|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026581 ID=TCONS_00026581|Name=TCONS_00026581|organism=Clytia hemisphaerica|type=transcript|length=1657bp
GCAAAGAAGTGTTGACATATGTTACagaaaatattggagaaaactGGTTC
CAGCTTTTAACTCTTCTATCGAAACGTCAAGGTGTGCCCATTGCTAATCC
ACAAGACACCAATGTTAAAAGTCCTTCGCAACAATTGATGGATCATTTTA
AAAGTCTagcttttcaaatcaaatggcAGGATTTGAAAAATGCATTAGAA
GCATTGGATTTGGGCGAAATGGTGGATCATATTGAGCAAAATACACTCAT
CACACAAgGTCTACAACTAGCATCGAATAAGCTTCGCCAGCGCTATGTGG
ACGATCTGATCCATTGGTTCCTTGATCAACCTCTCTCAACAACGAATGTT
GGAAACAAATCTTTATCAAGAGAAGAAGCTTACATCGACCTTGCCGTTAT
CTCCAGTGCTTCAGTGGATCGAGAATGGAGTAATTCAGATCGTCAAACCT
TAATGGAGCAGAGGTATTTGGAATTCGAGAGTATTGAAATACAGGATATT
GTGAAAGATACTGACCAATTAGTGGTAGTAAGGGGCGTGGCAGGTGTGGG
TAAGTCAAGCTATATTCAAATGCTAGCACTGAAATGGGCTAAACGCGAGA
TTATGAACACTTTCAACGACAAGATTGACTTTCTTTTTACCTTCACATGT
CGAGAAATCAACACTTTGCCAGATTTAAGCGGTATCGAGGATCTACTACG
AAAAACTTACCCGGAAATCTTCAAGTATGTAACCTTATCAGATCTTCAAA
TGCTCACAAACCGTATACTTTTAGTAGTTGACGGTTTGGATGAACTTAGT
GGAATGTACCAAGAAAACCCAACCGATCAAATGACCACCAGTGCGCGAGT
GACGATGCAGATCATAGATACTAAACATATTGATTTAAAAGGACATAAAA
CCATAGCTTGTGGTCGTCCTAATGCATGTGAAACAGTCCAAAAAGCATTT
TCAAAAACCCAACACACTAAGAGAGTTGAAGTATGCGGTTTTCGCAATGC
AATGATTAAAACTTATGTTCACTCTTTCTTTAAAAACGATACTGAGAGAT
CAGAGCAAGTATTGAAGGTCATCAAGAGATCTGGCAGCCTTCAAGCAATG
GCGAGTGTCCCCATCTTTTTATGGGTTATATGCTCAATCTACGCGGAAGA
CTGTGATGTCGAAATTCACAGCGTCACTGAGNTCTTTTTATGGGTTATAT
GCTCAATCTACGCGGAAGATTGTGATATCGAAATTCACAGCGTCACTGAA
CTCTACGTTTACGGTCTGTtagttttccttaaaaatcatCTCAAAGGTTG
CATggatatcaaaaataaaactttacaaGATATTGCTAACTCTCCTACCA
TTGGGGAAATCGTATACTCCCTTGCCAAACTGTCCACCAAAACCTACATG
AAGCACCAGGTCATCTTCACACAAGATGATATGGAATCTCTTAATTGCGC
AATCCAAATGCAGCAGACCGGATTTATCACAAAATTATCGATGGGAAATA
TTTATAAAGAATGGTACCAATTTAAACACTTGTCTTTTCAAGAATTTCTG
TCTGCCTTATACTTATGCCTTTCCAAAGGAAATACCGTTTTCAACCAAAA
ACGTGAACTGTCAAGTTGCAAACAAAGTATCATAGGAATTCACTATCTCT
CAACAGA Run BLAST on NCBI transcript from alignment at sc0000575:157160..160044- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026581 ID=TCONS_00026581|Name=TCONS_00026581|organism=Clytia hemisphaerica|type=transcript|length=2885bp|location=Sequence derived from alignment at sc0000575:157160..160044- (Clytia hemisphaerica)
GCAAAGAAGTGTTGACATATGTTACAGAAAATATTGGAGAAAACTGGTTC
CAGCTTTTAACTCTTCTATCGAAACGTCAAGGTGTGCCCATTGCTAATCC
ACAAGACACCAATGTTAAAAGTCCTTCGCAACAATTGATGGATCATTTTA
AAAGTCTAGCTTTTCAAATCAAATGGCAGGATTTGAAAAATGCATTAGAA
GCATTGGATTTGGGCGAAATGGTGGATCATATTGAGCAAAATACACTCAT
CACACAAGGTAAACACTTTTTTTGACACTTTAATTCCAACCGACAGAAAT
