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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026645 ID=TCONS_00026645|Name=TCONS_00026645|organism=Clytia hemisphaerica|type=transcript|length=1265bp
CGATCATGATGGATTTcagtattacttttcactttataCTGAAACATGGT
ACAGTGCAAAggatttttgtcgaaaatttgaTGGTTTTCTTGCCAGTATC
CATAAGAAAGAAGAAAGTATATTCATCACACAAGAATTAATCAAAAGaaa
aattggaACCGCCTTTATTGGAGGTACTGACGAACCGCATGAAGGGAAAT
GGGTGTGGTTAGATGGCACACCTTGGTCTTTTGAGGCCTGGGCCGGAATA
GAACCAAACAATAACAAAGGAGCTGAACATTGTCTTGCAGTAACTAACAG
ACATGAAATATATAATTGGGATGATATACTATGCAATCAAAATGGATATT
TCATCTGCAaattcaaagattttaaagGTGATGGTTATATCATGGAAAGC
CAATTACACCAACGGCTCTCTTACCCAATACAAATGAACGGCTGGAATAA
AACGTTTGGTAAAATACCGTTAGTTGAATGTTATGATAAATGTTTCGAAG
ATCGATGCAAAATGCTTTACCATACAACCTTAAAGAAATGcacgattttt
gaaaagaagtttTTGGACAACGAGTTGTTGGAATCACCTTACAAGGAAAA
TGATCCCGAAGAGATTGTTTTTATCTATTGGCTGAAGCCCTGAACTCACC
GAGAGACCCTAAACTCACCAAGAGGCCCTTGACTCGCCAAGAGGCTCTGA
ATTCAACAATATTATCGATCAATTACATTTGGGTGCAGTTCCAACAAAGA
AAACGCTTGGTCTAAGCGATAGGAGTAAATCACTCAAAAAATTCTCTTAC
GCCgttccaaaaaagttaagaaaaagtcatcaaaaaagtcaataaaaagt
aaaaaaaagtctggAAAAGTTCCATCCATCTCTTGAGTCAGTGGTTGGGT
GGAGGGATATAGGGCGGTAATCGTTTTTGAGCCTTGTTGGGCGGATTATT
AAAGTGCTTGAGGCAGTTGGTATCTTTTTTGAGTAGTTTACATAGGAAGG
ATTTCATTAAATGATGACGTGAAGTTTGGATCCAATGAAAGGGTCTCCTG
CTGAAAGGTCGGGTGGAAAAAGTACGTTCTACGGCAAATCATTTTTGTGA
CTttgtttataatatttttatttagtcgcataaagtttttattttaagcA
TTATTTAAGGTCATTTTGTAAGTGCACGCTTTTTTTGTAATGATATAAGT
ACTCtccaaaaatatttataatgaaATTTATGATAGTTGAAGTAGTGAAA
ATTATTGTATCAATA Run BLAST on NCBI protein sequence of TCONS_00026645-protein >TCONS_00026645-protein ID=TCONS_00026645-protein|Name=TCONS_00026645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
DHDGFQYYFSLYTETWYSAKDFCRKFDGFLASIHKKEESIFITQELIKRK
IGTAFIGGTDEPHEGKWVWLDGTPWSFEAWAGIEPNNNKGAEHCLAVTNR
HEIYNWDDILCNQNGYFICKFKDFKGDGYIMESQLHQRLSYPIQMNGWNK
TFGKIPLVECYDKCFEDRCKMLYHTTLKKCTIFEKKFLDNELLESPYKEN
DPEEIVFIYWLKP Run BLAST on NCBI transcript from alignment at sc0000580:147999..151853- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026645 ID=TCONS_00026645|Name=TCONS_00026645|organism=Clytia hemisphaerica|type=transcript|length=3855bp|location=Sequence derived from alignment at sc0000580:147999..151853- (Clytia hemisphaerica)
CGATCATGATGGATTTCAGTATTACTTTTCACTTTATACTGAAACATGGT
ACAGTGCAAAGGATTTTTGTCGAAAATTTGATGGTTTTCTTGCCAGTATC
CATAAGAAAGAAGAAAGTATATTCATCACACAAGAATTAATCAAAAGGTA
TTAATTCATTACTCCTCTTTCCAATAACCTATCAATCTTTAGTGGCGCGG
TCGGCGTCGCGATCAGCTTTTACGGAAACTAGTAATGAGCTTACAAGAAA
