|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026583 ID=TCONS_00026583|Name=TCONS_00026583|organism=Clytia hemisphaerica|type=transcript|length=1511bp
gAGTGGGTGAAGTAAGAACATGTTTTGAATGTAAAATGAAAGTTTGGGCG
TTTTGAGATTtcaacagtttttgaaaaacttgaaacCATTTTTAGCCTGA
AGAATGGAgagaaaattttcgaagaaGGCCATGTTGTGATCAATTTTAAC
GGATGTCAACATACAAATCAATCAACCAAGTGATACAAGAAGTCCAACAT
TGGCTTCGATTGGCTGTTTTCGAACATGGACCTCTCAAAGAATCACTCTT
GTACGTGTTTCATAACAAAGGGAACGATTCATCTTATATAGGTTTGCCTA
GCAACCCGACAGACCTCTACAATGAGTTATCTACAAAACATCGAAGAAAA
ATTGCGGATTTGGTCAAGAAAGGAGTCCTCAAGAAAGACCAGCACGAACT
GCTGTTACCAACAGATGGCAGTAACAAAACATTCTCTGATAAATTCGATA
TCACCCTTATCGTACTCGCAATCCGGAGTTTTACTTCATTGCCACCGCCA
AAGGGTGGTTGGAATATGACTCCCGCCCCAACAGATATCACACTAAACGC
GAATACAATCCGTGCTAGAGATTGGAGGAATTTTTTAAACCATACGNGAT
ATCACACCAACCGCAAATACAATCCGTGCTCGAGATTGGAGGAACTTTTT
AAACCACACCAATCCAGAAGATGTTGATTTGGctcttttcaatcaaaaat
ggAATGAAGGTGTTCAGATTGTCCAACAGATTGGATACGCACCACCAGAT
CTGAACACTTTGAGAACAATCTCATTGGATCCTAAACATGATCTTGTTTT
GAGATCATTACACTCTTTAATCAATAACGTCGTCTTATCAcaacagaaaa
atcaaagtgaTATCAAAGCTCTTCAAAAGGAAGTTAGTGACCATACAGCT
GCCAATAATTTGATGAGGACCGAAATCAACAAAAATGTGGCAGATGTAGA
GATGCTGAATAAACGTTTTGCGGGGCAGAGGGAGGATATTGCAAAATGCT
TAGAAGAGGATTCAACCAAACGGTTGGAAGATCAGGTGAACATCACAAAA
CGTTTGGAAGAGGAGTCAACCAAACGGTTGGAAGATCAGGTGAACATCAC
AAAATGTTTGGAAGAGGAGTCAACCAAACGGTTGGAAGATCGGAAAGAGA
TCACAAAACGTTTGGAAGAGGAGTCAAAAAAAAGATTGGAAGATCGGAAA
GAGATCACAAAACGTTTGGAAGAGGAGTCAAAAAAAAGATTGGAAGATCG
GAAAGAGATCACAAAACGTTTGGAAGAGGAGTCAAAAAAAAGATTGGAAG
ATCGGAAAGAGATCACAAAACGTTTGGAAGAGGAGTCAAAAAAAAGATTG
GAAGATCGGAAAGAGATCACAAAACGTTTGGAAGATCAAGCAGAACTATT
GGACGATCGTACAGAACTATTGGTTGACCAAATACAAACAATCACTAGGA
AAGTTGAACTTCTAAACGAACTCAAGAATGAAGAACAGAAAATCCAAAAC
GACGATTTATC Run BLAST on NCBI protein sequence of TCONS_00026583-protein >TCONS_00026583-protein ID=TCONS_00026583-protein|Name=TCONS_00026583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MRTEINKNVADVEMLNKRFAGQREDIAKCLEEDSTKRLEDQVNITKRLEE
ESTKRLEDQVNITKCLEEESTKRLEDRKEITKRLEEESKKRLEDRKEITK
RLEEESKKRLEDRKEITKRLEEESKKRLEDRKEITKRLEEESKKRLEDRK
