TCONS_00026424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026424
Unique NameTCONS_00026424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026424 ID=TCONS_00026424|Name=TCONS_00026424|organism=Clytia hemisphaerica|type=transcript|length=522bp
CTTCAATCAAAGATATGCAACGCAAAACAAATGTTGTGGAAAATCAACCT
AAAGCAATGAAAAaaAACGTATCAACTGTTGCAGACCGAAAAAATAAGTT
CTGGgaagaaatcaataaaaagacAACACAACCTATAGATACCGAAGATG
TTTTGAAAGCTATAAACAAAGTTAACGatacaggaaaatcaaaatcctcA
GGCAACTCGTTTTTGGCTGTTTTTCTGGGAGTACTTTTTCTTGGACTTTT
CGCtggttcttttgtttacttcatgacactcaaaaacaaaaataaGTCAC
CAGAACAGAACACGTACGGAGCAATGTTTGCTGAAGATTTCACTAAAGGA
CAAAATTCGggttctgtaaaatatcaacCAATCTCAACCATTGAGCCTGG
TCCATCAAACGCACCATGAAGTATGGAAGAGACGATCTGAATATTTTAAT
CTTTATAAGATAAATATCATTAGCCTTCTAAGATAGACTTCCAGTGtgtt
tttctttattctgaaaaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00026424-protein

>TCONS_00026424-protein ID=TCONS_00026424-protein|Name=TCONS_00026424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
SIKDMQRKTNVVENQPKAMKKNVSTVADRKNKFWEEINKKTTQPIDTEDV
LKAINKVNDTGKSKSSGNSFLAVFLGVLFLGLFAGSFVYFMTLKNKNKSP
EQNTYGAMFAEDFTKGQNSGSVKYQPISTIEPGPSNAP
Run BLAST on NCBI

transcript from alignment at sc0000571:64907..68375-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026424 ID=TCONS_00026424|Name=TCONS_00026424|organism=Clytia hemisphaerica|type=transcript|length=3469bp|location=Sequence derived from alignment at sc0000571:64907..68375- (Clytia hemisphaerica)
CTTCAATCAAAGATATGCAACGCAAAACAAATGTTGTGGAAAATCAACCT
AAAGCAATGAAAAGTATGCACGTTTTTTCATATAAGAACAATTTTACAAG
TCTAGGTTCTCAGAACAATGGAACAATCTTTTGTTTGGAACGATAGAGAT
TTAAGAACAGGCTCAACCCAAAATTTACAGGTTCTTTTAAAAAAAAAGCG
TGTAGCTTTTTTAATAACGGAGACCAATCAAGACTTCCAAAACACTTTAC
AATTTCACATTTTGTTGAAATTATAAGAAACTTGAAATAAGCTTTCCGAA
GGACACCCCAAAGTGGACTTGCGCTTTTTCAAAGCCGATCTAAATTTTTA
CTTTGGGAATAAGATTTTTTAGTTCTTTAACACTATAGAAAGAGTCTGAC
TTTTACGTGGGAATGAAATCTTGATAAATTGACGTTTTTTTTTCGGCACT
GTAATCTGTTTATTTCATTGGCTTAGATGCTGAATAACTGAGGGCTATAG
TAAAATAGAAATTTTACCAATTCGGTCCAGTCGTTCATCCATCTTCAAAA
GCCCTTCCTCCCCTCAAAAGGGTCGAAACTTAAATTTACAAGCTTTTTTA
CATTGAATTGACATGGATGTGGAGCAAGATTGATCAAAAAAGAGGAAAAG
AAAAACATTTTTTTGATTACCTTATCGGTCAAAACTTAGTCGGCCGTAAG
TGACTAAATTTTGACTTGGTGACTAAAATTAGGGCTGACTAAAATTTGGG
CCGACTAAAAATTTGGGCCAAATCAAAAGTTCATAAAGGATTCCTTATTT
TCTAGTATTTTAAGCTTTCTCCTATTTTCCATCTGCTTGTTAGTTTAGTT
AAATTTTTGTCGAGGGCCGACAAATAATTAAGGCCGACTAAAATTAAGGC
CGACTAAGTTTTGGCCGATAAGGTACCGTCAACTGCTCCAACTTGGAACG
AGTGGTCGCAACATGGGACTTGTTGATATCTGGCCTGTATTTTCACTTAC
TGTTAAAAATCTCTTTGACAACAAACTTGTTTTGATAACTCCACCAAGTT
TATCAATCATACTTTCTGTCATAACATGTCATGATAACTTTCACTGATAG
CGCGCCCTTTTTAACTTTTGTTTTCATTTAAAATGACCTGACGCTGAATG
GAGAATTAGAGAACATCCGCCGCCTAACCGCCCACCGCCCGATGAGATTA
ACAAATAGCGAGTTTTTAACTTGCCGCTCGAGTGACGTCAAACGCTCACA
TTCGCGCGTGTTCCACTACGGATTTTTTTCATATTTCGATTTAAAAGCCT