AAATTTTCGACAACGGTATCAAAAGCCAAAATGGTGTAAGGTATGTGCAA
CCTATAAGGGTCCCATGCATTTGAGTATTACGTCAAATACTTTTTTGCAT
CAAGACGTCTTTTTTTAAGTTGGTGAATCTCGCAAGGAAAATGGAGGAAA
AAATCGATGAAAATGACCAAGAATTGCCGCTTGAAAATGAGGTTTGCACC
CCAACAAAATGCATTATTAGAGAAGAAACGACACCAAAAGACACTCTGAC
CTGCAGGAAGTACCACCGAGATGTTCATTATAACTGTTCCCAGCTACCAA
TCTACCAAATACATATTTGCTTAACGTTTAAATCTCGAAGTTTCCAATGT
CAAAGTTGCGTTTAGATCTCACCAGAGCTGATGGAACGAGTTGAAACATG
CAAAAACACCAAAATCGAAGGACTTCAAAAGGAAATTAAAGCATGTGAAA
ACGTCATGAAAGTACAAAATGAAGAAATCTCCCAACTGAGATCAAAAGAC
GTTAACGTTATTACAAAAGAAATCAAAGAAAGCATCGAAGCAAAGATGAG
CATACTCGAGAAGAAGATAGAAACAAAGATCGAGAACATCATAATCGAAA
AGAAGCACGAGCTGAAAGAGGTTAGTTATGCTGAAGCTGTATCCAAACAT
ATGAATCAACAATCGAATAAGGTGGAGAAAATAACTCGAAGTAAAACAGT
CGGCAAACAACAATCCACAGCGTGCAACCTAATTTTCCATGGAATCAAAG
AACATTTGGAGGATCCCGAGAATACAACGAAAATTTACGACGAGAAATTT
ATCAAGCACAGAATCCTTGGATTACAACGGGTATCAAGGACATAAAAATT
GTAAACACACAGAGGATTGGAGTATTCACGGAAGAGAGAGAGGAGGAAGG
GAGGTATCGACCAATCAAGGTAGTGTTTGAAAATGAAGAAGACAAGAACA
AAGTCTTGAGAACCATCACGACATACAAAGGCCATCCTTCACCCTATAGA
GCAACAGAAGACCTCACGATTTTGGAACGATTGACAATCAAAGAATTTTG
CAAGAGAGCACGCGAGCTCAATGCTCAAATGAAAGACAAAACTATTCAAT
TTAAAGTCAGGAGAAGCCCCAGAACAAAACTATACCTAAAGAAAATTATA
ACAACAAGCATTTGTAAAAAAGATAGGTTCTTAGAGGCCCACGGCGCGCC
TTGAACCTCAATCCTTTAATAAATAAATAAATAAATTTTCACACCCCGGA
AAGTAATTTGTTTTTTTCATCTATTTTCGTTTTTTGAAAAGTGTTTGTGA
GATGGGGGAGACGACGAAAGAAGTGTTTCTATTTATAAATCATACTTCAT
CACAGAGGTCTCCGTACGGCAATTTTTTTATCAAACAGACAATGCGCACA
GAGTGTACTACGAAGCTTTAAACGCGAGACACACCCTGGTACAGAGTACT
ACATTACTTGTATGTATAATGTTAAAAAAATCTAACAGTTTTCAAAAACA
CCCTTTTTGTCTTTTTAATTTTTCAGAAAAATTGGAACCGCCTTTATTGG
AGGTACTGACGAACCGCATGAAGGGAAATGGGTGTGGTTAGATGGCACAC
CTTGGTCTTTTGAGGCCTGGGCCGGAATAGAACCAAACAATAACAAAGGA
GCTGAACATTGTCTTGCAGTAACTAACAGACATGAAATATATAATTGGGA
TGATATACTATGCAATCAAAATGGATATTTCATCTGCAAATTCAAAGATT
TTAAAGGTACAACTAAAATGGAGCTACATGTTTTTTTTATGATAACAAAC
TATATAAGAACATAAGGCGTCGATGGCCTAAATATTAAGAACAAGTTAAG
AACATTATAAAGCTTTATATTCTAATACACTCAGTCTCTTTGAAATCGCA
CAAAAATACTTACTTTGGTGAAATACACTCTTCTCGAGATGTATAAATTT
ATTGTTGTCCTCGTTTTCAAACAGATTTCATTGCTATAAAATTACATATT
CACAATGATAGTTGTGTTGTTTACACCTCATGAGACATTTTGAATTTCAA
GTACTTTTGTTTTATAGTTAATATTTGCCTTTTGGGAATTTAAATTGGTT
TAAATGTATAATTTTATAGCAATGAAATCTGTTTGAAAACGAGGACAACA
ATAAATTTATGCATCTCGAGAAGAGTGTATTAAGAACATTTTAAAACCCT
TCTTAGGATTAAAACTCAAAATGTTAAGAACCGGAGGCTTCAAAGATTTC
GTTTTGACCTGCTCATATAGTTTCGTGTTTGTTTTTATTTTGTAGGTGAT
ATTCATGTCAGTTAGGAACAGCTGCAGCTTGCTAGAGATTTGGTTTAAGA
TTCCTAAGTAGATTAATCCGAATCTGTGTATACAATAAACTCTCTCTAAT
TCGAATCTCTCTGTAGTTCGAACTAAAATTTTGGTCCCCTTAGATTGTAG
