|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026413 ID=TCONS_00026413|Name=TCONS_00026413|organism=Clytia hemisphaerica|type=transcript|length=749bp
CGAGTGGTACAAAATCGTGTCAAAACAACATACAGTATTTTGAATGGCGA
GTTTATTGAATAAACAAGATATtgaattgatgttttaaaacaaCCAATAG
AATCGCTTATGGTGTTTCACTGgatatatttttagaaaagggCTTTAAAT
GAAAGATCGATATCAATTTTTCTTAAACACACCTTTGATGGTACAGCAAG
TTGATGAAATTCTGAAAGAAAAGTCACATCAATTGGATTTTTTAATTGAA
TTTCAAGATGCATTTCAAACTAATTGCTGTAATGTTGACTTTCATGGCAG
TCGCTTCTATTTCTTCTTTTGGTTTATACCCTGCTACTCGTACtgTGTGC
CAAATAGTTTGCGTGGAATTTCAAGATTGTTTTACAAAACATGGTTACGG
AAAATGCAACCCAATTATTGGAAATTGTAATTGCTTGCTAAGATTCGATC
AAATATGGGATAATTGACAAAATGCTCTCTAATTGATTTACACGGGACAG
ACAATTTGGCTATTATATAATGGAAAAtaattctttgttcttttttcatt
aaattatacattatcattattattgttgttatCATTCCAGAATATTGTAA
ACATTTCTCTTAAAATATGTAATAAAGATAGATTCGTAGGGGAAAAAAAG
TTCTTTCGATTTATTTTGGAAATCTTGATTCAAAGTGAACGTAGTGAACC
CATTCCAAGTGTaagctgcagcgaaatacaacaacgtactttaatcgga Run BLAST on NCBI transcript from alignment at sc0000571:59182..62397+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026413 ID=TCONS_00026413|Name=TCONS_00026413|organism=Clytia hemisphaerica|type=transcript|length=3216bp|location=Sequence derived from alignment at sc0000571:59182..62397+ (Clytia hemisphaerica)
CGAGTGGTACAAAATCGTGTCAAAACAACATACAGTATTTTGAATGGCGA
GTTTATTGAATAAACAAGATATtgaattgatgttttaaaacaaCCAATAG
AATCGCTTATGGTGTTTCACTGgatatatttttagaaaagggCTTTAAAT
GAAAGATCGATATCAATTTTTCTTAAACACACCTTTGATGGTACAGCAAG
TTGATGAAATTCTGAAAGAAAAGTCACATCAATTGGATTTTTTAATTGTa
tgatttttcacatttttttattttcttttttgatttataatcaatatttt
tattttctcatcttaagatgttttttctttaaaactttataaTTTAAAAG
ATATGCAATCCATaaaatgtgtaaccgtacatcctgtgcccaagttcagg
agttgccataaagccattatggtaataaccgggagggcacattgctatag
attgtaatttaaaagataataaaataaattttattcgaAAATATTATGGT
ATTATGTAacgttttctttttatctttacaGGAATTTCAAGATGCATTTC
AAACTAATTGCTGTAATGTTGACTTTCATGGCAGTCGCTTCTATTTCTTC
TTTTGGTTTATACCCTGCTACTCGTACtggtatgttttttttataagaac
acccaaaatttttgaagatgttcttaacttttttagttttaagcttaaaa
atgttcttaacatgttcttttgaacattttgggaatatttttgccatttt
cgtaAGAATTAgccacccctgtctcacagccccggtgaaacttttttcct
cagtggggataaggattcctattgaaatcccaatggagatagaaatttta
ttgttccaaggttaaaatatccggtggggatggttttagagtacaatttt
taaacatagaatttcgaatggggatgaaatcaaaatcaatttcccagtgg
ggctggggtcccaggtctgtgacacaggggtgtaaataGGGTGCTGTTGA
GTCCacacaaagtcttaaaatgttcttaacttgctcttaacactTTGGCc
atttattgttccaaggttaaaatatccggtggggatggttttagagtaca
attttcaaacatagaatttcgaatggggatgaaatcaaaatcaatttctc
agtgaaaacttgctcttaacactccttatatagtttattcttataaaaaa
acgtgtatgggaCTCCCAGGTAGATAAGATACTTTCAAAGATAAATTCAA
ACAAGGTgattaaaaatcaacaaaattagtTACCAGAATCTTTAACAATC
ATCTGACAAGCCCATTTTTGTAACTTGAtacttttcccaaatctctggcc
AGAGTCTATCTATTTTAGGTATAGCcctatttcttttttatgatttttgt
tggcggtaaaaatcataaaaaaggaaTAAGTGTATACCTAAACTAGAGTC
TATCGAAATATAGTCTGTAAATTCTCTGTTATATCACCCCTATCCCTATC
TCTTTACCCTCGGGAAGGGGTACCAGGTTTGCGAGGTGTCGGGTATGCCC
GAGCAAAAGTTCGAAGATCGACCTTTAGGAGAGactgaatttcaaaaatg
ttgtccattttttgacttttttgccatccttagagagaccatttccccaa
aaattcagcctaaattttcaaattttagtcaaaattttaagaGTTTATGA