ACTCGGTGCGAAAGAGAAATCGTGTATTATTTAATACGCAGTTCATTAAA
CTCAAATCAAATGACTTTGGAGGTTCGGTGAAATGGTGGTGGAATGGCCG
TCCCATGTTGCGTCAGATAGCCCCAAGTTGGAGCAGTTGACGGTATATCA
GCATAATGTAACAATAGAAATATGTGTCTGATATGAAACAGGAACACTTA
TGTAAAAATAAAACCTTTGAAACTATTAAAAACAGGGTATCTTCACTGAT
AGCTGATACTACGGCACTTTTAAAATATATAAAGACTAATTTGCCGAAGT
CACATTATAATGAATGAAAATTTTATTTTTTCTAGAAAACGTATCAACTG
TTGCAGACCGAAAAAATAAGTTCTGGGAAGAAATCAATAAAAAGACAACA
CAACCTATAGATACCGAAGATGTTTTGAAAGCTATAAACAAAGTTAACGA
TACAGGAAAATCAAAATCCTCAGGCAACTCGTTTTTGGCTGTTTTTCTGG
GAGTACTTTTTCTTGGACTTTTCGCTGGTTCTTTTGTTTACTTCATGACA
CTCAAAAACAAAAATAAGTAAGTTTATTTATTTATATAATGTTTTGAACA
TTGTTCTAAGGAAAAGAAGTGAATTTTCCTTCCTAAAACTACAATCATGG
TCGAAATTTATTGAGAATTAAGCTTATTTTTATTCGATTTTGAGCCATCT
CTCAAATTTAATCGGATATTTCAATTTGGCTCGGGTTTATAGACCTCCAG
GCTATATTATGAGCCTTATTGGACCATTTTTGAACTTTTGGATCCTCAGA
TCCTAAGGTCCTAAAACTCAGAGTTTAAAGCACTTAGAAATCGATTGTGG
TTTCAAAACTTCCCGGTGGATTTACCTTTTTTCTCAAATAATACGACCAT
GATTGTACACCCTGATGCCCTGATAAAAACGATGATTTTTTGATTTGAAG
CACAACCGTAATGAAATATTAAAGAATTTCTTCATATTTCTTCATATTTA
CCAGCGGGAGAATTTGAAAGCCCCCTAATAATCAGCACTAATAATACGCA
GCTTCTACAGGAAACGTGCACCGGCCCGTTCGCCCGTCCTTTGATTTCCC
ACGGAATTCAATGGATTTCCGCCCTCTAATATAATCAATTAACAGACTAA
TTTGATAGTATAAAAATAGAGTTAAATAAAATTACCCCGATAGACAATAT
CCTTTCTTCTAAGCTAAATGCAAACAATAATCTTGTCTACCTGTAATTCT
GGGAGTACTTTTTCTTGGGCTCTTCGCTGGTTATTTTGATTACTTCATGA
CACTTAAAAACAAGAATAAGTTTATTGCCCCGCAAGGGGATTTGTTGCTT
CGCGGTGTGGAAAAAAGTTCCGATATTTTTTATTTTACTATAATCTAACG
AACCAAAAAACATGGAGTTTTCAATGGACAGAATGAGAGAAGCGTTCAGC
GAATAGAATTCTCTAGCTATGCGTTTGGTAGGCTGCTGGCGTCCACCACT
TGATTCATGCTTCTTATAGTTCTTGGGTTTTGCGGCACATCAAAGGCCGA
CTATCATTCCTCTCCGATGGAAAATTGGTTTAGAGCGTAAAGTAAGTTTG
CGACCGCAGTCGAGGGCGACCCGAAGGCTCCCTTTTCGTATAGCTGTCTA
CCCGAAGGTAGGGGGGCACCACTCCTTTCCCTGGATTTCTCCACTTACCC
TTGATCTCTTTAGTTGCTGAGCATCAAGCAGAGAGGTATCAAGTATCATT
TTAGGAATCTTTGGTATGACCCGGCTGGGGATCGAACCCACAACCTTGCG
TACCGTAGCCGGATGCACTGCCTTTATGCTACGGTTGCTTAGAGCTTTAG
CGTGGGCGGCCGCCAATCCACCATCGGAATGTCAGCTAACTTGCCTATCT
GTAATATAAGTTTTAATCTTTTTCTTTACTCATCATTTCAAGGTCACCAG
AACAGAACACGTACGGAGCAATGTTTGCTGAAGATTTCACTAAAGGACAA
AATTCGGGTTCTGTAAAATATCAACCAATCTCAACCATTGAGCCTGGTCC
ATCAAACGCACCATGAAGTATGGAAGAGACGATCTGAATATTTTAATCTT
TATAAGATAAATATCATTAGCCTTCTAAGATAGACTTCCAGTGTGTTTTT
CTTTATTCTGAAAAAAAAT

Coding sequence (CDS) from alignment at sc0000571:64907..68375-

>TCONS_00026424 ID=TCONS_00026424|Name=TCONS_00026424|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at sc0000571:64907..68375- (Clytia hemisphaerica)
GTCACCAGAACAGAACACGTACGGAGCAATGTTTGCTGAAGATTTCACTA
AAGGACAAAATTCGGGTTCTGTAAAATATCAACCAATCTCAACCATTGAG
CCTGGTCCATCAAACGCACCATGAAAAACGTATCAACTGTTGCAGACCGA
AAAAATAAGTTCTGGGAAGAAATCAATAAAAAGACAACACAACCTATAGA
TACCGAAGATGTTTTGAAAGCTATAAACAAAGTTAACGATACAGGAAAAT
CAAAATCCTCAGGCAACTCGTTTTTGGCTGTTTTTCTGGGAGTACTTTTT
CTTGGACTTTTCGCTGGTTCTTTTGTTTACTTCATGACACTCAAAAACAA