EITKRLEDQAELLDDRTELLVDQIQTITRKVELLNELKNEEQKIQNDDL Run BLAST on NCBI transcript from alignment at sc0000575:160210..166493- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026583 ID=TCONS_00026583|Name=TCONS_00026583|organism=Clytia hemisphaerica|type=transcript|length=6284bp|location=Sequence derived from alignment at sc0000575:160210..166493- (Clytia hemisphaerica)
GAGTGGGTGAAGTAAGAACATGTTTTGAATGTAAAATGAAAGTTTGGGCG
TTTTGAGATTTCAACAGTTTTTGAAAAACTTGAAACCATTTTTAGCCTGA
AGAATGGAGAGAAAATTTTCGAAGAAGGCCATGTTGTGATCAATTTTAAC
GGTAGGTTATTTATTGTGATTAGTACTTAAAAAAACCTTTATTTACACGG
ATGACCCAATAGAGGCCTCAGAGTCCTTATCAAGAAAAAGATATAACCAT
GTGTAGTCCCGTGTTTTCCGAAATTCAGGGTAAAAAGGTTTAAATTTAAA
AATACTGCTTTTTTCTTGTTTTTTTTGGCCATTTTGCCAAAATTCCGAAA
TTTAAGAATGATATCTCCTTTGGAAGAAATTACAAAGTGAAACTAACCCA
AAATCTCGTACGCCCCCTCCACTTTGTTAGGCACTGCAGACACTCATACC
CGGGGGGCACTCATACTAAAAAGCACTAAAGTATTTTTAGGCCATTTAGC
CATTCAAGAAGCTGAAATAAAAGTTTTATTAAAGTTCCCTTGAGCCATTC
TACTGTTTTTTAATCAACTACTTTGTCTTCCTAAATCAATTTGCATTCTA
ATTCCCAGAATGCAGTCAAGTATGCTTTGCTGACTTAATAATTGCCTTTC
AAATTGTTTTCTTATCTTATTGTTTTTCTTTGCTTGCCAAAAAAATAGCC
ATTTTGACTAATGCTAGAATTTCATTTTTAGTATAGCGATACTTTGAACA
TCAGCTATATAATTTCATTAAGTAGTAATCTTCAGGTTCAAAAAATTTTG
AAATGATTTCTCTCAAAAGTTATAGTGCTTTAAAATATGCATCGAGAGAT
TTTGAGAGCAATTTGAAAATGTCACTGGTCGCTTGATATAGGTCCATTTT
GGCAACCTCTAAAAAGCTCAGAAAAAAGTGTAAAATTGACCATACCCTGA
CCATATATTAAAAAAAACCATAAAAAATGGCTATGCCAAGTTTTATCTTC
TTTTTTTTCATTTTTGGCACTTTCACAAATACCTTTTTCTTTTCTTCGAT
GAGTGAGGCCTGGAAAACCCGAGTTATGAAATGACGTCACAACTCAGTTT
TTAGGTGCACCTTAATCCTTCGAGCATCTTCCTATTTTTTACTACAATCA
TAGACAAAATATTTGAGACAAAGGGGATTTCCCGGTGAAAATCTAAACAC
CACATATGATTTTTAAGCGCCTAAAACTACAGTTGGAAAGTAGAGTTTTA
ACTCTGAGTTTTAACATGAGACTTAAGACTTAGAACCTTAGGATTTCAGG
ATTTTAAAAGCTAAAATTTGCTCCAATAAGGCTTGGAATATAGTTTAGAA
GCCATCGAACCCCTCCAAAATCGAAATAATCAACGAAAGAAAGTGGAAGT
GCTAAAATAGCAATTCTCGCCCGAACTTTAAATTCTGAAAAACTTTAAAA
TAAACTAAAATCTCATTATGTGTCGACCATGATTGTATGAGAAGAATCTT
GGAGGGGGGGGGATATGGATGATTCGGACACCTGTCTGGTTTGTATTTCA
CAGACCAGAATGTAAACTTGACCAAAATCATGTATTGACTAATTGACTCG
TTCGATTTGACTGAAATTTGTTCCTTAAGCCTGATTTGTCAAATAAAAGA
