|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026397 ID=TCONS_00026397|Name=TCONS_00026397|organism=Clytia hemisphaerica|type=transcript|length=1226bp
gATCATTAAAAGTGAATCTTACCATCTTCATAATAAACACTGTAGTCGAC
ATCCCAATCATCCACTGtatcttcatcaaaatctttCCCTTTCATTTCGT
TCCAAAAATAAGCATCAGTATAAAAGACAAGTCCACTTCCTCCTTTCTCC
CATTTTACTTCTAAATCCTCCTCAAAAAGTCGTTCCTTTGGACGTGATTG
ATTATCAACATCATCATGCAAAGCGTTATATCGATCCCATTCTTCTGTAT
CTCCTCCGTCTTCAGCATCAGATTCTGGTTTTTCTGATTCCGGACAAGAA
TCATTTTCatcactttctttttctttattgtttgcattatttttattagt
gtttttatttttgctggTTCCTTCACCATAGTCCATTTCAACCGAAGAAT
ACTGCTTAGGGCCTTTCTCAAAAGACAACCCAAGACTTTTTATAACACTG
CCTGGTAAAGCACACTTAGCAATCATTGCACGAAAGTGTTTAGTTGGTGT
TCCGACATTTCCATGGGGCATGATATTCAAAGGTGGATCAAATTCAATAA
GACTGGCAAAATCTTCTAAGCGAATATCTTGATTCTCCAAATGTTTGTCA
TTTAGCATTTCTTTTTTACTTAGATACTTTTTAGGTTGAGTGGAATCAAC
ATTAATCTCTAAGATAATGCATAGTGTTTTATCTGAATATAGTCTTTCTG
CACCATACCATCGCCTCTTGTGATATTTTTGTTGGAATTTCTTCACAAAG
GTATTCCTTATTTTTATAATACAGCAACAAGtgcttttttcttctttgtc
tttATGTCCTTCATTATTAATTTCAGAGGCTTGCTTGACTTTAGTTGATT
CAGGTCTATGTCGATAATGAAAGCAATCAAATGCCCCTTTCTCAATAAAT
TCAGAGAAAAAGGTTCGAAGATCTGCTGATCGATAATGCTTTGGTATGTT
TCCAATGAATAGAACTTTAGTTTTTTCAGTATTCTTACAATTTTCCTCTT
CAACAGAAATCCTAGAATCAGTGTCTGTAGCTCCAGTTCTAGTTGCAGTC
GGTGTTGGGTTTTCAGcaagtttttcatttgtagAAACATTAACATCAAG
TGCAAGATTCTTAACCAAAAACCCTTTACCATCTTCTACACCAAACTTGA
TTGATTTTAGAGACATTATAATTctataaaacaataaaacaacaTAACCT
CAATAACCTTTGGAATGTAGGtatga Run BLAST on NCBI protein sequence of TCONS_00026397-protein >TCONS_00026397-protein ID=TCONS_00026397-protein|Name=TCONS_00026397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MSLKSIKFGVEDGKGFLVKNLALDVNVSTNEKLAENPTPTATRTGATDTD
SRISVEEENCKNTEKTKVLFIGNIPKHYRSADLRTFFSEFIEKGAFDCFH
YRHRPESTKVKQASEINNEGHKDKEEKSTCCCIIKIRNTFVKKFQQKYHK
RRWYGAERLYSDKTLCIILEINVDSTQPKKYLSKKEMLNDKHLENQDIRL
EDFASLIEFDPPLNIMPHGNVGTPTKHFRAMIAKCALPGSVIKSLGLSFE
KGPKQYSSVEMDYGEGTSKNKNTNKNNANNKEKESDENDSCPESEKPESD
AEDGGDTEEWDRYNALHDDVDNQSRPKERLFEEDLEVKWEKGGSGLVFYT
DAYFWNEMKGKDFDEDTVDDWDVDYSVYYEDGKIHF Run BLAST on NCBI transcript from alignment at sc0000570:90408..91633 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026397 ID=TCONS_00026397|Name=TCONS_00026397|organism=Clytia hemisphaerica|type=transcript|length=1226bp|location=Sequence derived from alignment at sc0000570:90408..91633 (Clytia hemisphaerica)
