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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026638 ID=TCONS_00026638|Name=TCONS_00026638|organism=Clytia hemisphaerica|type=transcript|length=2108bpRun BLAST on NCBI protein sequence of TCONS_00026638-protein >TCONS_00026638-protein ID=TCONS_00026638-protein|Name=TCONS_00026638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp MTISLEDVAQLHSDGLLSNINSLVSLMLSTNELSNPTSIEDQNATVKKYQRun BLAST on NCBI transcript from alignment at sc0000580:37545..67862- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026638 ID=TCONS_00026638|Name=TCONS_00026638|organism=Clytia hemisphaerica|type=transcript|length=30318bp|location=Sequence derived from alignment at sc0000580:37545..67862- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000580:37545..67862- >TCONS_00026638 ID=TCONS_00026638|Name=TCONS_00026638|organism=Clytia hemisphaerica|type=CDS|length=35091bp|location=Sequence derived from alignment at sc0000580:37545..67862- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026638 vs. Swiss-Prot (Human)
Match: APC7 (Anaphase-promoting complex subunit 7 OS=Homo sapiens GN=ANAPC7 PE=1 SV=4) HSP 1 Score: 342.428 bits (877), Expect = 2.335e-107 Identity = 203/531 (38.23%), Postives = 310/531 (58.38%), Query Frame = 2
Query: 248 KKYQMMVYYADSLYEDDCFKRAERYYT----DXXXXXXXXXXXXXXXTTSSKPTSTGLTSEVEIKYKIFKCQTKLDNHKESLNTLESIVPKQRTPKVNMALGRLYQKHGMERSALTCYKEVLRASPLALEAVECLLKLGVSLQEVISLMTTTKTKMP--DWLLQYVKGFSFSAVCKYSKAIQVYKSLESQHL-KENINLLSKLGESYYRIGEKQTASTHFSKLRALDKTNLRGMDIYAHILADQGQKAELEILAQELSDVTQIKTEPWVAMSYYCSCANQKARAIYFAQKAHTTDTSNVEXXXXXXXXXXXXNKHQESIIHFREAIRLAPNQLECYEGLVECHTSLKRNKEAMNIARNAHKTIGPNARTLALCAKVYSTDANLQEKAKAMLKKALTHDPSYLPAVYQLVELFMKGDEFQGASELLSKQLESQQTSTLHQLYADCLKETGNTSESMDQYNKALRLDPENMKALEGLQFLERDANSELEMSSIQDIRN-RSSMEGLDALGSDQDNNTWMD*DCCS*KASNEWF 1816
+KYQ++VY+ADSL+ D ++ A YT L K S + ++S P S L SE+E+KYK+ +C T L K+++ L+ I +QRTPK+NM L LY+K G ER ++T YKEVLR PLAL+A+ LL L V EV S+ +P DWL ++K ++F S+AI SLE + L ++N++LL L + Y+R G+ + + F + + LD ++GMD+Y ++LA +G+ ++E L L +++ EPWV + + + +RA+Y KA ++++V+AL LK + L+++ + QE+IIHFREAIRLAP +L+CYEGL+EC+ + +EAM +A N +KT+G NA+TL L A V D QEKAK +L KALT P Y+ AV + EL + +++ LL L +Q LH++ D L E+MDQY+ AL LDP + K+LEG+Q +E++ S + + +D+ + S E D GSD + W D +WF
Sbjct: 75 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTVPNLDWLSVWIKAYAFVHTGDNSRAISTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKE-ESPTDATQEEDVDDMEGSGEEGDLEGSDSEAAQWAD--------QEQWF 596 The following BLAST results are available for this feature:
BLAST of TCONS_00026638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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