GACTGGTAACAGAAAAAATCCTCAGGAACTAATCAAGCTTTTGACTTGAA
ATTCTTACAGGTGATATTTATTGACCTTCTTAGCCAGTGTGCTAAATTTA
AATTTAGTCATGTTAGTACGGTCTAGTTGTGCAAATATTGTGCACAAAGG
CGTAAAAGCATGAAACTTTGCACAATGGTAGTTTAGGGGTTAAAAATGGA
TTTAAATCTCAGACCCAAAAAATTGACACCTGTTTGTGTATTTTACAGAC
CAGAATAGGTTTCCAGACTAAAATGAAAATTCTTTTCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAA
CAGGTGCCAATTTTTTGGGTCTGAGATTTAAATCCATTTTTGACCCCTAA
ACTACCATTGTGCAAAGTTTCATGCTTTTACGCCCTTGTGCACAATGTCT
ATGACTTTTGGCACATTTAGACTGCACTATGTGAGCAGTTAGTATTTTAA
AGACCGGTCCGTTTTTTGCTGAAATTTGACTGCAAGCTTGTATTATCAAT
ATCTAATACTTGTCAAAATTTTAAGCCAATAGCAATTCCAATCAGCTGTT
TAGGCAAAAAAAAGGTAATTTTAGGCTGGTCTGTAAAATACACAATACCA
ACAGCCGGCAAAAAATGACTATGCCCCAAAAATAGACGTCACGAAGAATT
GGGGGGGGGGGGGGCTCCCCCCGGTTGCTCGAAGGGTTAAATTTTGAAGT
TTCCTAACTCGGATTTTTAAAGCATGAAGAATGACCTCCGTCTAGCATTA
TCTCGAGTTAAAATCACTGACGGGCATTTTTATAATTATTCTTTAGATAA
ACTAGAATACAAATTACAAAGTAAATAAGAATACCCTGAGTATCAGAGGT
TAAGTTTTCAAAGAATATATTAACCTCTGAAGACCAATAATATAAATTTT
ATCGCGCATGTGTCGATCTAATCACTGTAGAAAAAATCAAAGATGAAGAG
CAAATATTACCATATTAATGTCTAGCAGACTGTATCAGTATGCAGTTTAC
TATTCACGAATTTCCCAGAAACCTCCAAGTGTAATTGAAATGAGTTTCTT
TCAAAAGAAATCTTTTAAATGATCCCTAATATATAACAGTAATTACTAAA
CTTTTAATTATGGAAATGTCACTTTAATTGAATCGAAATAATAGACAGAC
TTTATGTTATGATTCTCTATCACTGACTCTTTTTACAAAGCATTGATGAC
TTTTTTAGGTTGTGTTTTCAACGACGGGAATAAAAATATCAACTTTGAAC
TTCATCCAAGATCTTGGATGGTCGTCATGATTACTTTTGTCATCGTTGAT
TGCGCGCTGAACAGATTCTTGATTCGTCGGCACAGCGTCAATATGATTTT
GACCTGTGCTTTTCACGGTACAGCACCTGACCCCGAGAATGTAGTAAACG
ACGAGAATTTCTAGACATAAAATTTTAACTGGAATTAATTTTTTTCAGCG
AAAATCTGAATCGAAGTTGATTTGATACTACCCGAATTGAGACATTTTAA
AAATAAATCCTCTCTAAATCCAAATCTATTGGAATTAAGTTATGATGATA
GGGTATTTCTTATTCCTAATGAACTAAGGAAAAAGGGAAAATAGTCAATT
TCAATATTTATTGTTCTAAATTAGATATTTTGAAGAAAATGTTTGACCTA
CTTTTTGGGGTTAGTTGACCTACAATTTGGGGGCCTTCATAAACCGACAT
AAAAAGTCTGTCAAATTATATACAGATTGTTTGTTGTACTTTCATAACAT
GAAAGTATGACGTAAGAGATGATTAATGTTGACATTTTGAGCTGTTACGA
TGTGTCCCAGACCCGCTGGGACCCCAGCCCAATCAAAAAATTTGCCTAAG
TTTGGAACTATAGAATTTCTATCCCCATTGGGACTTTAGTAGACATCTTT
GGACCTGATGTGGGAAAAAACTTCCACCGGGGCTGTGAGGCAGGGGTGTT