tcataCCTACATTCCAAAGGTTATTGAGGTTAtgttgttttattgtttta
tagAATTATAATGTCTCTAAAATCAATCAAGTTTGGTGTAGAAGATGGTA
AAGGGTTTTTGGTTAAGAATCTTGCACTTGATGTTAATGTTTctacaaat
gaaaaacttgCTGAAAACCCAACACCGACTGCAACTAGAACTGGAGCTAC
AGACACTGATTCTAGGATTTCTGTTGAAGAGGAAAATTGTAAGAATACTG
AAAAAACTAAAGTTCTATTCATTGGAAACATACCAAAGCATTATCGATCA
GCAGATCTTCGAACCTTTTTCTCTGAATTTATTGAGAAAGGGGCATTTGA
TTGCTTTCATTATCGACATAGACCTGAATCAACTAAAGTCAAGCAAGCCT
CTGAAATTAATAATGAAGGACATaaagacaaagaagaaaaaagcaCTTGT
TGCTGTATTATAAAAATAAGGAATACCTTTGTGAAGAAATTCCAACAAAA
ATATCACAAGAGGCGATGGTATGGTGCAGAAAGACTATATTCAGATAAAA
CACTATGCATTATCTTAGAGATTAATGTTGATTCCACTCAACCTAAAAAG
TATCTAAGTAAAAAAGAAATGCTAAATGACAAACATTTGGAGAATCAAGA
TATTCGCTTAGAAGATTTTGCCAGTCTTATTGAATTTGATCCACCTTTGA
ATATCATGCCCCATGGAAATGTCGGAACACCAACTAAACACTTTCGTGCA
ATGATTGCTAAGTGTGCTTTACCAGGCAGTGTTATAAAAAGTCTTGGGTT
GTCTTTTGAGAAAGGCCCTAAGCAGTATTCTTCGGTTGAAATGGACTATG
GTGAAGGAAccagcaaaaataaaaacactaataaaaataatgcaaacaat
aaagaaaaagaaagtgatGAAAATGATTCTTGTCCGGAATCAGAAAAACC
AGAATCTGATGCTGAAGACGGAGGAGATACAGAAGAATGGGATCGATATA
ACGCTTTGCATGATGATGTTGATAATCAATCACGTCCAAAGGAACGACTT
TTTGAGGAGGATTTAGAAGTAAAATGGGAGAAAGGAGGAAGTGGACTTGT
CTTTTATACTGATGCTTATTTTTGGAACGAAATGAAAGGGaaagattttg
atgaagataCAGTGGATGATTGGGATGTCGACTACAGTGTTTATTATGAA
GATGGTAAGATTCACTTTTAATGATc Coding sequence (CDS) from alignment at sc0000570:90408..91633 >TCONS_00026397 ID=TCONS_00026397|Name=TCONS_00026397|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at sc0000570:90408..91633 (Clytia hemisphaerica)
ATGTCTCTAAAATCAATCAAGTTTGGTGTAGAAGATGGTAAAGGGTTTTT
GGTTAAGAATCTTGCACTTGATGTTAATGTTTctacaaatgaaaaacttg
CTGAAAACCCAACACCGACTGCAACTAGAACTGGAGCTACAGACACTGAT
TCTAGGATTTCTGTTGAAGAGGAAAATTGTAAGAATACTGAAAAAACTAA
AGTTCTATTCATTGGAAACATACCAAAGCATTATCGATCAGCAGATCTTC
GAACCTTTTTCTCTGAATTTATTGAGAAAGGGGCATTTGATTGCTTTCAT
TATCGACATAGACCTGAATCAACTAAAGTCAAGCAAGCCTCTGAAATTAA
TAATGAAGGACATaaagacaaagaagaaaaaagcaCTTGTTGCTGTATTA
TAAAAATAAGGAATACCTTTGTGAAGAAATTCCAACAAAAATATCACAAG
AGGCGATGGTATGGTGCAGAAAGACTATATTCAGATAAAACACTATGCAT
TATCTTAGAGATTAATGTTGATTCCACTCAACCTAAAAAGTATCTAAGTA
AAAAAGAAATGCTAAATGACAAACATTTGGAGAATCAAGATATTCGCTTA
GAAGATTTTGCCAGTCTTATTGAATTTGATCCACCTTTGAATATCATGCC
CCATGGAAATGTCGGAACACCAACTAAACACTTTCGTGCAATGATTGCTA
