATTATTTCTTACAATGTAGTGATGGAGTAGCC
TCTTGTCAAGCATGTTGGCCATCCAGTCTAGTATTCAAAGAGGATTGCAA
CCAATGTCTTTATTCTCAACATGATGAATGTGTTACATCTAAACCGTTCA
AACCAGCTACCACCTTCGCATGTCCGGATATATGTCCACAACAAGGTCCT
AAATTTTCTGGAAACATTAACGATCCAAACCAGCCAAGACAGTATGTAGC
ATGTTGGAAGGGTGTTACCGTCGGGTGTATTTCTTGTCCTCCCAAATTGG
TTTTTAACAGACGTTGGAATGCATGTCTTCATTCAGGTGGATTTAAACAA
GTTCCACCAGGTCGTACAGATTTGGATTATCCACCTTACGGAAAGTAAAC
CAACTGGAACGGAACAGAATCTTCATAATTTCTATACCtaatttcttgat
tttatttttcaaaaaccaaattttaCTTATAGTTAC
Run BLAST on NCBI

transcript from alignment at sc0000569:189228..191246-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026349 ID=TCONS_00026349|Name=TCONS_00026349|organism=Clytia hemisphaerica|type=transcript|length=2019bp|location=Sequence derived from alignment at sc0000569:189228..191246- (Clytia hemisphaerica)
CAACATTATAATGAGTTCAGGATATTATATCATTTCATTATTGTAAGACA
TTCGTACTATTGCGATTTCCGTGATTAGCTTGTTTGTAAGATTATTCAAT
TGTCCTAACAATTCCATTGTCTTTAGAATTCTATTGTTGACCTGACCTAA
GTTATTAGTATAAAAGAACCATGCTTGGACTTAAAAATCACACTCAAACA
GTGGAACCTAATCTAAAGAATTGGCTAACAACCACCAATGATGAACTCGA
TAGTGGTACTGATCAGCTATGCGCTTTTGAACTGTAAGTATTTTCATTCG
ATTTCTTTTTTATTTCTTGATACCCGTAGTGCACCACTACCAGTACTTGA
TAACCTTTTACCTCTTCGACTGAAGATCCTATCTCTTATATTTCATTTTT
CTTTTCACGCTTATACATATTTATAACAAATTTTCTTCAAACATGCTTGC
AATGAATATTTCTGATTATTTTGATAAGTATTTTTCAACAGATGAATGTA
ATATCATCTTGCAAGACGAACTGATTTTCTCATTTCTAAGTTTTTCATTT
CTTATTTCTCAGCTGTTTCCGCATTCTTTCCGGTAAAAATCACCGGACCT
ACCCCACCACCGGTACCATGCTCCAACAGTCAATGTCACGGAAAGCCCGA
TGGTAACTTTGAATATATTAACCCGAAAACATACAAGAAGAACCAACATT
ATTTCTTACAATGTAGTGATGGAGTAGCCTCTTGTCAAGCATGTTGGCCA
TCCAGTCTAGTATTCAAAGAGGATTGCAACCAATGTCTTTATTCTCAACA
TGGTAAGATATTGTTTATTTGTTTTCTAAAAATTTGAATCGAGTTTGTTT
GAAAGTGACAATGTCGGAAAATATCTAAGTATATATAAGTTTGTTTTATC
ATTTAAAAGAACAAGAAATAAAGGGAATTACCAAAAGACACCCAGAATAT
GTCCAAATTTTTGACTTTTAGTCAATCCTATCCATGCTGATGTCGGATAT
GAAACATTTTGACAAAGAGTATTTTTATATCCACTATTTTTCAGACGAAT
GTGTTACATCTAAACCGTTCAAACCAGCTACCACCTTCGCATGTCCGGAT
ATATGTCCACAACAAGGTCCTAAATTTTCTGGAAACATNATCCCTAAGTT
TTTCATTTCTTATTTCTCAGCTGTTTCCGCATTCTTTCCGGTAAAAATCA
CCGGACCTACCCCACCACCGGTACCATGCTCCAACAGTCAATGTCACGGA
AAGCCCGATGGTAACTTTGAATATATTAACCCGAAAACATACAAGAAGAA
CCAACATTATTTCTTACAATGTAGTGATGGAGTAGCCTCTTGTCAAGCAT
GTTGGCCATCCAGTCTAGTATTCAAAGAGGATTGCAACCAATGTCTTTAT
TCTCAACATGGTAAGATATTGTTTATTTGTTTTCTAAAAATTTGAATCGA
GTTTGTTTGAAAGTGACAATGTCGGAAAATATCTAAGTATATATAAGTTT
