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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026640 ID=TCONS_00026640|Name=TCONS_00026640|organism=Clytia hemisphaerica|type=transcript|length=1105bp
GTTTTGAGTATAATTAACATTGAATCTAGCACCAAAGTAATTTTTAacta
ttcaaatatatattcttGAATCCATAGCAAAACTAGATTTTCGTGCAAAA
AACTGCAACATTGATAtacaaaacacaacaaaaatttttaaaggtaGTCA
ATCAACTTTAATGAAACCGTGTAGCCatatctttataaagttttaacCAA
GCATTTTTCCCACCAATATCATTAAATAGAGAAGCATCTGCATTTTTTAT
ACCTCTCCTAAAAGCATATTCAATACAGTCAGTAACTTTCTGTTCAGCTT
CATTCATCTCATCCCCAGAGTATTGGCAAGATGTACCATAAACATGCTCT
GCCATTCCACGCAAGGGCATACCTACACCAAAACCCCATTTCTCTGTAGC
ATCACTTTTCTCAAAAGCAAATCCTAAATTTTCTTCGCCAACTCGTAAAC
ATTTCTCAAAGTTGAATCCAGTAGCAGGAATGACACCATTTTGAACAGcc
aatttcataaaaaccatAAAATCTTTAATAATATGTTGTTTTCGAGCATT
GGTTCCTAGATCCTGAATTTGAACATCATATAAACCGTGTAAATTGCCAC
CACCCCAAACATAGTCACCATTTTGAACAGccaatttcataaaaaccatA
AAATCTTTAATAATATGTTGTTTTCGAGCATTGGTTCCTAGATCCTGAAT
TTGAACATCATATAAACCATGTAAATTGCCACCACCCCAAACATAGTCAT
CATCTAGTCTTAATCGATAAGCATCAATGAGCCATTCATACTTTTTATCC
CCTTCAGAACTTTCAAACCAAGCTGTTTTGTTTCTTATTAAATCAAACAT
TGAAACACCTCCTTGACAGTGTTGTTGGGATTGGTCTTGCTTTTTCCCAC
ATGACTTTTTATGAGCTTTCCAGTCAGCTACTTGGCAATCTTTAGAGCAA
TAGTTCTTGTTCTTACATCTGCTGCATCTTTGCTCAGCTTCTTTGGTACA
ATTATTTACTCCGCAAGTAACCATCTCCAATACagtactgaaaatgaaaa
ctccctaaaaagtaaaaaaaaaattgaaagcagGAATGACACCATTTTAA
ACAGC Run BLAST on NCBI transcript from alignment at sc0000580:105379..107793- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026640 ID=TCONS_00026640|Name=TCONS_00026640|organism=Clytia hemisphaerica|type=transcript|length=2415bp|location=Sequence derived from alignment at sc0000580:105379..107793- (Clytia hemisphaerica)
GTTTTGAGTATAATTAACATTGAATCTAGCACCAAAGTAATTTTTAACTA
TTCAAATATATATTCTTGAATCCATAGCAAAACTAGATTTTCGTGCAAAA
AACTGCAACATTGATATACAAAACACAACAAAAATTTTTAAAGGTAGTCA
ATCAACTTTAATGAAACCGTGTAGCCATATCTTTATAAAGTTTTAACCAA
GCATTTTTCCCACCAATATCATTAAATAGAGAAGCATCTGCATTTTTTAT
ACCTCTCCTAAAAGCATATTCAATACAGTCAGTAACTTTCTGTTCAGCTT
CATTCATCTCATCCCCAGAGTATTGGCAAGATGTACCATAAACATGCTCT
GCCATTCCACGCAAGGGCATACCTACACCAAAACCCCATTTCTCTGTAGC
ATCACTTTTCTCAAAAGCAAATCCTAAATTTTCTTCGCCAACTCGTAAAC
ATTTCTCAAAGTTGAATCCAGTAGCAGGAATGACACCATTTTGAACAGCC
AATTTCATAAAAACCATAAAATCTTTAATAATATGTTGTTTTCGAGCATT
GGTTCCTAGATCCTGAATTTGAACATCATATAAACCGTGTAAATTGCCAC
CACCCCAAACATAGTCATCATCTAGTCTTAATCGATAAGCATCAATGAGC
CATTCATACTTTTTATCCCCTTCAGAACTTTCAAACCAAGCTGTTTTGTT
TCTTAGTAAATCAAACATTGAAACACCTCCTTGANCTTTAACCGTAGCCG
TAGAGAATTCCAGACACATAATCTCGCTATTATCAACGACAGTCAACGAA
AATATATACAATGCATACCTTGAGTGTACGTCAAACATATATGCTTTTAA
ACCATTTCAGATAAAACCATAGTTGTTTTCATTTCTTTTGTGATTTATGA
AGATTCTCGCATTTGAAGGCACAACCATGACATACTTTATCTTCTTTAGT
