TCONS_00026417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026417
Unique NameTCONS_00026417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026417 ID=TCONS_00026417|Name=TCONS_00026417|organism=Clytia hemisphaerica|type=transcript|length=1462bp
TAGTTTGCCTTTGATTTTTCTTATTGGTCTCATGATGAGTTTGAAGCTGA
CGATGCTGGAGTTTTGCGTGGCACTTCTGATAAATATGCTGATCAACGTA
CTGTATTCAATGACTTGGGCCAAGGTGTCTTGGATAATGCTGTAAAAGGT
TTCAATTGCTCATTGTTTGCTTATGGTCAGACAGGAGCAGGAAAAAGTTA
TTCTATGGTCGGTTATGGTCCAAACAAAGGTATCGTCCCAATCACTTGTG
ATGAATTGTTCAAATTGATTGAGGGCAGTACAACAGAAACaAAATATCAA
GTCACATTTTCTATGTTGGAAATTTACAATGAACAAGTCCGTGATTTATT
GACTAAAGATAATCCTAAAGGTGGTCTACCTGTCCGTCAAAATCCCAAAA
TTGGTGCTTTTTATGTGCAAGGTTTAAAGTTTGTTGCTGTAGGatcttat
aaagaaatcgaAGCCAGGACAGAAGAAGGAACTGCTAACAGAACGGTTGC
TTCAACACAGATGAATGCTACTAGTTCACGTGCACATACTGTTGTCACCA
TTCAGTTTGACCAGATTGAAAAGAATGCTGCTGGAGAAGAGACCAAGAAA
AGCTCTGTCGTCAATTTGGTCGATTTAGCTGGATCTGAGCGTGCTGGTTC
TACTGGTGCAACAGGTGATCGTCTTAAAGAAGGTGCCAACATCAATCGTT
CGCTATCATCTCTTGGTAATGTCATCTCAGCTCTGGCTGATCTCTCTATG
GGAAAGAAGAAAGTCCTTGTTCCTTATCGTGATTCCGTTTTGACCAAGTT
GTTACAAAATGCTTTGGGTGGAAACAGTAAAACTATTATGATTGCTGCTT
TATCACCAGCTGATATCAATTACGACGAAACTCTGGGTACACTTAGgTAT
GCTGATCGTGCGAAGAAGATTAAAAATAAAGCCGTTGTGAATGAAAATCC
AATGGACAAATTGATTCGTGAACTAAAAGAAGAGAATGAGAAGTTAAAGA
AATTAATGGCAGGCGGTGATATGAGTGCATTACTGGCGGCCGATCCAGCT
GAAGGTGGTGGCGGAGGCGGAGGAGCTGCTGGTGGTGCTGTAATGACCGA
AGAAGGTAACTGATATGTTGATTATCCCATAAACGAAGTGTCTTGTTTTA
ATGACAGTTGATCCGCCATATTGTTTTCTCGTTTAGATTTTATAGCTATA
GTTTTCGAATGTTCAcatttaagaattttatggaAGTCTTAAATCATTTG
CAGAGTTTAGTTATAAATAAACGAAATGCGCTCGCGGGATTTTTAGGTAT
AATATCTGTGGGTAAGCTGCCAGAGATCTTTAATTTTAAAGTTCGTATAG
CACACATATGAAGTACTTTATTAATCAAATTAATTCTCGTGAGATTAAAT
CCTGAATATTACTTTACCATTACTTTAGCTGGCGATTAAGTTAATTCTCG
TAAAATTACGTC
Run BLAST on NCBI

protein sequence of TCONS_00026417-protein

>TCONS_00026417-protein ID=TCONS_00026417-protein|Name=TCONS_00026417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MVGYGPNKGIVPITCDELFKLIEGSTTETKYQVTFSMLEIYNEQVRDLLT
KDNPKGGLPVRQNPKIGAFYVQGLKFVAVGSYKEIEARTEEGTANRTVAS
TQMNATSSRAHTVVTIQFDQIEKNAAGEETKKSSVVNLVDLAGSERAGST
GATGDRLKEGANINRSLSSLGNVISALADLSMGKKKVLVPYRDSVLTKLL
QNALGGNSKTIMIAALSPADINYDETLGTLRYADRAKKIKNKAVVNENPM
DKLIRELKEENEKLKKLMAGGDMSALLAADPAEGGGGGGGAAGGAVMTEE
GN
Run BLAST on NCBI

transcript from alignment at sc0000571:165282..170004+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026417 ID=TCONS_00026417|Name=TCONS_00026417|organism=Clytia hemisphaerica|type=transcript|length=4723bp|location=Sequence derived from alignment at sc0000571:165282..170004+ (Clytia hemisphaerica)
