TCONS_00026557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026557
Unique NameTCONS_00026557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026557 ID=TCONS_00026557|Name=TCONS_00026557|organism=Clytia hemisphaerica|type=transcript|length=314bp
GACATCTGGTGGATTTTTGATTATGATTGATGTGTTTGAGATTGAAAACG
AATTCATCTATCATCTCGAACAATCTGGATCTAGCAATGAGCAATTGACG
CAAGGAGGTATTTTGAAAGTGGAGCTTGCACACAAAGTCACCATAACTGT
CAAAGGGAAAATCACAAGTGTATCCACGCGACTTGACGGTTTATTTGTCA
CCACAACTGAAGGTTGGATATATCGCTTCAATTGGAATGGTGTTTTAAGC
AATGACCTTTCGACACCCATCTACGATTTAGTATTCTGTGTAGACCTCGA
TTCGCCAGCCCCAG
Run BLAST on NCBI

protein sequence of TCONS_00026557-protein

>TCONS_00026557-protein ID=TCONS_00026557-protein|Name=TCONS_00026557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
TSGGFLIMIDVFEIENEFIYHLEQSGSSNEQLTQGGILKVELAHKVTITV
KGKITSVSTRLDGLFVTTTEGWIYRFNWNGVLSNDLSTPIYDLVFCVDLD
SPAP
Run BLAST on NCBI

transcript from alignment at sc0000575:120684..122700+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026557 ID=TCONS_00026557|Name=TCONS_00026557|organism=Clytia hemisphaerica|type=transcript|length=2017bp|location=Sequence derived from alignment at sc0000575:120684..122700+ (Clytia hemisphaerica)
GACATCTGGTGGATTTTTGATTATGATTGATGTGTTTGAGATTGAAAACG
AATTCATCTATCATCTCGAACAATCTGGGTAAGTGGAAAGTTTCTGTTTC
TGTTGCTTTTTAAAGCCGGTCTCATTTTTCGCGCGAAAatgagaaaacat
tttttgtcaattcttttTGCCCGCAAAAATGATTACGTAAGATTTGCCCA
ATGTAATTGCTTTGTTTTtccaaccgaccaatgaccttgcctgtaccaga
cgaccacggctttttccttgACACCGTTGacagagtgataaaaaaatcgc
gtgttgggatagagataggctaACAATGATCTTACAACAAAGAAAGACGT
TAAAAAGTGTTATCTCATTTGGCGTGAAAGTGGAGACCGTCCATTATGAT
GAATTATTTCAGAAAGAATGGTTCCCTTGTACAATTTTTCGATTATAATT
CTGATGATAAGCACGCTTCCTAAAGgtttggggacacgagaagttttttt
tgcgttggtgcaatgcaacatgatgcatcccaccaacctgaaacgctttc
tcgtgtatccaccccatttttctttctaccaataacagtgaaatctcact
tttgctCCATTGGGGTATTTTCCTCACTTTTTGtctcatgaaacaaaaaa
agaaaccatgggatgGGACACGCACTTTCTTTCTTGttatgttgcattgc
accaacatgaaaaaaacttctcgtgtccccaagccttaagaaCAAAATTg
ctcattttattattttgttttaattttctgcAAAGAAAAGTTAAgaagcg
atggccaagtggtaaAAGGCTCAAATCCGTGCTCTTTCCAATGCTCTGTT
CAGCTCATAGATAGCCGAgacggctggccgtggaccctgTGAAAATAATC
GAAAGATTACCTAAAAGTCCTATATTCCTGGGCTATCCACGTtcaaatat
cgactctatctatctaaGATGTAGATTGAAATTCGAGGTAGTGGCGAATT
TTATCTCAACatcatattttttcatcaatttttctagATCTAGCAATGAG
CAATTGACGCAAGGAGGTATTTTGAAAGTGGAGCTTGCACACAAAGTCAC
CATAACTGTCAAAGGGAAAATCACAAGGTAATAATTACCATTTTGATCGA
GTTTGTAATTACTTTCTATAACGGAATCTTCTCCATTACTCGGGAAAGTT
TCCCTGCTCCTTGAAAACTATATTAACTCATttgatttgttcttataaac
tgggtccTAATAAAAAAACTATTCTACACCCCTattctttgagaaaaata
aacctGCAAAAACGACAATAGCCTGACCCTAATtgaaacacaagaaaaag
taGGTATTTGACCCCTATCTGTTACTTAAAATAGAAACACGGTGGTCAAA
ATCCGGTTTAtttcgggtgcttccgttagAAAATATGACGCCTTCTTGAC
TTAATCATATTAAGAATATATCCTAGATCAAACTTGTGATAGTTCCAACA
AATAAATCCTTAATTATATTAACTCTCATTAATTTGATTTGCATGTGCGT
GTTCGATGAACTAAGGAAATTCCAGGGTAGAGTAGGCGCCACCCTCCGCC
TCCTCCCTCCCCTCCCCCAAAAAAATCAGCTGCTAGTGAAGTTGCCCCTG
CTGTATAATTACATTACTACAATGGCAAAAGTTATATGTTGTATCTTTCT
CAAGGTTAGACGAATCGATGATGTCAGAGTGCTCGATGGATAGCCAGAGC
CATATAATTATCAGGAAAAGTTATCTTTCAATCCATCAAAACAAtaacta
aaaattttaaaatgagtACATAACTCAGACTTTCATGTTTCCACATGAAA
TGTTGTATTTTTCTGCTTTAGTGTATCCACGCGACTTGACGGTTTATTTG
TCACCACAACTGAAGGTTGGATATATCGCTTCAATTGGAATGGTGTTTTA
AGCAATGACCTTTCGACACCCATCTACGATTTAGTATTCTGTGTAGACCT
CGATTCGCCAGCCCCAG

