|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026395 ID=TCONS_00026395|Name=TCONS_00026395|organism=Clytia hemisphaerica|type=transcript|length=1882bp
GGCTGATGTGATAGTAACCTAAAAAGGGAAAATAGATTACAGTACTTTAC
AAACCGGGTAAACCTTCACGAATcagaatttataaaaaaatcgcgAGGAT
TTTATTTCGTGAATGAGCGTGATTATAGTCAGAAATTACCCTGAATATGC
CTAAGATAGCAAATTTACAGTGTATATTATgctaaaaatattaatttccc
ATAGACTTACTTTTGCGAGACTCATTTACGTGAAAATGATTCAAGAATTT
GCGAAAACGTTAAATTAAATCTCGCAAAAAtgaatccaattaaagtacaa
AATCTAGTCTAGTATATATGAAAATAACTAAGACCTATCTTTAgtcaaca
ttttcaaagtcGCTTTAGTAAGAAAGCCCATCGAATAAGTTGGAACAAGG
CGCGAAAACAATACATATATCTCGTAAGAAGCCGTTTTCAAGGCGTAACA
TTTATGCGTAGTGTAACATTGATACGTCTCTTTCGTTTCGCTTACGTTCG
CTGCGCTCGAATCATCCGTTTCATCatcattgtttattttcaaaaaatta
ttagCGGACAGGTAGAAATCCAGTAACGCGTTTTTCCGGACATCCTTAGA
ACTCATTTCGTCCATGTCAATGGCCGTATTATTACCGTGAGTGTGAAACG
ATATCAAACTTTTTCCTTCTACCGTGTTTAGTAAAATCACGCTTATCACG
TTATGATCAGGTTTTATTTCCGGTGGAAAAGAACGCGGTAACGACCGCAA
GCATTCCCGTAAATACGGTACAAGCGGCAACCAATAATGGACGattagtt
tgttttgaatttcatgTAAAGAAGGTTCAGGGCCACAAACAATCGCAATT
TGTACGTGATCAATTAACGTGACCGTAATTAAACGATGCGGGACGACGGG
ACTTCCGTTCGGTAGATATACCGGCGTATCTGACGCCGTCGCATTACGTA
AATTATATACAACGTAAGACAGGAGTGATGTTTCTATAGTTTGTAATTGC
CAGAATTTCTCCGTAGCAACCACTACACGTCCGTCAACGGTAATACAGCC
GAATTCACTATCTAAATCCTCCGTAAAAGATGTTAAATAATTGATCAAAA
CGCTCGAATTACTGATGTGTAGGGTTTCAGTCGTTTGTGTTAAAGTGGCG
GTAATTTTTGAAGGGGCTAACATGGCATCCAAAAGGGGCGAACAcaattt
catcttctttttaaGGCGTTCCACGTTATTGCTTTTTGTTAATTCAGTTT
CACCGATGCTCATAATCAAACTCTTGTAAAGATTCTCTAAAAGCGTTTCC
AAGAACCGCTCATTGCATTTATTCTCAAAaaccaataaaataaatttgac
aGTTTCATATTCTTTCCAAAACACGACCCCCGTCTCTGTTCGTGTTAGAC
CGCTCTCCACACCCTTGCTTTTAGCGAACATCTGCACTCCATTTAGTGAC
CCGATTACAGGGAAAGGTACAGTGGAGGAGTGCCCGATATTTTTTGAGAA
CAATGGAATACCATTGACTGTAAGACAATGGAGGGAGAATTTAATTAGCG
AATCAGTGGATTTGATTCCTCCTTCTCGTGGTTCATTCGACTTCATTGTG
AAAAATGTAAACCAATTTTCGATTCCCGtctgttttattttaaaaattta
ataattcCATCTAACCTTAAAAACCGAACAAATTATACTTTAAAATTCAT
CCTTAActaagtttgaaatttctcagTGCTCAACCTGCACCAACCTCATT
TTTCTTTGCCGCATTCAAAGTAATTGAATTTTTACTCTTTCTTTTATACC
ACACGTAAAATCTTGAGAGCTGGCAGTATTTCTCGCGCTTTTTTAATTGT