GTTACATTATTCACATAATTTGAACACAAAATTTTCAACCTATAAATTAA
AAACAACTTTTTTGTCTCTTCTTTTCGTCCTTTCTTTTACTTTTCATCAT
TAATAGCACGATAAAATTAACATCTTTGTTAAATTTTTGCCAGAGTAAAT
TTCTAAAGTATAAATTTCACACAGAGAACAATAATTTCCGATAAATACTG
AAATTCTGCTCTCGACAACCAAATCTTTTCACCTACATTCTGGGGGTTAA
AAAGCAAAAAAATCCAATTTTCAGAACAACAAAATGCTCTTTAGAAAATT
GTTTTGGCATAAAATATTTCTAAAATTTTCTGTTATAATTAATCCAATTG
AAAAAATATCAACATTTTACTAATACTAGATTTAAAGCCATAAAACCAAA
CCTACATTCTGGGGGTTATAACTTAAATGAGAGTCAACTTTAAAGACCAA
ATAAATTAGCCTATCTATCAAAAGTAATGAAACTAACCCCTGGGAAAGGA
TTTTGGGGGTTCAAAATTTCGTTGAAAACATTCAATATTTTTTTAAATGC
AAATCTGCATCTTTCAGGTCTGATTCAAATTTCACGTACATTCTCGGGGT
CAGGTGCTGTACATTATAGTATAGACGCTTTACAATATATTGTCAGCACT
TTGTAGTCCTTAATACTTTAAAAGTATTTGATACGTTTGGCGCACGTACT
ATATCCATCTTTCAGGTTAAAAAGAAAGGTGAACAACTCTAATTTTTCCA
TTCTCGTTCTTTTTTCACATAAAGGATGTCAACATACAAATCAATCAACC
AAGTGATACAAGAAGTCCAACATTGGCTTCGATTGGCTGTTTTCGAACAT
GGACCTCTCAAAGAATCACTCTTGTACGTGTTTCATAACAAAGGGAACGA
TTCATCTTATATAGGTTTGCCTAGCAACCCGACAGACCTCTACAATGAGT
TATCTACAAAACATCGAAGAAAAATTGCGGATTTGGTCAAGAAAGGAGTC
CTCAAGAAAGACCAGCACGAACTGCTGTTACCAACAGATGGCAGTAACAA
AACATTCTCTGATAAATTCGATATCACCCTTATCGTACTCGCAATCCGGA
GTTTTACTTCATTGCCACCGCCAAAGGGTGGTTGGAATATGACTCCCGCC
CCAACAGATATCACACTAAACGCGAATACAATCCGTGCTAGAGATTGGAG
GAATTTTTTAAACCATACGNGATATCACACCAACCGCAAATACAATCCGT
GCTCGAGATTGGAGGAACTTTTTAAACCACACCAATCCAGAAGATGTTGA
TTTGGCTCTTTTCAATCAAAAATGGAATGAAGGTGTTCAGATTGTCCAAC
AGATTGGATACGCACCACCAGATCTGAACACTTTGAGAACAATCTCATTG
GATCCTAAACATGATCTTGTTTTGAGATCATTACACTCTTTAATCAATAA
CGTCGTCTTATCACAACAGAAAAATCAAAGTGATATCAAAGCTCTTCAAA
AGGAAGTTAGTGACCATACAGCTGCCAATAATTTGATGAGGACCGAAATC
AACAAAAATGTGGCAGATGTAGAGATGCTGAATAAACGTTTTGCGGGGCA
GAGGGAGGATATTGCAAAATGCTTAGAAGAGGATTCAACCAAACGGTTGG
AAGATCAGGTGAACATCACAAAACGTTTGGAAGAGGAGTCAACCAAACGG
TTGGAAGATCAGGTGAACATCACAAAATGTTTGGAAGAGGAGTCAACCAA
ACGGTTGGAAGATCGGAAAGAGATCACAAAACGTTTGGAAGAGGAGTCAA
AAAAAAGATTGGAAGATCGGAAAGAGATCACAAAACGTTTGGAAGAGGAG
TCAAAAAAAAGATTGGAAGATCGGAAAGAGATCACAAAACGTTTGGAAGA
GGAGTCAAAAAAAAGATTGGAAGATCGGAAAGAGATCACAAAACGTTTGG
AAGAGGAGTCAAAAAAAAGATTGGAAGATCGGAAAGAGATCACAAAACGT