TAGTTTGCCTTTGATTTTTCTTATTGGTAAGAATTTAGTTTTGTTTCTCA
CTtcataaacattttaaaataagATTTAAAAATCATGCTTTCCACACAGA
ATAGAAGCtatcaataaaatattttcactgCAAATATTCAGCCATGTAGC
TTAATATAAAGTTTCTATAGGCTGTTTTATTAATATTGTTCTATGTGTTA
TGTATGTTTCCACAAAAACAGTTTCTACAAAAAAATCTTATATTCTTTCT
ATAGGTCTCATGATGAGTTTGAAGCTGACGATGCTGGAGTTTTGCGTGGC
ACTTCTGATAAATATGCTGATCAACGTACTGTATTCAATGACTTGGGCCA
AGGTGTCTTGGATAATGCTGTAAAAGGTATATATTACGAGAATTTCTATG
GTTCATTGACTATGAACAGTGTTGTGATTTTCTATTTCAGACAGATTTTG
TACTTTTATAAAATGCATTTTTAAAATACATTTCTAATAATAAAAATGAT
ACGTTTTCAATTTCAGTATTTGTTAAACTAATTTTGCCTGTCATGTGGTA
TAAGTTCACTAGTCAAAAGTCTAACACTGAAGAAATACATCAATCATCTT
TTATTACCAGGTTTCAATTGCTCATTGTTTGCTTATGGTCAGACAGGAGC
AGGAAAAAGTTATTCTATGGTCGGTTATGGTCCAAACAAGTAAGATTCat
attaaattattattaaaaaacatGAACTAGTGATAGTATTTAACATAATA
CCTATGCTTCATAAGGATGCAATGtttaaatattttattcttgaatttat
agaaaaataaacactgTATAGCTGAGTGCTACAATCAATTATGTGATACA
TTCGGATTAATAATctataatgtttattttttgttttacagAGGTATCGT
CCCAATCACTTGTGATGAATTGTTCAAATTGATTGAGGGCAGTACAACAG
AAACagtaaatcaagttttttttgttcttgcttctttttctttgcatCTT
TTTAAGTTCTGGtagatttttgtttgttttattctgTTATGTCCGTAAAA
GTTGAAATGGAGTTTGATACAAATAAATCTGAAATAAAATTGTTTCTAAT
ATGAGTGGACATTACAAAAATTGTCCATCTTCCAAAGCAGTTTGATTGTT
GTCTTATTAATGAAAAGGAGTCATGAAGAGTTAAAtcgtaaaaaaaataa
taatttggattttgctttattcatgatatgcatcattgcaatgtcttctt
tggACCTTACAGTtcattggttgcaagtgacgtattgactaaTTTTACAT
CATTTGTAAACAATCAGCTGCtaggtccgtgatgtaatgtcagaagacat
tgcaatggtgcgtATGATGAATATCGcatttcattccattttttAGTGTG
ATTGCTTATCAATGCTTGCAgaagaatgaaaataaatactacTGACATGG
AAAAAAATGTTAGATTTTCATTCTGCTATACAAAGCTAGTCAACAACTTG
TCatgatatattttattttgcatTTAGAAATATCAAGTCACATTTTCTAT
GTTGGAAATTTACAATGAACAAGTCCGTGATTTATTGACTAAAGATAATC
CTAAAGGTGGTCTACCTGTAAGTTTTTATATTAGATTTATATtagaatta
attaatttttatatattttttatacatATTTTGAGAATAAATAGTCTGTA
AAATTGCTTTCATGTATTGTAACCACGTGAATATTTGCCTAGTTCAGAAA
TGAACggagaaactttttttcctattttacTTAATAAAGTTTCCTGCTCT
TTCAAGCATTCGTCAGttagtttttttaatattaGCTTAGATATATATGA
AATATCTGAAATTATTTCTGCTACTTTAGCAATCTCATCCAAAAATTCAA
GGATCTTAAGTTTTTTCTTTGGGTAAAATTATCTATTAAATTACAAATTA
TTCGAAATCCTATTTTTTTAGGTCCGTCAAAATCCCAAAATTGGTGCTTT
TTATGTGCAAGGTTTAAAGTTTGTTGCTGTAGGatcttataaagaaatcg
aAGCCAGGACAGAAGAAGGTAAACACACATTATTTAAAACTTCTGATTAT
CAGCGTAATCCTTGTGTACTGTCACAAACCTTGTGAGGTTCTCTCCCTGT
TGAATTCTGTTGAAAAGTCTTTTCTGTTGGAAAATTTTAAGACTACACTA
TTAGAATCACACATTTCATTTTTGAGTCATAAACAAAATAATCTTCACTA
GGCTACGTCCTATCTTCCtttgtttcgagcgtaaaactcctactcctact
cactgctcttgttttgaatattgaaattctccggatacatcgcatgcgca
ctgaggttttaataaaacaatagagagtttcgaaacctaagccaatcaNg