TAATAAATTTCTAAAACGAAAATGGAAAGTAATAAAAGCACTGTCTATTT
AACTTCTAATGTCATGAATTTTGTGTTCAAATATATGCAAATGGTTATTC
TATCTTTCTAGATATGGGTATCAAAGTATAAGAAAGCTGCGGCTGGATTG
TTTACTTATAGAACTCGGAAAAAGAGATAGAACATCAATAAGAACGTCAT
CTTTGCCAGTTTATTCTTGGTAGATAGTTTTTTGAATTTTTCTCTCATTT
TCCTTCGCAGATATCTTTGAATTTTGACCAAATAGAAAACTATTAACTAA
TATTGGACGTATTTTAGGGGTGTTTTGCGGAAATGATACTTTTAAGCAAA
AATTAAAATTATAAGAGCTAAATTCAAAATGAAAATTGGATAAGGAGGGA
AATCTTGTTTTATCTGAAATGGTTTAAAATGGTTTAAAAGCATACCAAAA
GGACGTACACTCAAGGTATGCATTTTATATGTTTTCGTTCTTGTTTTGAG
TATAATTAACATTGAATCTAGCACCAAAGTAATTTTTAACTATTCAAATA
TATATTCTTGAATCCATAGCAAAACTAGATTTTCGTGCAAAAAACTGCAA
CATTGATATACAAAACACAACAAAATTTTTTAAAGGTAGTCAATCAACTT
TAATGAAACCGTGTAGCCATATCTTTATAAAGTTTTAACCAAGCATTTTT
CCCACCAATATCATTAAATAGAGAAGCATCTGCATTTTTTATACCTCTCC
TAAAAGCATATTCAATACAGTCAGTAACTTTCTGTTCAGCTTCATTCATC
TCATCCCCAGAGTATTGGCAAGATGTACCATAAACATGCTCTGCCATTCC
ACGCAAGGGCATGCCTACACCAAAACCCCATTTCTCTGTAGCATCACTTT
TCTCAAAAGCAAATCCTAAATTTTCTTCGCCAACTCGTAAACATTTCTCA
AAGTTGAATCCAGTAGCAGGAATGACACCATTTTGAACAGCCAATTTCAT
AAAAACCATAAAATCTTTAATAATATGTTGTTTTCGAGCATTGGTTCCTA
GATCCTGAATTTGAACATCATATAAACCATGTAAATTGCCACCACCCCAA
ACATAGTCATCATCTAGTCTTAATCGATAAGCATCAATGAGCCATTCATA
CTTTTTATCCCCTTCAGAACTTTCAAACCAAGCTGTTTTGTTTCTTATTA
AATCAAACATTGAAACACCTCCTTGACAGTGTTGTTGGGATTGGTCTTGC
TTTTTCCCACATGACTTTTTATGAGCTTTCCAGTCAGCTACTTGGCAATC
TTTAGAGCAATAGTTCTTGTTCTTACATCTGCTGCATCTTTGCTCAGCTT
CTTTGGTACAATTATTTACTCCGCAAGTAACCATCTCCAATACAGTACTG
AAAATGAAAACTCCCTAAAAAGTAAAAAAAAAATTGAAAGCAGGAATGAC
ACCATTTTAAACAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026640-exon-sc0000580-1575043694:107178..107793 | TCONS_00026640-exon-sc0000580-1575043694:107178..107793 | Clytia hemisphaerica | exon |
| TCONS_00026640-exon-sc0000580-1575043694:105379..105867 | TCONS_00026640-exon-sc0000580-1575043694:105379..105867 | Clytia hemisphaerica | exon |
| TCONS_00026640-exon-sc0000580-1510915933:107178..107793 | TCONS_00026640-exon-sc0000580-1510915933:107178..107793 | Clytia hemisphaerica | exon |
| TCONS_00026640-exon-sc0000580-1510915933:105379..105867 | TCONS_00026640-exon-sc0000580-1510915933:105379..105867 | Clytia hemisphaerica | exon |
| TCONS_00026640-exon-sc0000580-1491911889:107178..107793 | TCONS_00026640-exon-sc0000580-1491911889:107178..107793 | Clytia hemisphaerica | exon |
| TCONS_00026640-exon-sc0000580-1491911889:105379..105867 | TCONS_00026640-exon-sc0000580-1491911889:105379..105867 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000580 | supercontig | sc0000580:105379..107793 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
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