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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026425 ID=TCONS_00026425|Name=TCONS_00026425|organism=Clytia hemisphaerica|type=transcript|length=1348bp
CAAATTTTATGACATTTAATATGTGATACGAAACCCTTGAGAATTTCGga
gatattttccaaatttcaaaaggaaGCTCGCATAAAAACTGAAGTGTTCA
AATTGCATGACGGGTAAACGACATAATATGAAATGGTGACGTTGGCAACA
CATTTTtgaattaataaaataaatttgacgtcaaatttaaaattaatttt
caaaaaataaaaagataaagatttttCTAACAAATTAGTTCAATGCTTCC
AAGCGACAATCATGGTCGATAAATCAACATGAAATTTCTTTGGATTTTGA
TTGTCTCCTTAACTTGCGTCGAACCTGCTTTAGGCAAAGGTATTTTATAG
TTTTTCATAGTTTTCTTCttacttttttccaactgaaaattatatttgag
atatttttaagcataaattttagatttttatttagGTCTACTTTAAAGGT
taagattttctaaaaattattcCATAAAGGCTAGATACTGCACTCTGTCC
AGGGAAATCGCAAAGCTGAAAATGTCCTTCCCGACTGCTacataacgtta
tatggacgttgtatAAAATTAAAATGAGCATTGGGAGGGGTGACATTCAC
GATGTCTAGAGGGTGGTTTGATGCTTGTACGTAAGAGTAGGCAAGAGGGG
TActaaatttgtgtaggagagcagatttatATAACAATGctgttatcttt
ttatattatgagtagacacaaattttgcgccctcttgtctacgctactag
TCCATGGTTAAATCATTAAAAGAAGATGGCTTATGTCTCACATTAATTTT
GTCATTAACTTTCTCTTCATTATAGCTACTAAACCTGGAGAAAAATGTCC
CGCACCacggaaaattgaaaaatgttctgGAGATACAGCTAATTTGCCAG
CTTAcggtaaaatcaagaaaaacgtgACATACAGTTGGTTTACCGTCCTT
GGAAGTCAATCGCTGACCAAAACTAAATTACGAGCTCTGAAGCTTAGTGT
CAAAGATAAAACATTGACCCTTCCAAACCTTAAATGGTTTCAATCAGCAC
GTTATTCGTACCGTCCTTCGAGCAGTGTGAATGTCAGTTGCAGCGACTAC
GATTTGCGAGTCTCTAATGGAAGATTAAAAGCGATCACACGTAATTGGAC
TACCGCAATAGAAAATGGCAATCTTTACGTGAAAGTTGAAGCTTTCTATC
CTGGTAAAGCAAAATGGTATCTCAATAACAAATTATTACCATTGCCTGGA
GGTCTGAAGACACCAAGCAAACATTTCAAATATGCTAAAATTGAAGACTT
CGGTCTATCGTTTGGCTCCGGTAAGgtggtttttttttctgatgtcTA Run BLAST on NCBI transcript from alignment at sc0000571:68742..71864- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026425 ID=TCONS_00026425|Name=TCONS_00026425|organism=Clytia hemisphaerica|type=transcript|length=3123bp|location=Sequence derived from alignment at sc0000571:68742..71864- (Clytia hemisphaerica)
CAAATTTTATGACATTTAATATGTGATACGAAACCCTTGAGAATTTCGGA
GATATTTTCCAAATTTCAAAAGGAAGCTCGCATAAAAACTGAAGTGTTCA
AATTGCATGACGGGTAAACGACATAATATGAAATGGTGACGTTGGCAACA
CATTTTTGAATTAATAAAATAAATTTGACGTCAAATTTAAAATTAATTTT
CAAAAAATAAAAAGATAAAGATTTTTCTAACAAATTAGTTCAATGCTTCC
AAGCGACAATCATGGTCGATAAATCAACATGAAATTTCTTTGGATTTTGA
TTGTCTCCTTAACTTGCGTCGAACCTGCTTTAGGCAAAGGTATTTTATAG
TTTTTCATAGTTTTCTTCTTACTTTTTTCCAACTGAAAATTATATTTGAG
ATATTTTTAAGCATAAATTTTAGATTTTTATTTAGGTCTACTTTAAAGGT
TAAGATTTTCTAAAAATTATTCCATAAAGGCTAGATACTGCACTCTGTCC
AGGGAAATCGCAAAGCTGAAAATGTCCTTCCCGACTGCTACATAACGTTA
TATGGACGTTGTATAAAATTAAAATGAGCATTGGGAGGGGTGACATTCAC
GATGTCTAGAGGGTGGTTTGATGCTTGTACGTAAGAGTAGGCAAGAGGGG
TACTAAATTTGTGTAGGAGAGCAGATTTATATAACAATGCTGTTATCTTT
TTATATTATGAGTAGACACAAATTTTGCGCCCTCTTGTCTACGCTACTAG
TCCATGGTTAAATCATTAAAAGAAGATGGCTTATGTCTCACATTAATTTT
GTCATTAACTTTCTCTTCATTATAGCTACTAAACCTGGAGAAAAATGTCC
CGCACCACGGAAAATTGAAAAATGTTCTGGAGATACAGCTAATTTGCCAG
CTTACGGTAAAATCAAGAAAAACGTGACATACAGTTGGTTTACCGTCCTT
GGAAGTCAATCGCTGACCAAAACTAAATTACGAGCTCTGAAGCTTAGTGT
CAAAGATAAAACATTGACCCTTCCAAACCTTAAATGGTTTCAATCAGCAC
GTTATTCGTACCGTCCTTCGAGCAGTGTGAATGTCAGTTGCAGCGACTAC
GATTTGCGAGTCTCTAGTAAGTTGTGTTAATTTTTCGTTCTTATTTCTTA