ATTgtctgattttttttattttttattttttg Run BLAST on NCBI protein sequence of fuzzy >TCONS_00026395-protein ID=TCONS_00026395-protein|Name=fuzzy|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
MKSNEPREGGIKSTDSLIKFSLHCLTVNGIPLFSKNIGHSSTVPFPVIGS
LNGVQMFAKSKGVESGLTRTETGVVFWKEYETVKFILLVFENKCNERFLE
TLLENLYKSLIMSIGETELTKSNNVERLKKKMKLCSPLLDAMLAPSKITA
TLTQTTETLHISNSSVLINYLTSFTEDLDSEFGCITVDGRVVVATEKFWQ
LQTIETSLLSYVVYNLRNATASDTPVYLPNGSPVVPHRLITVTLIDHVQI
AIVCGPEPSLHEIQNKLIVHYWLPLVPYLRECLRSLPRSFPPEIKPDHNV
ISVILLNTVEGKSLISFHTHGNNTAIDMDEMSSKDVRKNALLDFYLSANN
FLKINNDDETDDSSAANVSETKETYQCYTTHKCYALKTASYEIYVLFSRL
VPTYSMGFLTKATLKMLTKDRS Run BLAST on NCBI transcript from alignment at sc0000570:47725..49606 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026395 ID=TCONS_00026395|Name=TCONS_00026395|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at sc0000570:47725..49606 (Clytia hemisphaerica)
caaaaaataaaaaataaaaaaaatcagacAATACAATTAAAAAAGCGCGA
GAAATACTGCCAGCTCTCAAGATTTTACGTGTGGTATAAAAGAAAGAGTA
AAAATTCAATTACTTTGAATGCGGCAAAGAAAAATGAGGTTGGTGCAGGT
TGAGCActgagaaatttcaaacttagTTAAGGATGAATTTTAAAGTATAA
TTTGTTCGGTTTTTAAGGTTAGATGgaattattaaatttttaaaataaaa
cagaCGGGAATCGAAAATTGGTTTACATTTTTCACAATGAAGTCGAATGA
ACCACGAGAAGGAGGAATCAAATCCACTGATTCGCTAATTAAATTCTCCC
TCCATTGTCTTACAGTCAATGGTATTCCATTGTTCTCAAAAAATATCGGG
CACTCCTCCACTGTACCTTTCCCTGTAATCGGGTCACTAAATGGAGTGCA
GATGTTCGCTAAAAGCAAGGGTGTGGAGAGCGGTCTAACACGAACAGAGA
CGGGGGTCGTGTTTTGGAAAGAATATGAAACtgtcaaatttattttattg
gttTTTGAGAATAAATGCAATGAGCGGTTCTTGGAAACGCTTTTAGAGAA
TCTTTACAAGAGTTTGATTATGAGCATCGGTGAAACTGAATTAACAAAAA
GCAATAACGTGGAACGCCttaaaaagaagatgaaattgTGTTCGCCCCTT
TTGGATGCCATGTTAGCCCCTTCAAAAATTACCGCCACTTTAACACAAAC
GACTGAAACCCTACACATCAGTAATTCGAGCGTTTTGATCAATTATTTAA
CATCTTTTACGGAGGATTTAGATAGTGAATTCGGCTGTATTACCGTTGAC
GGACGTGTAGTGGTTGCTACGGAGAAATTCTGGCAATTACAAACTATAGA
AACATCACTCCTGTCTTACGTTGTATATAATTTACGTAATGCGACGGCGT
CAGATACGCCGGTATATCTACCGAACGGAAGTCCCGTCGTCCCGCATCGT
TTAATTACGGTCACGTTAATTGATCACGTACAAATTGCGATTGTTTGTGG
CCCTGAACCTTCTTTAcatgaaattcaaaacaaactaatCGTCCATTATT
GGTTGCCGCTTGTACCGTATTTACGGGAATGCTTGCGGTCGTTACCGCGT
TCTTTTCCACCGGAAATAAAACCTGATCATAACGTGATAAGCGTGATTTT