AGAAAATAAATAATGCTCAATCATCAAATTGACAACGAAACTGAAAAAAA
AATCTTACTTCGTTTCGTTGTCGAAAAAATTGACAACAAAACTAAAAAAT
TGACGACGAAACTGAATATAGATTGTTACTTCGTTTCGTCGTCGAAAAAA
ATCGACAACGAAACTAAAAAATATTTGAAAATGGTGGCTGTGATGGTTGG
GAAATGGCAAAATCATCAATTCTGATCGATTCTGAAGAGGGATTTGATAG
TTCTGGTAGATGCAATGCTGGTGAAGATGGTTCTTGTGAATAAGATGCTG
GCAATGATGAACCAGAATAGGGATGCAATGGTGGAGATTGTTTGAATAAC
CGGTGTCAATGGAATCATTGGAACTAATCAATAGTCCAATTGATTAAATC
AATGGAGCAAGTGATGGAATCAATGGTGCAAGTGATGGAATCAATGGTGC
AAATGATGGCATCAATGGTGCAAGTGATGGAATCAATGGTGCAAGTGATG
GAATCAATGGTGCAAATAATGGAATCAATGGGGCAAATGATGGAATCAAT
GGTGCAAGTGATGGTATCAATGGTGCAAGTGATGGAATCAATAGAGCAGA
CGGTGGAATCAATGGGGCAAATGATGGAATCAATGGTGCAAGTGATGGAA
TCAATAAAGCAGACGATGGAATCAATGGTGTAAGTGATGGAGTCAATGGA
GTAGATGATGGAATCAAAGCTGTGGCATGATGAGATGATGGAATCCATTG
TGTGGGTGATGGAACCAACCATTAGTTCTAATGATTCCATTGACACCCCT
GTGATTCCAAAAATCTCCAGTATTGCATCCTTATTCTGGTTCATCATTGC
CAGCATCTTATTCACAACAACCTTCTTCACCAGCATTGCATTTACCAGAA
CTATCAAATCCATCTTTAGAATCCATCATTTTCAATGATATTTCCATTTT
TCAACCACCACGCACCAGGGCCATCATTTTCAATTTTTTTTACTTTCGTT
CTTTCGTTGTCAATTTTTTCGACGACGAAACAAAGTAACAATTTATTTTC
AGTTTCTTCGTCAATTTTTTTAGTTTCGTCGTTAAAACACTGAAGGAAAA
TCTAAATGACACTAATGGGCTTTTATGTTTGAGAAAGCTAAAAAAATGAA
ACTTATAATCAAACTTCAAACATATATTTATTATAGGTCTACAACTAGCA
TCGAATAAGCTTCGCCAGCGCTATGTGGACGATCTGATCCATTGGTTCCT
TGATCAACCTCTCTCAACAACGAATGTTGGAAACAAATCTTTATCAAGAG
AAGAAGCTTACATCGACCTTGCCGTTATCTCCAGTGCTTCAGTGGATCGA
GAATGGAGTAATTCAGATCGTCAAACCTTAATGGAGCAGAGGTATTTGGA
ATTCGAGAGTATTGAAATACAGGATATTGTGAAAGATACTGACCAATTAG
TGGTAGTAAGGGGCGTGGCAGGTGTGGGTAAGTCAAGCTATATTCAAATG
CTAGCACTGAAATGGGCTAAACGCGAGATTATGAACACTTTCAACGACAA
GATTGACTTTCTTTTTACCTTCACATGTCGAGAAATCAACACTTTGCCAG
ATTTAAGCGGTATCGAGGATCTACTACGAAAAACTTACCCGGAAATCTTC
AAGTATGTAACCTTATCAGATCTTCAAATGCTCACAAACCGTATACTTTT
AGTAGTTGACGGTTTGGATGAACTTAGTGGAATGTACCAAGAAAACCCAA
CCGATCAAATGACCACCAGTGCGCGAGTGACGATGCAGATCATAGATACT
AAACATATTGATTTAAAAGGACATAAAACCATAGCTTGTGGTCGTCCTAA
TGCATGTGAAACAGTCCAAAAAGCATTTTCAAAAACCCAACACACTAAGA
GAGTTGAAGTATGCGGTTTTCGCAATGCAATGATTAAAACTTATGTTCAC
TCTTTCTTTAAAAACGATACTGAGAGATCAGAGCAAGTATTGAAGGTCAT
CAAGAGATCTGGCAGCCTTCAAGCAATGGCGAGTGTCCCCATCTTTTTAT
GGGTTATATGCTCAATCTACGCGGAAGACTGTGATGTCGAAATTCACAGC
GTCACTGAGNTCTTTTTATGGGTTATATGCTCAATCTACGCGGAAGATTG
TGATATCGAAATTCACAGCGTCACTGAACTCTACGTTTACGGTCTGTTAG
TTTTCCTTAAAAATCATCTCAAAGGTTGCATGGATATCAAAAATAAAACT
TTACAAGATATTGCTAACTCTCCTACCATTGGGGAAATCGTATACTCCCT
TGCCAAACTGTCCACCAAAACCTACATGAAGCACCAGGTCATCTTCACAC
AAGATGATATGGAATCTCTTAATTGCGCAATCCAAATGCAGCAGACCGGA
TTTATCACAAAATTATCGATGGGAAATATTTATAAAGAATGGTACCAATT