cgcactgaggttttaataaaacaatagagagtttcgaaatctaagccaat
cagctgggttttaaatattcttttatttgaaatctctattgataaaaatc
ttttgtgaaagttgtctattatgtttaaacctatttataagcaattcccg
gtgggggggGGCTACAAGCGGCCgtctatagcagtgcctatagaccaaga
gtaaggcctaaatgCCTGGAGccgtctattgtgtagactatatCTTCAAC
CGTTAAGGAAAGTTTAAGTAAAAACTAACCTTTGCTTTGGTTTCtgtttg
tttaatttttggggACATTTTGACCACCCTTTCGGGACCTATTCTTGTTT
TCTTAGGACAAATTTTGTCTTTTCGGGGCCAAGTCCTTTTAAACATTTAT
AAACGATGCTTCTTTATGAATTGAGAATATCATTCATTGCCCTAAACTTG
AAACTACGTTAGCTACAATTTTTTAGGACCTCACTGGATGATTGAACTTT
CAAAATAGAGAAAATTTACTGAtttaaagaaaatgttcaagttCTATAGA
TTTTAACATTAAATAATATCTTTTCACCAATCATAGGAACTGCTAACAGA
ACGGTTGCTTCAACACAGATGAATGCTACTAGTTCACGTGCACATACTGT
TGTCACCATTCAGTTTGACCAGATTGAAAAGAATGCTGCTGGAGAAGAGA
CCAAGAAAAGCTCTGTCGTCAATTTGGTCGATTTAGCTGGTAAGAATGTC
TACTAGTTGGTCGGGTCAGTTGTTATCTATTCTCATCAATGGTCTGttct
tttaattttaaattgacAGCAATATTTTGACAGTTTctttagtaaatttg
ggaagTATCTAGGAGTAATATAATGATGGAAGTTCAAATAAGCAAGTTTG
TCCATTTCCTGAAAGTAGCCAGATTAAGAATTTGACCCGGTTCAGAATTA
CAGCATAGCACCTGAGTATGCTGGTTCCACTAATACAACTAGTGTTCATC
CAAAAGCTAATTTCTTATTACTTTCCTCCCTCTCAAAGGATCTGAGCGTG
CTGGTTCTACTGGTGCAACAGGTGATCGTCTTAAAGAAGGTGCCAACATC
AATCGTTCGCTATCATCTCTTGGTAATGTCATCTCAGCTCTGGCTGATCT
CTCTATGGGAAAGAAGAAAGTCCTTGTTCCTTATCGTGATTCCGTTTTGA
CCAAGTTGTTACAAAATGCTTTGGGTGGAAACAGTAAAACTATTATGATT
GCTGCTTTATCACCAGCTGATATCAATTACGACGAAACTCTGGGTACACT
TAGGTAAGTAAATGCATGTGACACTATTAGTAAGTAGGTAAATTNTGATG
AAACCCTGGGTACACTTAGGTAAGTAAATGCATGTGACACTATTAGTAAG
TAGGTAAATTGATAATACACTGCAAACGAGGTTGGCTATTGATGTAGATC
TTGCACCTGTAGAACTTCCTGAAATTTTATACTTTTACTTTATACAAATT
GGTCATCTAACATACTAGCACACTATATATTATGAAAATGACTTCAAATA
GTTGACTAacttagacggccgactttctgtcCTGTTTGTTTGGTAGTtaa
aatttttgcttgaaaaatattgaaagaagGCATTGTTAGAGTAGATAGAA
AGTTGGCAGAAAGTTGGCAATTAAAATCTTTGCATTGACGTTAAGATAAA
TGCATTGACTTTGGAAGGCCAAAAGTATGTTTCTAcaccttttttgattt
tctaaaggTATGCTGATCGTGCGAAGAAGATTAAAAATAAAGCCGTTGTG
AATGAAAATCCAATGGACAAATTGATTCGTGAACTAAAAGAAGAGAATGA
GAAGTTAAAGAAATTAATGGCAGGCGGTGATATGAGTGCATTACTGGCGG
CCGATCCAGCTGAAGGTGGTGGCGGAGGCGGAGGAGCTGCTGGTGGTGCT
GTAATGACCGAAGAAGGTAACTGATATGTTGATTATCCCATAAACGAAGT
GTCTTGTTTTAATGACAGTTGATCCGCCATATTGTTTTCTCGTTTAGATT
TTATAGCTATAGTTTTCGAATGTTCAcatttaagaattttatggaAGTCT
TAAATCATTTGCAGAGTTTAGTTATAAATAAACGAAATGCGCTCGCGGGA
TTTTTAGGTATAATATCTGTGGGTAAGCTGCCAGAGATCTTTAATTTTAA
AGTTCGTATAGCACACATATGAAGTACTTTATTAATCAAATTAATTCTCG
TGAGATTAAATCCTGAATATTACTTTACCATTACTTTAGCTGGCGATTAA
GTTAATTCTCGTAAAATTACGTC

Coding sequence (CDS) from alignment at sc0000571:165282..170004+