ACTAAACACGGTAGAAGGAAAAAGTTTGATATCGTTTCACACTCACGGTA
ATAATACGGCCATTGACATGGACGAAATGAGTTCTAAGGATGTCCGGAAA
AACGCGTTACTGGATTTCTACCTGTCCGctaataattttttgaaaataaa
caatgatGATGAAACGGATGATTCGAGCGCAGCGAACGTAAGCGAAACGA
AAGAGACGTATCAATGTTACACTACGCATAAATGTTACGCCTTGAAAACG
GCTTCTTACGAGATATATGTATTGTTTTCGCGCCTTGTTCCAACTTATTC
GATGGGCTTTCTTACTAAAGCgactttgaaaatgttgacTAAAGATAGGT
CTTAGTTATTTTCATATATACTAGACTAGATTttgtactttaattggatt
caTTTTTGCGAGATTTAATTTAACGTTTTCGCAAATTCTTGAATCATTTT
CACGTAAATGAGTCTCGCAAAAGTAAGTCTATgggaaattaatattttta
gcATAATATACACTGTAAATTTGCTATCTTAGGCATATTCAGGGTAATTT
CTGACTATAATCACGCTCATTCACGAAATAAAATCCTcgcgattttttta
taaattctgATTCGTGAAGGTTTACCCGGTTTGTAAAGTACTGTAATCTA
TTTTCCCTTTTTAGGTTACTATCACATCAGCC Coding sequence (CDS) from alignment at sc0000570:47725..49606 >TCONS_00026395 ID=TCONS_00026395|Name=TCONS_00026395|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at sc0000570:47725..49606 (Clytia hemisphaerica)
ATGAAGTCGAATGAACCACGAGAAGGAGGAATCAAATCCACTGATTCGCT
AATTAAATTCTCCCTCCATTGTCTTACAGTCAATGGTATTCCATTGTTCT
CAAAAAATATCGGGCACTCCTCCACTGTACCTTTCCCTGTAATCGGGTCA
CTAAATGGAGTGCAGATGTTCGCTAAAAGCAAGGGTGTGGAGAGCGGTCT
AACACGAACAGAGACGGGGGTCGTGTTTTGGAAAGAATATGAAACtgtca
aatttattttattggttTTTGAGAATAAATGCAATGAGCGGTTCTTGGAA
ACGCTTTTAGAGAATCTTTACAAGAGTTTGATTATGAGCATCGGTGAAAC
TGAATTAACAAAAAGCAATAACGTGGAACGCCttaaaaagaagatgaaat
tgTGTTCGCCCCTTTTGGATGCCATGTTAGCCCCTTCAAAAATTACCGCC
ACTTTAACACAAACGACTGAAACCCTACACATCAGTAATTCGAGCGTTTT
GATCAATTATTTAACATCTTTTACGGAGGATTTAGATAGTGAATTCGGCT
GTATTACCGTTGACGGACGTGTAGTGGTTGCTACGGAGAAATTCTGGCAA
TTACAAACTATAGAAACATCACTCCTGTCTTACGTTGTATATAATTTACG
TAATGCGACGGCGTCAGATACGCCGGTATATCTACCGAACGGAAGTCCCG
TCGTCCCGCATCGTTTAATTACGGTCACGTTAATTGATCACGTACAAATT
GCGATTGTTTGTGGCCCTGAACCTTCTTTAcatgaaattcaaaacaaact
aatCGTCCATTATTGGTTGCCGCTTGTACCGTATTTACGGGAATGCTTGC
GGTCGTTACCGCGTTCTTTTCCACCGGAAATAAAACCTGATCATAACGTG
ATAAGCGTGATTTTACTAAACACGGTAGAAGGAAAAAGTTTGATATCGTT
TCACACTCACGGTAATAATACGGCCATTGACATGGACGAAATGAGTTCTA
AGGATGTCCGGAAAAACGCGTTACTGGATTTCTACCTGTCCGctaataat
tttttgaaaataaacaatgatGATGAAACGGATGATTCGAGCGCAGCGAA