TAAACACTTGTCTTTTCAAGAATTTCTGTCTGCCTTATACTTATGCCTTT
CCAAAGGAAATACCGTTTTCAACCAAAAACGTGAACTGTCAAGTTGCAAA
CAAAGTATCATAGGAATTCACTATCTCTCAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026581-exon-sc0000575-1575043694:159787..160044 | TCONS_00026581-exon-sc0000575-1575043694:159787..160044 | Clytia hemisphaerica | exon |
| TCONS_00026581-exon-sc0000575-1575043694:157160..158558 | TCONS_00026581-exon-sc0000575-1575043694:157160..158558 | Clytia hemisphaerica | exon |
| TCONS_00026581-exon-sc0000575-1510915933:159787..160044 | TCONS_00026581-exon-sc0000575-1510915933:159787..160044 | Clytia hemisphaerica | exon |
| TCONS_00026581-exon-sc0000575-1510915933:157160..158558 | TCONS_00026581-exon-sc0000575-1510915933:157160..158558 | Clytia hemisphaerica | exon |
| TCONS_00026581-exon-sc0000575-1491911889:159787..160044 | TCONS_00026581-exon-sc0000575-1491911889:159787..160044 | Clytia hemisphaerica | exon |
| TCONS_00026581-exon-sc0000575-1491911889:157160..158558 | TCONS_00026581-exon-sc0000575-1491911889:157160..158558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000575 | supercontig | sc0000575:157160..160044 - |
Blast
BLAST of TCONS_00026581 vs. Swiss-Prot (Human)
Match: NAL12 (NACHT, LRR and PYD domains-containing protein 12 OS=Homo sapiens GN=NLRP12 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 7.964e-22 Identity = 89/363 (24.52%), Postives = 153/363 (42.15%), Query Frame = 3
Query: 522 VVVRGVAGVGKSSYIQMLALKWAKREIMNTFNDKIDFLFTFTCREINTLPDLSGIEDLLRKTYPEIFKYVTLSDLQMLTNRILLVVDGLDELSGMYQ--ENPTDQMTTSARVTMQIIDT--KHIDLKGHKTIACGRPNACETVQKAFSKTQHTKRVEVCGFRNAMIKTYVHSFFKNDTERSEQVLKVIKRSGSLQAMASVPIFLWVICSIYAEDCDVEIHSVTEXFLWVICSIYAEDCDIEIHSVTELYVYGLLVFLKNHLKGCMDIKNKTLQDIANSPTIGEIVYSLAKLSTKTYMKHQVIFTQDDMESLNCAIQMQQTGFITKLSMGNIYKE------WYQFKHLSFQEFLSALYLCLSKG 1580
VV++G AG+GKS + L WA ++ F + D+LF CRE+N ++DL+ +PE L +L + R+L ++DG DEL + + P R T ++++ + L + RP A E + + +H + VE+ GF A K Y + +F N E++ QV ++ + L M VP+ WV+C+ + +E + + T +Y+ LL ++ LQ N L L+ +++F + D+ + L+M NI+++ +Y F HLSFQEF +A+Y L +G
Sbjct: 213 VVMQGAAGIGKSMLAHKVMLDWADGKL---FQGRFDYLFYINCREMNQSATECSMQDLIFSCWPE--PSAPLQELIRVPERLLFIIDGFDELKPSFHDPQGPWCLCWEEKRPTELLLNSLIRKKLLPELSLLITTRPTALEKLHRLL---EHPRHVEILGFSEAERKEYFYKYFHN-AEQAGQVFNYVRDNEPLFTMCFVPLVCWVVCTCLQQ--QLEGGGLLRQ---------------TSRTTTAVYMLYLLSLMQP------KPGAPRLQPPPNQ-------RGLCSLAADGLWNQKILFEEQDLRKHG----LDGEDVSAFLNM-NIFQKDINCERYYSFIHLSFQEFFAAMYYILDEG 531
The following BLAST results are available for this feature:
|