TTTTTTCAAAGGATGCACAGAAGATGTTTCTTTAGCCTATATTAACTCAC
TAAAAGATTGATTTTCATATACGTCCAGGAAACTAAATTATTCAACCTCG
AAAAGTGTATCCACTTTTACTGCATTTTTAGTTTTTCGGTTTTAGTGCTG
TATACCGCAATTGTTGGATATCCTCCACTAAATTAGACTAGTAGAACTTT
CTTCTAATACACTCCTGCCTCACAGCCCCGATGGAACATTTTTCCTCAGT
GGGGATAAAAACTCCTGTTGAAATTCCGATGGGGATAGAAATTCTATTGT
TCCAAGGTTAAAAAATCCAGTGGGGTGGGTTTGAAATGCAATATTTAAAC
ATTGAATTTCGAATGGGTATGAAAGTCAATTCCCTGGGGCTGAAATATTA
GGGTGTTTTCCCACTGGGAACAAAATTTTGCCAAATTTTCCAGTGAGGCT
GGGGTCCCAGCGGGTCTGTGACACAGGGGTGTTCTAATATTGAACTTTTT
GATAACTTTTGCAGTACCATTTGTTCCAGTTAAGGGCTCTGACCATAGTG
AATTTTTCATAATTGCCGTGTTTAAAATGTATTTTCTGACTGATGTAACC
AACAAAACTATGGTATGTTATACATTTTCTGTTAGACAAACTATTCCTGA
ATCTGAAAATTCAAAAATTGCATTGGAAAAATTTGATGAAGAAGAAAATG
AAGACTTTTGCGAGGAAGACTATTTCAACTTTGAAGAGCTTAGTTTCGGC
GAAGAAAAAACATTTTGAAAATTTTTTCGCAGTAGATGGTGTATCTTTTA
CCGAACAATAAAGATTTTTGCGGAAAATGTTTGTAAATGCTTCTTTATCT
CGAAATCTTCAAAACAGTGGTTTTTCATCAATTTTTCATCTGGATTTTGC
TTAAAAAAACAGTCATAACTTTTGACACATCTTTTTAGAAAAATTTTCCG
CAAAATTTAAAATAGTTCAATTCTTTGCGGACAGTTTGAAAAAAGTTCGA
AACAGAAAGGTTAATTACCCATTAAAACTTAGCACTTTTTATAAAAGAGG
GTGATGCAACATATTATTAACATCTTTTTAAAGTTCATAACGTCATTTTT
GCAATTAAATTCTTAATTACTCTTAAGGGATTCGATTAAAAAGCAATTTA
TAAAGGCAATTCTTTGTTAAAAATGTTAAGGAACCTGAAATATAACTTTT
ATGTTCAAATACCAAAATCAATTTGTGGACTATGGTCAGAGCCCTTAAGT
AGAATAGAATTAAAAAAGAACATTTACAGTAAGCTTCACGGATTAGCTTT
CTCTAAAGATTTACCTGTGAGGACAGACTGTAAGAATTTTATCGCGATGA
AATATGGCGTCCAAGTATTCTAAAAAATTTCCGTTGCACAGGATGAGCAG
AAGTCTAGCGTCCAGGCTACAACTAACCTGTATTACCCACTGACCTTTAT
ATACCCTGGACCAATTTTCTCAATCCCAGCCAAGCAAAATCTTTAATTGA
AGTTTTTTTAAATTGGTACCCTAATGGCGGCACTACTCAATAGCGGTGTA
AATGAATCGAGAGCGCTAGATCTACTTTCCCTCAAAATCTTTTGATGGTG
TAGCGCCGTTAAACGTTAATTCTTAACACTGCAATGGCTTCTTTACGGGT
ACCAATTCAAGAAAAAACTTCGATCAAAGATGACGGATATAGCTTGGTCC
AGGGATATATAAAGGTCAGTGGTATTACCTCTATATTTTAGATGGAAGAT
TAAAAGCGATCACACGTAATTGGACTACCGCAATAGAAAATGGCAATCTT
TACGTGAAAGTTGAAGCTTTCTATCCTGGTAAAGCAAAATGGTATCTCAA
TAACAAATTATTACCATTGCCTGGAGGTCTGAAGACACCAAGCAAACATT
TCAAATATGCTAAAATTGAAGACTTCGGTCTATCGTTTGGCTCCGGTAAG
GTGGTTTTTTTTTCTGATGTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026425-exon-sc0000571-1575043694:70749..71864 | TCONS_00026425-exon-sc0000571-1575043694:70749..71864 | Clytia hemisphaerica | exon |
| TCONS_00026425-exon-sc0000571-1575043694:68742..68973 | TCONS_00026425-exon-sc0000571-1575043694:68742..68973 | Clytia hemisphaerica | exon |
| TCONS_00026425-exon-sc0000571-1510915933:70749..71864 | TCONS_00026425-exon-sc0000571-1510915933:70749..71864 | Clytia hemisphaerica | exon |
| TCONS_00026425-exon-sc0000571-1510915933:68742..68973 | TCONS_00026425-exon-sc0000571-1510915933:68742..68973 | Clytia hemisphaerica | exon |
| TCONS_00026425-exon-sc0000571-1491911889:70749..71864 | TCONS_00026425-exon-sc0000571-1491911889:70749..71864 | Clytia hemisphaerica | exon |
| TCONS_00026425-exon-sc0000571-1491911889:68742..68973 | TCONS_00026425-exon-sc0000571-1491911889:68742..68973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000571 | supercontig | sc0000571:68742..71864 - |
Blast
The following BLAST results are available for this feature:
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