>TCONS_00026417 ID=TCONS_00026417|Name=TCONS_00026417|organism=Clytia hemisphaerica|type=CDS|length=6363bp|location=Sequence derived from alignment at sc0000571:165282..170004+ (Clytia hemisphaerica)
ATGGTCGGTTATGGTCCAAACAAAGGTATCGTCCCAATCACTTGTGATGA
ATTGTTCAAATTGATTGAGGGCAGTACAACAGAAACaAAATATCAAGTCA
CATTTTCTATGTTGGAAATTTACAATGAACAAGTCCGTGATTTATTGACT
AAAGATAATCCTAAAGGTGGTCTACCTGTCCGTCAAAATCCCAAAATTGG
TGCTTTTTATGTGCAAGGTTTAAAGTTTGTTGCTGTAGGatcttataaag
aaatcgaAGCCAGGACAGAAGAAGGAACTGCTAACAGAACGGTTGCTTCA
ACACAGATGAATGCTACTAGTTCACGTGCACATACTGTTGTCACCATTCA
GTTTGACCAGATTGAAAAGAATGCTGCTGGAGAAGAGACCAAGAAAAGCT
CTGTCGTCAATTTGGTCGATTTAGCTGGATCTGAGCGTGCTGGTTCTACT
GGTGCAACAGGTGATCGTCTTAAAGAAGGTGCCAACATCAATCGTTCGCT
ATCATCTCTTGGTAATGTCATCTCAGCTCTGGCTGATCTCTCTATGGGAA
AGAAGAAAGTCCTTGTTCCTTATCGTGATTCCGTTTTGACCAAGTTGTTA
CAAAATGCTTTGGGTGGAAACAGTAAAACTATTATGATTGCTGCTTTATC
ACCAGCTGATATCAATTACGACGAAACTCTGGGTACACTTAGgTATGCTG
ATCGTGCGAAGAAGATTAAAAATAAAGCCGTTGTGAATGAAAATCCAATG
GACAAATTGATTCGTGAACTAAAAGAAGAGAATGAGAAGTTAAAGAAATT
AATGGCAGGCGGTGATATGAGTGCATTACTGGCGGCCGATCCAGCTGAAG
GTGGTGGCGGAGGCGGAGGAGCTGCTGGTGGTGCTGTAATGACCGAAGAA
GGTAACTGAATGGTCGGTTATGGTCCAAACAAAGGTATCGTCCCAATCAC
TTGTGATGAATTGTTCAAATTGATTGAGGGCAGTACAACAGAAACaAAAT
ATCAAGTCACATTTTCTATGTTGGAAATTTACAATGAACAAGTCCGTGAT
TTATTGACTAAAGATAATCCTAAAGGTGGTCTACCTGTCCGTCAAAATCC
CAAAATTGGTGCTTTTTATGTGCAAGGTTTAAAGTTTGTTGCTGTAGGat
cttataaagaaatcgaAGCCAGGACAGAAGAAGGAACTGCTAACAGAACG
GTTGCTTCAACACAGATGAATGCTACTAGTTCACGTGCACATACTGTTGT
CACCATTCAGTTTGACCAGATTGAAAAGAATGCTGCTGGAGAAGAGACCA
AGAAAAGCTCTGTCGTCAATTTGGTCGATTTAGCTGGATCTGAGCGTGCT
GGTTCTACTGGTGCAACAGGTGATCGTCTTAAAGAAGGTGCCAACATCAA
TCGTTCGCTATCATCTCTTGGTAATGTCATCTCAGCTCTGGCTGATCTCT
CTATGGGAAAGAAGAAAGTCCTTGTTCCTTATCGTGATTCCGTTTTGACC
AAGTTGTTACAAAATGCTTTGGGTGGAAACAGTAAAACTATTATGATTGC
TGCTTTATCACCAGCTGATATCAATTACGACGAAACTCTGGGTACACTTA
GgTATGCTGATCGTGCGAAGAAGATTAAAAATAAAGCCGTTGTGAATGAA
AATCCAATGGACAAATTGATTCGTGAACTAAAAGAAGAGAATGAGAAGTT
AAAGAAATTAATGGCAGGCGGTGATATGAGTGCATTACTGGCGGCCGATC
CAGCTGAAGGTGGTGGCGGAGGCGGAGGAGCTGCTGGTGGTGCTGTAATG
ACCGAAGAAGGTAACTGAATGGTCGGTTATGGTCCAAACAAAGGTATCGT
CCCAATCACTTGTGATGAATTGTTCAAATTGATTGAGGGCAGTACAACAG
AAACaAAATATCAAGTCACATTTTCTATGTTGGAAATTTACAATGAACAA
GTCCGTGATTTATTGACTAAAGATAATCCTAAAGGTGGTCTACCTGTCCG
TCAAAATCCCAAAATTGGTGCTTTTTATGTGCAAGGTTTAAAGTTTGTTG
CTGTAGGatcttataaagaaatcgaAGCCAGGACAGAAGAAGGAACTGCT
AACAGAACGGTTGCTTCAACACAGATGAATGCTACTAGTTCACGTGCACA
TACTGTTGTCACCATTCAGTTTGACCAGATTGAAAAGAATGCTGCTGGAG
AAGAGACCAAGAAAAGCTCTGTCGTCAATTTGGTCGATTTAGCTGGATCT
GAGCGTGCTGGTTCTACTGGTGCAACAGGTGATCGTCTTAAAGAAGGTGC