GTTTTATCATTTAAAAGAACAAGAAATAAAGGGAATTACCAAAAGACACC
CAGAATGTGTCCAAATTTTTGACTTTTAGTTAATCTTATCCATGCTGATG
TCGGATATGAAACATTTTGACAAAGAGTATTTTATTTTATATCCACTATT
TTTCAGATGAATGTGTTACATCTAAACCGTTCAAACCAGCTACCACCTTC
GCATGTCCGGATATATGTCCACAACAAGGTCCTAAATTTTCTGGAAACAT
TAACGATCCAAACCAGCCAAGACAGTATGTAGCATGTTGGAAGGGTGTTA
CCGTCGGGTGTATTTCTTGTCCTCCCAAATTGGTTTTTAACAGACGTTGG
AATGCATGTCTTCATTCAGGTGGATTTAAACAAGTTCCACCAGGTCGTAC
AGATTTGGATTATCCACCTTACGGAAAGTAAACCAACTGGAACGGAACAG
AATCTTCATAATTTCTATACCTAATTTCTTGATTTTATTTTTCAAAAACC
AAATTTTACTTATAGTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014797XLOC_014797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026349-exon-sc0000569-1575043694:190964..191246TCONS_00026349-exon-sc0000569-1575043694:190964..191246Clytia hemisphaericaexon
TCONS_00026349-exon-sc0000569-1575043694:190445..190684TCONS_00026349-exon-sc0000569-1575043694:190445..190684Clytia hemisphaericaexon
TCONS_00026349-exon-sc0000569-1575043694:189228..189590TCONS_00026349-exon-sc0000569-1575043694:189228..189590Clytia hemisphaericaexon
TCONS_00026349-exon-sc0000569-1510915933:190964..191246TCONS_00026349-exon-sc0000569-1510915933:190964..191246Clytia hemisphaericaexon
TCONS_00026349-exon-sc0000569-1510915933:190445..190684TCONS_00026349-exon-sc0000569-1510915933:190445..190684Clytia hemisphaericaexon
TCONS_00026349-exon-sc0000569-1510915933:189228..189590TCONS_00026349-exon-sc0000569-1510915933:189228..189590Clytia hemisphaericaexon
TCONS_00026349-exon-sc0000569-1491911889:190964..191246TCONS_00026349-exon-sc0000569-1491911889:190964..191246Clytia hemisphaericaexon
TCONS_00026349-exon-sc0000569-1491911889:190445..190684TCONS_00026349-exon-sc0000569-1491911889:190445..190684Clytia hemisphaericaexon
TCONS_00026349-exon-sc0000569-1491911889:189228..189590TCONS_00026349-exon-sc0000569-1491911889:189228..189590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000569supercontigsc0000569:189228..191246 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.857153	0.743393	0.530623	1.05921	0.209748	0.240314	0.601289	0.301644	1.64567	1.98232	5.72091	5.54515	0.273223	0.500599	46.3188	11.3685	0.649586	0.0739782	0.153307	0.291467	0.310191	0.156524	0.549729	0.21166	0	0.266746	0	0.0383437	0.3735	0.0543624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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