TTTAAATTGCCCTCTGCAATTCGAATCTTTCTCTAATCCGAATAAATTTT
TTGGTCCCTTGAAGATCGAATAAGAGAAAGTCGACGTTATATATACCTTA
AAGGAAGAAATTTTGGCGGAAAGAAAATTTGGCCAAAATTTCTTCCTTTA
AGGTAGTTTTGGATATCCGATATCCTCAACAGGGGGGGGGGCACGGAATA
TATCTGGAAAAGCCCATTTTAGTTGAAGACTATGGAAGAGTATCACATTT
ATGTTTTTATATTTCAGGTGATGGTTATATCATGGAAAGCCAATTACACC
AACGGCTCTCTTACCCAATACAAATGAACGGCTGGAATAAAACGTTTGGT
AAAATACCGTTAGTTGAATGTTATGATAAATGTTTCGAAGATCGATGCAA
AATGCTTTACCATACAACCTTAAAGAAATGCACGATTTTTGAAAAGAAGT
TTTTGGACAACGAGTTGTTGGAATCACCTTACAAGGAAAATGATCCCGAA
GAGATTGTTTTTATCTATTGGCTGAAGCCCTGAACTCACCGAGAGACCCT
AAACTCACCAAGAGGCCCTTGACTCGCCAAGAGGCTCTGAATTCAACAAT
ATTATCGATCAATTACATTTGGGTGCAGTTCCAACAAAGAAAACGCTTGG
TCTAAGCGATAGGAGTAAATCACTCAAAAAATTCTCTTACGCCGTTCCAA
AAAAGTTAAGAAAAAGTCATCAAAAAAGTCAATAAAAAGTAAAAAAAAGT
CTGGAAAAGTTCCATCCATCTCTTGAGTCAGTGGTTGGGTGGAGGGATAT
AGGGCGGTAATCGTTTTTGAGCCTTGTTGGGCGGATTATTAAAGTGCTTG
AGGCAGTTGGTATCTTTTTTGAGTAGTTTACATAGGAAGGATTTCATTAA
ATGATGACGTGAAGTTTGGATCCAATGAAAGGGTCTCCTGCTGAAAGGTC
GGGTGGAAAAAGTACGTTCTACGGCAAATCATTTTTGTGACTTTGTTTAT
AATATTTTTATTTAGTCGCATAAAGTTTTTATTTTAAGCATTATTTAAGG
TCATTTTGTAAGTGCACGCTTTTTTTGTAATGATATAAGTACTCTCCAAA
AATATTTATAATGAAATTTATGATAGTTGAAGTAGTGAAAATTATTGTAT
CAATA Coding sequence (CDS) from alignment at sc0000580:147999..151853- >TCONS_00026645 ID=TCONS_00026645|Name=TCONS_00026645|organism=Clytia hemisphaerica|type=CDS|length=1926bp|location=Sequence derived from alignment at sc0000580:147999..151853- (Clytia hemisphaerica)
GTGATGGTTATATCATGGAAAGCCAATTACACCAACGGCTCTCTTACCCA
ATACAAATGAACGGCTGGAATAAAACGTTTGGTAAAATACCGTTAGTTGA
ATGTTATGATAAATGTTTCGAAGATCGATGCAAAATGCTTTACCATACAA
CCTTAAAGAAATGCACGATTTTTGAAAAGAAGTTTTTGGACAACGAGTTG
TTGGAATCACCTTACAAGGAAAATGATCCCGAAGAGATTGTTTTTATCTA
TTGGCTGAAGCCCTGAAAAAATTGGAACCGCCTTTATTGGAGGTACTGAC
GAACCGCATGAAGGGAAATGGGTGTGGTTAGATGGCACACCTTGGTCTTT
TGAGGCCTGGGCCGGAATAGAACCAAACAATAACAAAGGAGCTGAACATT
GTCTTGCAGTAACTAACAGACATGAAATATATAATTGGGATGATATACTA
TGCAATCAAAATGGATATTTCATCTGCAAATTCAAAGATTTTAAAGGATC
ATGATGGATTTCAGTATTACTTTTCACTTTATACTGAAACATGGTACAGT
GCAAAGGATTTTTGTCGAAAATTTGATGGTTTTCTTGCCAGTATCCATAA
GAAAGAAGAAAGTATATTCATCACACAAGAATTAATCAAAAGGTGATGGT
TATATCATGGAAAGCCAATTACACCAACGGCTCTCTTACCCAATACAAAT
GAACGGCTGGAATAAAACGTTTGGTAAAATACCGTTAGTTGAATGTTATG
ATAAATGTTTCGAAGATCGATGCAAAATGCTTTACCATACAACCTTAAAG
AAATGCACGATTTTTGAAAAGAAGTTTTTGGACAACGAGTTGTTGGAATC
ACCTTACAAGGAAAATGATCCCGAAGAGATTGTTTTTATCTATTGGCTGA
AGCCCTGAAAAAATTGGAACCGCCTTTATTGGAGGTACTGACGAACCGCA
TGAAGGGAAATGGGTGTGGTTAGATGGCACACCTTGGTCTTTTGAGGCCT