CAACATCAATCGTTCGCTATCATCTCTTGGTAATGTCATCTCAGCTCTGG
CTGATCTCTCTATGGGAAAGAAGAAAGTCCTTGTTCCTTATCGTGATTCC
GTTTTGACCAAGTTGTTACAAAATGCTTTGGGTGGAAACAGTAAAACTAT
TATGATTGCTGCTTTATCACCAGCTGATATCAATTACGACGAAACTCTGG
GTACACTTAGgTATGCTGATCGTGCGAAGAAGATTAAAAATAAAGCCGTT
GTGAATGAAAATCCAATGGACAAATTGATTCGTGAACTAAAAGAAGAGAA
TGAGAAGTTAAAGAAATTAATGGCAGGCGGTGATATGAGTGCATTACTGG
CGGCCGATCCAGCTGAAGGTGGTGGCGGAGGCGGAGGAGCTGCTGGTGGT
GCTGTAATGACCGAAGAAGGTAACTGAATGGTCGGTTATGGTCCAAACAA
AGGTATCGTCCCAATCACTTGTGATGAATTGTTCAAATTGATTGAGGGCA
GTACAACAGAAACaAAATATCAAGTCACATTTTCTATGTTGGAAATTTAC
AATGAACAAGTCCGTGATTTATTGACTAAAGATAATCCTAAAGGTGGTCT
ACCTGTCCGTCAAAATCCCAAAATTGGTGCTTTTTATGTGCAAGGTTTAA
AGTTTGTTGCTGTAGGatcttataaagaaatcgaAGCCAGGACAGAAGAA
GGAACTGCTAACAGAACGGTTGCTTCAACACAGATGAATGCTACTAGTTC
ACGTGCACATACTGTTGTCACCATTCAGTTTGACCAGATTGAAAAGAATG
CTGCTGGAGAAGAGACCAAGAAAAGCTCTGTCGTCAATTTGGTCGATTTA
GCTGGATCTGAGCGTGCTGGTTCTACTGGTGCAACAGGTGATCGTCTTAA
AGAAGGTGCCAACATCAATCGTTCGCTATCATCTCTTGGTAATGTCATCT
CAGCTCTGGCTGATCTCTCTATGGGAAAGAAGAAAGTCCTTGTTCCTTAT
CGTGATTCCGTTTTGACCAAGTTGTTACAAAATGCTTTGGGTGGAAACAG
TAAAACTATTATGATTGCTGCTTTATCACCAGCTGATATCAATTACGACG
AAACTCTGGGTACACTTAGgTATGCTGATCGTGCGAAGAAGATTAAAAAT
AAAGCCGTTGTGAATGAAAATCCAATGGACAAATTGATTCGTGAACTAAA
AGAAGAGAATGAGAAGTTAAAGAAATTAATGGCAGGCGGTGATATGAGTG
CATTACTGGCGGCCGATCCAGCTGAAGGTGGTGGCGGAGGCGGAGGAGCT
GCTGGTGGTGCTGTAATGACCGAAGAAGGTAACTGAATGGTCGGTTATGG
TCCAAACAAAGGTATCGTCCCAATCACTTGTGATGAATTGTTCAAATTGA
TTGAGGGCAGTACAACAGAAACaAAATATCAAGTCACATTTTCTATGTTG
GAAATTTACAATGAACAAGTCCGTGATTTATTGACTAAAGATAATCCTAA
AGGTGGTCTACCTGTCCGTCAAAATCCCAAAATTGGTGCTTTTTATGTGC
AAGGTTTAAAGTTTGTTGCTGTAGGatcttataaagaaatcgaAGCCAGG
ACAGAAGAAGGAACTGCTAACAGAACGGTTGCTTCAACACAGATGAATGC
TACTAGTTCACGTGCACATACTGTTGTCACCATTCAGTTTGACCAGATTG
AAAAGAATGCTGCTGGAGAAGAGACCAAGAAAAGCTCTGTCGTCAATTTG
GTCGATTTAGCTGGATCTGAGCGTGCTGGTTCTACTGGTGCAACAGGTGA
TCGTCTTAAAGAAGGTGCCAACATCAATCGTTCGCTATCATCTCTTGGTA
ATGTCATCTCAGCTCTGGCTGATCTCTCTATGGGAAAGAAGAAAGTCCTT
GTTCCTTATCGTGATTCCGTTTTGACCAAGTTGTTACAAAATGCTTTGGG
TGGAAACAGTAAAACTATTATGATTGCTGCTTTATCACCAGCTGATATCA
ATTACGACGAAACTCTGGGTACACTTAGgTATGCTGATCGTGCGAAGAAG
ATTAAAAATAAAGCCGTTGTGAATGAAAATCCAATGGACAAATTGATTCG
TGAACTAAAAGAAGAGAATGAGAAGTTAAAGAAATTAATGGCAGGCGGTG
ATATGAGTGCATTACTGGCGGCCGATCCAGCTGAAGGTGGTGGCGGAGGC
GGAGGAGCTGCTGGTGGTGCTGTAATGACCGAAGAAGGTAACTGAATGGT
CGGTTATGGTCCAAACAAAGGTATCGTCCCAATCACTTGTGATGAATTGT
TCAAATTGATTGAGGGCAGTACAACAGAAACaAAATATCAAGTCACATTT
TCTATGTTGGAAATTTACAATGAACAAGTCCGTGATTTATTGACTAAAGA
TAATCCTAAAGGTGGTCTACCTGTCCGTCAAAATCCCAAAATTGGTGCTT