CTCTTTGAGGGAGTCTATTTTTGATCTGCGTTATTTGGAAAACTTACTGA
GACttgctttttaatgaatttgaggaattttcgagggtgtgaaaaagagA
ACCTATGGCTCAAACATACCCGGcgcccattttgcctaagtacgaACATC
CCTCCCCCCCCGGAAGACCCCAATAGGTAAATGAAGAGTTatgtttacac
gtttttttttataaggaacacgtttataagaaacttgaggctgaaaatga
tctgagaaataaggaattgttaaggaactgcccaGACTGAGAATAAAAAA
TCAGTTAAGGAACAGCAAGAGTTCAATTTGAACTCTTGCACACATTTACA
ACAACCTTTATAAAAAGACGGAAAATATTGCTGAAACGCCTTTCAATAtg
tcaaaaagacaaaaaatgctGATAAAGAAACTAAACACTTAGCAAATCTA
AACTTAACAGCTAAGTAACTAAGTAACTAAGGATAAGGAATTTTGAAGCT
GAAACTATCTGGCAAAATAAGAACTCCAGGctcggagccaagttaaggtt
ccttataaaaaaaacgtgtatgctcattgaattttataaaaatgatacga
tttgttttaaataaaaaatatacaaagttAAATATAAAACAAATACAAGA
GCAAGGCTAAATAAGATTAAAAAAACAtccttacacgcttttttttataa
gaatacactttataagaatgtccatgatgaaaatggccaaaaattaagaa
cactaCTAAGAATATCACTTATTTTTATACTTATATTTtgctcaagctaa
gaatgccatttttaaagcattttcaattaCAAGTTGTCAATTACCCCAGA
GTAAGGCTcacttctttcacaaaaaaatgccattttatgtttgagacgta
tgtactggCCCcctgtactaaatgttaaatctagtatgaattaggatcct
aacctaaaaatgctgtaggaatattttagaatgattttccccaaaaaagt
taagaatattcatgatgaaatggatttacaccattcttataaaaaaacaa
aagattcttAATTCATCGATTATAAAATTTGGATATGATTGAATTTCTAA
TTTATTGTATAGTGTGCCAAATAGTTTGCGTGGAATTTCAAGATTGTTTT
ACAAAACATGGTTACGGAAAATGCAACCCAATTATTGGAAATTGTAATTG
CTTGCTAAGATTCGATCAAATATGGGATAATTGACAAAATGCTCTCTAAT
TGATTTACACGGGACAGACAATTTGGCTATTATATAATGGAAAAtaattc
tttgttcttttttcattaaattatacattatcattattattgttgttatC
ATTCCAGAATATTGTAAACATTTCTCTTAAAATATGTAATAAAGATAGAT
TCGTAGGGGAAAAAAAGTTCTTTCGATTTATTTTGGAAATCTTGATTCAA
AGTGAACGTAGTGAACCCATTCCAAGTGTaagctgcagcgaaatacaaca
acgtactttaatcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026413-exon-sc0000571-1491911889:59182..59428 | TCONS_00026413-exon-sc0000571-1491911889:59182..59428 | Clytia hemisphaerica | exon |
| TCONS_00026413-exon-sc0000571-1510915933:59182..59428 | TCONS_00026413-exon-sc0000571-1510915933:59182..59428 | Clytia hemisphaerica | exon |
| TCONS_00026413-exon-sc0000571-1575043694:59182..59428 | TCONS_00026413-exon-sc0000571-1575043694:59182..59428 | Clytia hemisphaerica | exon |
| TCONS_00026413-exon-sc0000571-1491911889:59713..59810 | TCONS_00026413-exon-sc0000571-1491911889:59713..59810 | Clytia hemisphaerica | exon |
| TCONS_00026413-exon-sc0000571-1510915933:59713..59810 | TCONS_00026413-exon-sc0000571-1510915933:59713..59810 | Clytia hemisphaerica | exon |
| TCONS_00026413-exon-sc0000571-1575043694:59713..59810 | TCONS_00026413-exon-sc0000571-1575043694:59713..59810 | Clytia hemisphaerica | exon |
| TCONS_00026413-exon-sc0000571-1491911889:61994..62397 | TCONS_00026413-exon-sc0000571-1491911889:61994..62397 | Clytia hemisphaerica | exon |
| TCONS_00026413-exon-sc0000571-1510915933:61994..62397 | TCONS_00026413-exon-sc0000571-1510915933:61994..62397 | Clytia hemisphaerica | exon |
| TCONS_00026413-exon-sc0000571-1575043694:61994..62397 | TCONS_00026413-exon-sc0000571-1575043694:61994..62397 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000571 | supercontig | sc0000571:59182..62397 + |
Blast
The following BLAST results are available for this feature:
|