CGTAAGCGAAACGAAAGAGACGTATCAATGTTACACTACGCATAAATGTT
ACGCCTTGAAAACGGCTTCTTACGAGATATATGTATTGTTTTCGCGCCTT
GTTCCAACTTATTCGATGGGCTTTCTTACTAAAGCgactttgaaaatgtt
gacTAAAGATAGGTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026395-exon-sc0000570-1491911889:47725..49606 | TCONS_00026395-exon-sc0000570-1491911889:47725..49606 | Clytia hemisphaerica | exon |
| TCONS_00026395-exon-sc0000570-1510915933:47725..49606 | TCONS_00026395-exon-sc0000570-1510915933:47725..49606 | Clytia hemisphaerica | exon |
| TCONS_00026395-exon-sc0000570-1575043694:47725..49606 | TCONS_00026395-exon-sc0000570-1575043694:47725..49606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000570 | supercontig | sc0000570:47725..49606 . |
Blast
BLAST of TCONS_00026395 vs. Swiss-Prot (Human)
Match: FUZZY (Protein fuzzy homolog OS=Homo sapiens GN=FUZ PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.128e-49 Identity = 127/372 (34.14%), Postives = 203/372 (54.57%), Query Frame = -2
Query: 445 LHCLTVN-GIPLFSKNIGHSS----TVPFPVIGSLNGVQMFAKSKGVESGLTRTETGVVFWKEY-ETVKFILLVFENKCNERFLETLLENLYKSLIMSIGETELTKSNNVERLKKKMKLCSPLLDAMLAPSKIXXXXXXXXXTLHISNSSVLINYLTSFTEDLDSEFGCITVDGRVVVATEKFWQLQTIETSLLSYVVYNLRNATASDTPVYLPNGSPVVPHRLITVTLIDHVQIAIVCGPEPSLHEIQNKLIVHYWLPLVPYLRECLRSLPRSFPPEIKPDHNVISVILLNTVEGKSLISFHTHGNNTAIDMDEMSSKDVRKNALLDFY--LSANNF-LKINNDDETDDSSAANVSETKETYQCYTTHKCY 1533
L CL + G+PLF ++ + +PF VIGSLNGV MF ++ V+ RTE V WK + +++ I+L E +E LE LL+ ++ ++++ +G ELT NVERLKK ++ L+D+ L S++ LTQ + + S+L L+ F E + F + V GRVV ATE +W+L T E LL ++V +L TA D PVYLP+GSP VPHRL+T+TL+ +++ ++CGP P L ++ +L+ +W PL+ LR CL PR+ P +++ ++LL+ + L + G D+ S + R+ L +FY +++ +F + ++T+D E YQ CY
Sbjct: 12 LLCLAASSGVPLFCRSSRGGAPARQQLPFSVIGSLNGVHMFGQNLEVQLSSARTENTTVVWKSFHDSITLIVLSSEVGISELRLERLLQMVFGAMVLLVGLEELTNIRNVERLKKDLRASYCLIDSFLGDSELIGDLTQCVDCVIPPEGSLLQEALSGFAEAAGTTFVSLVVSGRVVAATEGWWRLGTPEAVLLPWLVGSLPPQTARDYPVYLPHGSPTVPHRLLTLTLLPSLELCLLCGPSPPLSQLYPQLLERWWQPLLDPLRACLPLGPRALPSGFPLHTDILGLLLLHLELKRCLFTVEPLG-------DKEPSPEQRRRLLRNFYTLVTSTHFPPEPGPPEKTED----------EVYQAQLPRACY 366
The following BLAST results are available for this feature:
|