AGTGTGCTTTACCAGGCAGTGTTATAAAAAGTCTTGGGTTGTCTTTTGAG
AAAGGCCCTAAGCAGTATTCTTCGGTTGAAATGGACTATGGTGAAGGAAc
cagcaaaaataaaaacactaataaaaataatgcaaacaataaagaaaaag
aaagtgatGAAAATGATTCTTGTCCGGAATCAGAAAAACCAGAATCTGAT
GCTGAAGACGGAGGAGATACAGAAGAATGGGATCGATATAACGCTTTGCA
TGATGATGTTGATAATCAATCACGTCCAAAGGAACGACTTTTTGAGGAGG
ATTTAGAAGTAAAATGGGAGAAAGGAGGAAGTGGACTTGTCTTTTATACT
GATGCTTATTTTTGGAACGAAATGAAAGGGaaagattttgatgaagataC
AGTGGATGATTGGGATGTCGACTACAGTGTTTATTATGAAGATGGTAAGA
TTCACTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026397-exon-sc0000570-1491911889:90408..91633 | TCONS_00026397-exon-sc0000570-1491911889:90408..91633 | Clytia hemisphaerica | exon |
| TCONS_00026397-exon-sc0000570-1510915933:90408..91633 | TCONS_00026397-exon-sc0000570-1510915933:90408..91633 | Clytia hemisphaerica | exon |
| TCONS_00026397-exon-sc0000570-1575043694:90408..91633 | TCONS_00026397-exon-sc0000570-1575043694:90408..91633 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000570 | supercontig | sc0000570:90408..91633 . |
Blast
BLAST of TCONS_00026397 vs. Swiss-Prot (Human)
Match: GPTC3 (G patch domain-containing protein 3 OS=Homo sapiens GN=GPATCH3 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 9.396e-44 Identity = 113/339 (33.33%), Postives = 163/339 (48.08%), Query Frame = -1
Query: 87 LFIGNIPKHYRSADLRTFFSEFIEK--GAFDCFHYRHRPESTKVK----------------------QASEINNEGHKDKE--EKSTCCCIIKIRNTF-VKKFQQKYHKRRWYGAERLYSDKTLCIILEINVDSTQPK----KYLSKKEMLNDKHLENQDIRLEDFASLIEFDPPLNIMPHGNVGTPTKHFRAMIAKCALPGSVIKSLGLSFEK--GPKQYSSVEMDY--------------GEGXXXXXXXXXXXXXXXXXXXXXXXSCPESEKPESDAEDGGDTEEWDRYNALHDDVDNQSRPKERLFEEDLEVKWEKGGSGLVFYTDAYFWNEMKG 962
L + IP RSA LR++FS+F E+ G F CFHYRHRPE + A+++ +D + TCCC+I +R ++ + Y RRW + + C+I + + + + ++KE+ + K EN+ L D L E +PP+ +MP GNVGTP + F +I C LP +I L L F K ++Y +V +Y EG + T + E + E E+ ED EEW+R+ ALH+DV Q R E+LFEE++E+KWEKGGSGLVFYTDA FW E +G
Sbjct: 15 LVVSGIPSVLRSAHLRSYFSQFREERGGGFLCFHYRHRPERAPPQAAPNSALIPTDPAAEGQLLSQTSATDVRPLSTRDSTPIQTRTCCCVISVRGLAQAQRLIRMYSGRRWLDSHGTWLPGR-CLIRRLRLPTEASGLGSFPFKTRKELQSWKA-ENEAFTLADLKQLPELNPPV-LMPRGNVGTPLRVFLELIRACRLPPRIITQLQLQFPKTGSSRRYGNVPFEYEDSETVEQEELVYTAEGEEIPQGTYLADIPASPCGEPEEEVGKEEEEESHSDEDDDRGEEWERHEALHEDVTGQERTTEQLFEEEIELKWEKGGSGLVFYTDAQFWQEEEG 350
The following BLAST results are available for this feature:
|