AAATAATCAATCAAAGATATGCAACGCAAAACAAATGTTGTGGAAAATCA
ACCTAAAGCAATGAAAAGTCACCAGAACAGAACACGTACGGAGCAATGTT
TGCTGAAGATTTCACTAAAGGACAAAATTCGGGTTCTGTAAAATATCAAC
CAATCTCAACCATTGAGCCTGGTCCATCAAACGCACCATGAAAAACGTAT
CAACTGTTGCAGACCGAAAAAATAAGTTCTGGGAAGAAATCAATAAAAAG
ACAACACAACCTATAGATACCGAAGATGTTTTGAAAGCTATAAACAAAGT
TAACGATACAGGAAAATCAAAATCCTCAGGCAACTCGTTTTTGGCTGTTT
TTCTGGGAGTACTTTTTCTTGGACTTTTCGCTGGTTCTTTTGTTTACTTC
ATGACACTCAAAAACAAAAATAATCAATCAAAGATATGCAACGCAAAACA
AATGTTGTGGAAAATCAACCTAAAGCAATGAAAAGTCACCAGAACAGAAC
ACGTACGGAGCAATGTTTGCTGAAGATTTCACTAAAGGACAAAATTCGGG
TTCTGTAAAATATCAACCAATCTCAACCATTGAGCCTGGTCCATCAAACG
CACCATGAAAAACGTATCAACTGTTGCAGACCGAAAAAATAAGTTCTGGG
AAGAAATCAATAAAAAGACAACACAACCTATAGATACCGAAGATGTTTTG
AAAGCTATAAACAAAGTTAACGATACAGGAAAATCAAAATCCTCAGGCAA
CTCGTTTTTGGCTGTTTTTCTGGGAGTACTTTTTCTTGGACTTTTCGCTG
GTTCTTTTGTTTACTTCATGACACTCAAAAACAAAAATAATCAATCAAAG
ATATGCAACGCAAAACAAATGTTGTGGAAAATCAACCTAAAGCAATGAAA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014836XLOC_014836Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026424-proteinTCONS_00026424-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026424-exon-sc0000571-1575043694:68313..68375TCONS_00026424-exon-sc0000571-1575043694:68313..68375Clytia hemisphaericaexon
TCONS_00026424-exon-sc0000571-1575043694:66509..66740TCONS_00026424-exon-sc0000571-1575043694:66509..66740Clytia hemisphaericaexon
TCONS_00026424-exon-sc0000571-1575043694:64907..65133TCONS_00026424-exon-sc0000571-1575043694:64907..65133Clytia hemisphaericaexon
TCONS_00026424-exon-sc0000571-1510915933:68313..68375TCONS_00026424-exon-sc0000571-1510915933:68313..68375Clytia hemisphaericaexon
TCONS_00026424-exon-sc0000571-1510915933:66509..66740TCONS_00026424-exon-sc0000571-1510915933:66509..66740Clytia hemisphaericaexon
TCONS_00026424-exon-sc0000571-1510915933:64907..65133TCONS_00026424-exon-sc0000571-1510915933:64907..65133Clytia hemisphaericaexon
TCONS_00026424-exon-sc0000571-1491911889:68313..68375TCONS_00026424-exon-sc0000571-1491911889:68313..68375Clytia hemisphaericaexon
TCONS_00026424-exon-sc0000571-1491911889:66509..66740TCONS_00026424-exon-sc0000571-1491911889:66509..66740Clytia hemisphaericaexon
TCONS_00026424-exon-sc0000571-1491911889:64907..65133TCONS_00026424-exon-sc0000571-1491911889:64907..65133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000571supercontigsc0000571:64907..68375 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1536	0.994784	0.385013	1.25558	1.06999	0.362365	2.04016	1.77355	2.10135	1.89299	2.29672	2.56662	1.05537	0.313147	1.41597	0.96699	0.765805	1.65707	0.240982	0	0.547954	1.28291	1.42958	0.708926	1.33866	2.82388	0.777109	0.829352	0.629034	0.769063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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