TTTATGTGCAAGGTTTAAAGTTTGTTGCTGTAGGatcttataaagaaatc
gaAGCCAGGACAGAAGAAGGAACTGCTAACAGAACGGTTGCTTCAACACA
GATGAATGCTACTAGTTCACGTGCACATACTGTTGTCACCATTCAGTTTG
ACCAGATTGAAAAGAATGCTGCTGGAGAAGAGACCAAGAAAAGCTCTGTC
GTCAATTTGGTCGATTTAGCTGGATCTGAGCGTGCTGGTTCTACTGGTGC
AACAGGTGATCGTCTTAAAGAAGGTGCCAACATCAATCGTTCGCTATCAT
CTCTTGGTAATGTCATCTCAGCTCTGGCTGATCTCTCTATGGGAAAGAAG
AAAGTCCTTGTTCCTTATCGTGATTCCGTTTTGACCAAGTTGTTACAAAA
TGCTTTGGGTGGAAACAGTAAAACTATTATGATTGCTGCTTTATCACCAG
CTGATATCAATTACGACGAAACTCTGGGTACACTTAGgTATGCTGATCGT
GCGAAGAAGATTAAAAATAAAGCCGTTGTGAATGAAAATCCAATGGACAA
ATTGATTCGTGAACTAAAAGAAGAGAATGAGAAGTTAAAGAAATTAATGG
CAGGCGGTGATATGAGTGCATTACTGGCGGCCGATCCAGCTGAAGGTGGT
GGCGGAGGCGGAGGAGCTGCTGGTGGTGCTGTAATGACCGAAGAAGGTAA
CTGAATGGTCGGTTATGGTCCAAACAAAGGTATCGTCCCAATCACTTGTG
ATGAATTGTTCAAATTGATTGAGGGCAGTACAACAGAAACaAAATATCAA
GTCACATTTTCTATGTTGGAAATTTACAATGAACAAGTCCGTGATTTATT
GACTAAAGATAATCCTAAAGGTGGTCTACCTGTCCGTCAAAATCCCAAAA
TTGGTGCTTTTTATGTGCAAGGTTTAAAGTTTGTTGCTGTAGGatcttat
aaagaaatcgaAGCCAGGACAGAAGAAGGAACTGCTAACAGAACGGTTGC
TTCAACACAGATGAATGCTACTAGTTCACGTGCACATACTGTTGTCACCA
TTCAGTTTGACCAGATTGAAAAGAATGCTGCTGGAGAAGAGACCAAGAAA
AGCTCTGTCGTCAATTTGGTCGATTTAGCTGGATCTGAGCGTGCTGGTTC
TACTGGTGCAACAGGTGATCGTCTTAAAGAAGGTGCCAACATCAATCGTT
CGCTATCATCTCTTGGTAATGTCATCTCAGCTCTGGCTGATCTCTCTATG
GGAAAGAAGAAAGTCCTTGTTCCTTATCGTGATTCCGTTTTGACCAAGTT
GTTACAAAATGCTTTGGGTGGAAACAGTAAAACTATTATGATTGCTGCTT
TATCACCAGCTGATATCAATTACGACGAAACTCTGGGTACACTTAGgTAT
GCTGATCGTGCGAAGAAGATTAAAAATAAAGCCGTTGTGAATGAAAATCC
AATGGACAAATTGATTCGTGAACTAAAAGAAGAGAATGAGAAGTTAAAGA
AATTAATGGCAGGCGGTGATATGAGTGCATTACTGGCGGCCGATCCAGCT
GAAGGTGGTGGCGGAGGCGGAGGAGCTGCTGGTGGTGCTGTAATGACCGA
AGAAGGTAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014832XLOC_014832Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026417-proteinTCONS_00026417-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026417-exon-sc0000571-1491911889:165282..165307TCONS_00026417-exon-sc0000571-1491911889:165282..165307Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1510915933:165282..165307TCONS_00026417-exon-sc0000571-1510915933:165282..165307Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1575043694:165282..165307TCONS_00026417-exon-sc0000571-1575043694:165282..165307Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1491911889:165536..165657TCONS_00026417-exon-sc0000571-1491911889:165536..165657Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1510915933:165536..165657TCONS_00026417-exon-sc0000571-1510915933:165536..165657Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