TTGGAAGATCAAGCAGAACTATTGGACGATCGTACAGAACTATTGGTTGA
CCAAATACAAACAATCACTAGGAAAGTTGAACTTCTAAACGAACTCAAGA
ATGAAGAACAGAAAATCCAAAACGACGATTTATC Coding sequence (CDS) from alignment at sc0000575:160210..166493- >TCONS_00026583 ID=TCONS_00026583|Name=TCONS_00026583|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0000575:160210..166493- (Clytia hemisphaerica)
ATGAGGACCGAAATCAACAAAAATGTGGCAGATGTAGAGATGCTGAATAA
ACGTTTTGCGGGGCAGAGGGAGGATATTGCAAAATGCTTAGAAGAGGATT
CAACCAAACGGTTGGAAGATCAGGTGAACATCACAAAACGTTTGGAAGAG
GAGTCAACCAAACGGTTGGAAGATCAGGTGAACATCACAAAATGTTTGGA
AGAGGAGTCAACCAAACGGTTGGAAGATCGGAAAGAGATCACAAAACGTT
TGGAAGAGGAGTCAAAAAAAAGATTGGAAGATCGGAAAGAGATCACAAAA
CGTTTGGAAGAGGAGTCAAAAAAAAGATTGGAAGATCGGAAAGAGATCAC
AAAACGTTTGGAAGAGGAGTCAAAAAAAAGATTGGAAGATCGGAAAGAGA
TCACAAAACGTTTGGAAGAGGAGTCAAAAAAAAGATTGGAAGATCGGAAA
GAGATCACAAAACGTTTGGAAGATCAAGCAGAACTATTGGACGATCGTAC
AGAACTATTGGTTGACCAAATACAAACAATCACTAGGAAAGTTGAACTTC
TAAACGAACTCAAGAATGAAGAACAGAAAATCCAAAACGACGATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026583-exon-sc0000575-1575043694:166343..166493 | TCONS_00026583-exon-sc0000575-1575043694:166343..166493 | Clytia hemisphaerica | exon |
| TCONS_00026583-exon-sc0000575-1575043694:160210..161569 | TCONS_00026583-exon-sc0000575-1575043694:160210..161569 | Clytia hemisphaerica | exon |
| TCONS_00026583-exon-sc0000575-1510915933:166343..166493 | TCONS_00026583-exon-sc0000575-1510915933:166343..166493 | Clytia hemisphaerica | exon |
| TCONS_00026583-exon-sc0000575-1510915933:160210..161569 | TCONS_00026583-exon-sc0000575-1510915933:160210..161569 | Clytia hemisphaerica | exon |
| TCONS_00026583-exon-sc0000575-1491911889:166343..166493 | TCONS_00026583-exon-sc0000575-1491911889:166343..166493 | Clytia hemisphaerica | exon |
| TCONS_00026583-exon-sc0000575-1491911889:160210..161569 | TCONS_00026583-exon-sc0000575-1491911889:160210..161569 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000575 | supercontig | sc0000575:160210..166493 - |
Blast
The following BLAST results are available for this feature:
|