Coding sequence (CDS) from alignment at sc0000575:120684..122700+

>TCONS_00026557 ID=TCONS_00026557|Name=TCONS_00026557|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000575:120684..122700+ (Clytia hemisphaerica)
ACATCTGGTGGATTTTTGATTATGATTGATGTGTTTGAGATTGAAAACGA
ATTCATCTATCATCTCGAACAATCTGGATCTAGCAATGAGCAATTGACGC
AAGGAGGTATTTTGAAAGTGGAGCTTGCACACAAAGTCACCATAACTGTC
AAAGGGAAAATCACAAGTGTATCCACGCGACTTGACGGTTTATTTGTCAC
CACAACTGAAGGTTGGATATATCGCTTCAATTGGAATGGTGTTTTAAGCA
ATGACCTTTCGACACCCATCTACGATTTAGTATTCTGTGTAGACCTCGAT
TCGCCAGCCCCAACATCTGGTGGATTTTTGATTATGATTGATGTGTTTGA
GATTGAAAACGAATTCATCTATCATCTCGAACAATCTGGATCTAGCAATG
AGCAATTGACGCAAGGAGGTATTTTGAAAGTGGAGCTTGCACACAAAGTC
ACCATAACTGTCAAAGGGAAAATCACAAGTGTATCCACGCGACTTGACGG
TTTATTTGTCACCACAACTGAAGGTTGGATATATCGCTTCAATTGGAATG
GTGTTTTAAGCAATGACCTTTCGACACCCATCTACGATTTAGTATTCTGT
GTAGACCTCGATTCGCCAGCCCCAACATCTGGTGGATTTTTGATTATGAT
TGATGTGTTTGAGATTGAAAACGAATTCATCTATCATCTCGAACAATCTG
GATCTAGCAATGAGCAATTGACGCAAGGAGGTATTTTGAAAGTGGAGCTT
GCACACAAAGTCACCATAACTGTCAAAGGGAAAATCACAAGTGTATCCAC
GCGACTTGACGGTTTATTTGTCACCACAACTGAAGGTTGGATATATCGCT
TCAATTGGAATGGTGTTTTAAGCAATGACCTTTCGACACCCATCTACGAT
TTAGTATTCTGTGTAGACCTCGATTCGCCAGCCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014937XLOC_014937Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026557-proteinTCONS_00026557-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026557-exon-sc0000575-1491911889:120684..120761TCONS_00026557-exon-sc0000575-1491911889:120684..120761Clytia hemisphaericaexon
TCONS_00026557-exon-sc0000575-1510915933:120684..120761TCONS_00026557-exon-sc0000575-1510915933:120684..120761Clytia hemisphaericaexon
TCONS_00026557-exon-sc0000575-1575043694:120684..120761TCONS_00026557-exon-sc0000575-1575043694:120684..120761Clytia hemisphaericaexon
TCONS_00026557-exon-sc0000575-1491911889:121721..121810TCONS_00026557-exon-sc0000575-1491911889:121721..121810Clytia hemisphaericaexon
TCONS_00026557-exon-sc0000575-1510915933:121721..121810TCONS_00026557-exon-sc0000575-1510915933:121721..121810Clytia hemisphaericaexon
TCONS_00026557-exon-sc0000575-1575043694:121721..121810TCONS_00026557-exon-sc0000575-1575043694:121721..121810Clytia hemisphaericaexon
TCONS_00026557-exon-sc0000575-1491911889:122555..122700TCONS_00026557-exon-sc0000575-1491911889:122555..122700Clytia hemisphaericaexon
TCONS_00026557-exon-sc0000575-1510915933:122555..122700TCONS_00026557-exon-sc0000575-1510915933:122555..122700Clytia hemisphaericaexon
TCONS_00026557-exon-sc0000575-1575043694:122555..122700TCONS_00026557-exon-sc0000575-1575043694:122555..122700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000575supercontigsc0000575:120684..122700 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.09367	7.90566	5.35455	1.87092	10.4773	10.4391	19.1087	20.7353	20.7796	17.982	15.4004	11.4734	10.5588	10.4988	15.9203	18.5258	18.765	15.3348	4.30899	7.51508	12.0841	7.16865	10.07	10.5636	24.6619	25.2469	18.9905	13.3467	10.123	12.2237
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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