TCONS_00026533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026533
Unique NameTCONS_00026533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026533 ID=TCONS_00026533|Name=TCONS_00026533|organism=Clytia hemisphaerica|type=transcript|length=766bp
ttttttccccgataattcAATAAGGGTCTCTATATTTTGAGGTTAATAAG
AGTCTATATATTGTCAAATTAACCTCAaaaaataaacctttttcaagttt
ttttttcatttttgggtaCAAGCCATCAATTATGACCACCtctcaaaatt
tcaaccttttaagataaaaaatgaagattttatgGCCAATAATgtaaatt
ttccactttttcctccaaaaaattaactttttcttaggCGACATTGATTT
GAGATGGTCCTTATTACTAGATCTCGTTTTTCTAGTTCTGTTGGAACGGT
CTGCTTAAACTGTTGCAGTGCGCGATAGTCTGAAGTTACTTTCCCGATAT
CGTCAGCATACTCCATTTCGATATCGATTTGTTCTATTTCTGTGACAATG
GCGTAATCGTGGTCTGTTAGATGGTCAGCAGGAATGGATGGTACAGTAGG
AAGTGCATCAGGATGGTTGGGTATTTGGTGGTTTTTCAGCGGATGTAGTG
CTTTTGCTAGGTAGTACGTAAATTCGTTAGCACTTACACAGTCTCCTTGT
GGTGCTCCGGTGTCAGTTGCGAACTCAGAGCTTAGAGTTTGTTTGCATTT
GACACTGAGCGATACATTAAGGAGGACTGAAATAATGTGGAGTTCGTCTG
GTGAGATGGTAGATTGTAAGTCATACAGCAGTTTGTTTCTATTAAGACTG
TCGAACGCTTTGCTCATATCAAGAAGTATTAAGTGAACGGCTTCACATTT
TGATGTTATAGTGTTA
Run BLAST on NCBI

protein sequence of TCONS_00026533-protein

>TCONS_00026533-protein ID=TCONS_00026533-protein|Name=TCONS_00026533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
NTITSKCEAVHLILLDMSKAFDSLNRNKLLYDLQSTISPDELHIISVLLN
VSLSVKCKQTLSSEFATDTGAPQGDCVSANEFTYYLAKALHPLKNHQIPN
HPDALPTVPSIPADHLTDHDYAIVTEIEQIDIEMEYADDIGKVTSDYRAL
QQFKQTVPTELEKRDLVIRTISNQCRLRKS
Run BLAST on NCBI

transcript from alignment at sc0000574:1..766

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026533 ID=TCONS_00026533|Name=TCONS_00026533|organism=Clytia hemisphaerica|type=transcript|length=766bp|location=Sequence derived from alignment at sc0000574:1..766 (Clytia hemisphaerica)
TAACACTATAACATCAAAATGTGAAGCCGTTCACTTAATACTTCTTGATA
TGAGCAAAGCGTTCGACAGTCTTAATAGAAACAAACTGCTGTATGACTTA
CAATCTACCATCTCACCAGACGAACTCCACATTATTTCAGTCCTCCTTAA
TGTATCGCTCAGTGTCAAATGCAAACAAACTCTAAGCTCTGAGTTCGCAA
CTGACACCGGAGCACCACAAGGAGACTGTGTAAGTGCTAACGAATTTACG
TACTACCTAGCAAAAGCACTACATCCGCTGAAAAACCACCAAATACCCAA
CCATCCTGATGCACTTCCTACTGTACCATCCATTCCTGCTGACCATCTAA
CAGACCACGATTACGCCATTGTCACAGAAATAGAACAAATCGATATCGAA
ATGGAGTATGCTGACGATATCGGGAAAGTAACTTCAGACTATCGCGCACT
GCAACAGTTTAAGCAGACCGTTCCAACAGAACTAGAAAAACGAGATCTAG
TAATAAGGACCATCTCAAATCAATGTCGcctaagaaaaagttaatttttt
ggaggaaaaagtggaaaatttacATTATTGGCcataaaatcttcattttt
tatcttaaaaggttgaaattttgagaGGTGGTCATAATTGATGGCTTGta
cccaaaaatgaaaaaaaaacttgaaaaaggtttatttttTGAGGTTAATT
TGACAATATATAGACTCTTATTAACCTCAAAATATAGAGACCCTTATTga
attatcggggaaaaaa

Coding sequence (CDS) from alignment at sc0000574:1..766

>TCONS_00026533 ID=TCONS_00026533|Name=TCONS_00026533|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000574:1..766 (Clytia hemisphaerica)
AACACTATAACATCAAAATGTGAAGCCGTTCACTTAATACTTCTTGATAT
GAGCAAAGCGTTCGACAGTCTTAATAGAAACAAACTGCTGTATGACTTAC
AATCTACCATCTCACCAGACGAACTCCACATTATTTCAGTCCTCCTTAAT
GTATCGCTCAGTGTCAAATGCAAACAAACTCTAAGCTCTGAGTTCGCAAC
TGACACCGGAGCACCACAAGGAGACTGTGTAAGTGCTAACGAATTTACGT
ACTACCTAGCAAAAGCACTACATCCGCTGAAAAACCACCAAATACCCAAC
CATCCTGATGCACTTCCTACTGTACCATCCATTCCTGCTGACCATCTAAC
AGACCACGATTACGCCATTGTCACAGAAATAGAACAAATCGATATCGAAA
TGGAGTATGCTGACGATATCGGGAAAGTAACTTCAGACTATCGCGCACTG
CAACAGTTTAAGCAGACCGTTCCAACAGAACTAGAAAAACGAGATCTAGT
AATAAGGACCATCTCAAATCAATGTCGcctaagaaaaagttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014920XLOC_014920Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026533-proteinTCONS_00026533-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026533-exon-sc0000574-1491911889:1..766TCONS_00026533-exon-sc0000574-1491911889:1..766Clytia hemisphaericaexon
TCONS_00026533-exon-sc0000574-1510915933:1..766TCONS_00026533-exon-sc0000574-1510915933:1..766Clytia hemisphaericaexon
TCONS_00026533-exon-sc0000574-1575043694:1..766TCONS_00026533-exon-sc0000574-1575043694:1..766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000574supercontigsc0000574:1..766 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96918	2.76762	4.87891	3.65355	2.58989	1.49889	2.13485	2.06321	1.04415	0.828907	0.10051	0.815985	0.639512	1.06234	0.587397	0.342696	0.258213	0.416055	0.274633	0.305759	1.25297	0.870002	0.488475	0.39301	0.157646	0.38788	0.301795	0.316339	0.478954	0.0943677
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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