1575043694:165536..165657TCONS_00026417-exon-sc0000571-1575043694:165536..165657Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1491911889:165892..165970TCONS_00026417-exon-sc0000571-1491911889:165892..165970Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1510915933:165892..165970TCONS_00026417-exon-sc0000571-1510915933:165892..165970Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1575043694:165892..165970TCONS_00026417-exon-sc0000571-1575043694:165892..165970Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1491911889:166173..166236TCONS_00026417-exon-sc0000571-1491911889:166173..166236Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1510915933:166173..166236TCONS_00026417-exon-sc0000571-1510915933:166173..166236Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1575043694:166173..166236TCONS_00026417-exon-sc0000571-1575043694:166173..166236Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1491911889:166809..166898TCONS_00026417-exon-sc0000571-1491911889:166809..166898Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1510915933:166809..166898TCONS_00026417-exon-sc0000571-1510915933:166809..166898Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1575043694:166809..166898TCONS_00026417-exon-sc0000571-1575043694:166809..166898Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1491911889:167253..167349TCONS_00026417-exon-sc0000571-1491911889:167253..167349Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1510915933:167253..167349TCONS_00026417-exon-sc0000571-1510915933:167253..167349Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1575043694:167253..167349TCONS_00026417-exon-sc0000571-1575043694:167253..167349Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1491911889:168268..168420TCONS_00026417-exon-sc0000571-1491911889:168268..168420Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1510915933:168268..168420TCONS_00026417-exon-sc0000571-1510915933:168268..168420Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1575043694:168268..168420TCONS_00026417-exon-sc0000571-1575043694:168268..168420Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1491911889:168720..168984TCONS_00026417-exon-sc0000571-1491911889:168720..168984Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1510915933:168720..168984TCONS_00026417-exon-sc0000571-1510915933:168720..168984Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1575043694:168720..168984TCONS_00026417-exon-sc0000571-1575043694:168720..168984Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1491911889:169439..170004TCONS_00026417-exon-sc0000571-1491911889:169439..170004Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1510915933:169439..170004TCONS_00026417-exon-sc0000571-1510915933:169439..170004Clytia hemisphaericaexon