GGGCCGGAATAGAACCAAACAATAACAAAGGAGCTGAACATTGTCTTGCA
GTAACTAACAGACATGAAATATATAATTGGGATGATATACTATGCAATCA
AAATGGATATTTCATCTGCAAATTCAAAGATTTTAAAGGATCATGATGGA
TTTCAGTATTACTTTTCACTTTATACTGAAACATGGTACAGTGCAAAGGA
TTTTTGTCGAAAATTTGATGGTTTTCTTGCCAGTATCCATAAGAAAGAAG
AAAGTATATTCATCACACAAGAATTAATCAAAAGGTGATGGTTATATCAT
GGAAAGCCAATTACACCAACGGCTCTCTTACCCAATACAAATGAACGGCT
GGAATAAAACGTTTGGTAAAATACCGTTAGTTGAATGTTATGATAAATGT
TTCGAAGATCGATGCAAAATGCTTTACCATACAACCTTAAAGAAATGCAC
GATTTTTGAAAAGAAGTTTTTGGACAACGAGTTGTTGGAATCACCTTACA
AGGAAAATGATCCCGAAGAGATTGTTTTTATCTATTGGCTGAAGCCCTGA
AAAAATTGGAACCGCCTTTATTGGAGGTACTGACGAACCGCATGAAGGGA
AATGGGTGTGGTTAGATGGCACACCTTGGTCTTTTGAGGCCTGGGCCGGA
ATAGAACCAAACAATAACAAAGGAGCTGAACATTGTCTTGCAGTAACTAA
CAGACATGAAATATATAATTGGGATGATATACTATGCAATCAAAATGGAT
ATTTCATCTGCAAATTCAAAGATTTTAAAGGATCATGATGGATTTCAGTA
TTACTTTTCACTTTATACTGAAACATGGTACAGTGCAAAGGATTTTTGTC
GAAAATTTGATGGTTTTCTTGCCAGTATCCATAAGAAAGAAGAAAGTATA
TTCATCACACAAGAATTAATCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026645-exon-sc0000580-1575043694:151707..151853 | TCONS_00026645-exon-sc0000580-1575043694:151707..151853 | Clytia hemisphaerica | exon |
| TCONS_00026645-exon-sc0000580-1575043694:149848..150077 | TCONS_00026645-exon-sc0000580-1575043694:149848..150077 | Clytia hemisphaerica | exon |
| TCONS_00026645-exon-sc0000580-1575043694:147999..148886 | TCONS_00026645-exon-sc0000580-1575043694:147999..148886 | Clytia hemisphaerica | exon |
| TCONS_00026645-exon-sc0000580-1510915933:151707..151853 | TCONS_00026645-exon-sc0000580-1510915933:151707..151853 | Clytia hemisphaerica | exon |
| TCONS_00026645-exon-sc0000580-1510915933:149848..150077 | TCONS_00026645-exon-sc0000580-1510915933:149848..150077 | Clytia hemisphaerica | exon |
| TCONS_00026645-exon-sc0000580-1510915933:147999..148886 | TCONS_00026645-exon-sc0000580-1510915933:147999..148886 | Clytia hemisphaerica | exon |
| TCONS_00026645-exon-sc0000580-1491911889:151707..151853 | TCONS_00026645-exon-sc0000580-1491911889:151707..151853 | Clytia hemisphaerica | exon |
| TCONS_00026645-exon-sc0000580-1491911889:149848..150077 | TCONS_00026645-exon-sc0000580-1491911889:149848..150077 | Clytia hemisphaerica | exon |
| TCONS_00026645-exon-sc0000580-1491911889:147999..148886 | TCONS_00026645-exon-sc0000580-1491911889:147999..148886 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000580 | supercontig | sc0000580:147999..151853 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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