TCONS_00026417-exon-sc0000571-1575043694:169439..170004TCONS_00026417-exon-sc0000571-1575043694:169439..170004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000571supercontigsc0000571:165282..170004 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.437	19.6317	33.1641	33.7596	53.7288	45.9177	33.0874	31.77	36.2309	37.128	31.663	44.3297	19.7525	16.5446	0	0.656356	3.21463e-09	0	4.01246e-05	0	10.1998	2.92635	2.34084	10.5673	19.397	18.4491	7.56539	3.15488	8.97447	0.523589
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001752Kinesin_motor_dom
IPR019821Kinesin_motor_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003777microtubule motor activity
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity
Blast
[Close]
BLAST of TCONS_00026417 vs. Swiss-Prot (Human)
Match: KIF28 (Kinesin-like protein KIF28P OS=Homo sapiens GN=KIF28P PE=3 SV=2)

HSP 1 Score: 367.466 bits (942), Expect = 5.974e-116
Identity = 178/315 (56.51%), Postives = 237/315 (75.24%), Query Frame = 1 
Query:    4 FAFDFSYWSHDEFEADDAGVLRGT--SDKYADQRTVFNDLGQGVLDNAVKGFNCSLFAYGQTGAGKSYSMVGYGPNKGIVPITCDELFKLIEGSTTETKYQVTFSMLEIYNEQVRDLLTKDNPKGGLPVRQNPKIGAFYVQGLKFVAVGSYKEIEARTEEGTANRTVASTQMNATSSRAHTVVTIQFDQIEKNAAGEETKKSSVVNLVDLAGSERAGSTGATGDRLKEGANINRSLSSLGNVISALADLSMGKKKVLVPYRDSVLTKLLQNALGGNSKTIMIAALSPADINYDETLGTLRYADRAKKIKNKAVVN 942
            F FD +YWSH+ F+ D  GVL     S K+A QR VF+DLG+G+LD+A +G+N +L AYGQTG+GKSYSM+G+G  +GI+P  C+ELF+ IE      ++QV FSMLEIY E +RDLL++    GGL +R++ ++G FYV+GLK V   +Y +IE   E+GT  RT AST MNA+SSR+H V+TIQF Q+       +  K S +NLVDLA SER  S+G+ GDRL+EG+ +N SL++LG+VIS LAD +MGKK + +PYRDSVLTKLLQ+ALGGNS+T ++AA+SPADI Y+ETL TLRYA+R +KI+N+AV N
Sbjct:   52 FTFDLAYWSHNGFQRDKDGVLISADPSRKFAGQRDVFHDLGRGILDSAWQGYNATLLAYGQTGSGKSYSMIGFGCKQGIIPTVCEELFRAIENQGRNQEHQVMFSMLEIYKEIIRDLLSRTKKPGGLRIREDQQLG-FYVEGLKSVPCENYAQIERLMEQGTKIRTTASTNMNASSSRSHLVITIQFKQV---FLDRDLTKQSSINLVDLARSERQKSSGSEGDRLREGSCVNLSLTNLGSVISVLADAAMGKKVLHIPYRDSVLTKLLQSALGGNSRTALVAAVSPADICYEETLSTLRYAERERKIRNRAVAN 362
The following BLAST results are available for this feature:
BLAST of TCONS_00026417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KIF285.974e-11656.51Kinesin-like protein KIF28P OS=Homo sapiens GN=KIF... [more]
back to top