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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026651 ID=TCONS_00026651|Name=TCONS_00026651|organism=Clytia hemisphaerica|type=transcript|length=590bp
CTTCATATATTGTTCTTTAGGAAGGTAATTCAATTTCTAGGCAATAAAGT
ACCAATCAGAGATATCTAAACAAAGTTCAAAAGTATCAATATCGTCAAAG
TCATTTTAAATTTGAGCATACCAATATGAATCTCAATCATCTTTATATCC
TCCTCATCAATTTGATGACATTGCATCTTGCATCGACCGTTTTCGTATCT
ACTTTTCGATCGAAGCCCGACGCTTGCCGATCAATGGTTTGCCCGATCGG
GCATAAATGCGTAAGCTCGGGAGAAGTTGCCGATTGCGTTTGCGATCATC
AATGTTCCCAAACAAAAGACACTGGTCCAGTTTGTGCTGATGGAAAAACG
TATAAGAATTTGTGTCAATTGAATATGAAAGTTTGTcaagaacaaagaaa
tatatTGGTTCAACATTATGGGAAATGTAGACAATGCGCAGACGCCGAGC
GTGAATCAAAAAATGGCTTGTGTAAAATGTGGCAGAAGATGAGATTGTGT
GAAATCAGACCAAAAATTATGAGCATTTACTGCAAGAAGACTTGTGGATA
TTGTAAATTGGATGCACCAGCACGTCACAGATGCGGACGN Run BLAST on NCBI transcript from alignment at sc0000580:162471..167701- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026651 ID=TCONS_00026651|Name=TCONS_00026651|organism=Clytia hemisphaerica|type=transcript|length=5231bp|location=Sequence derived from alignment at sc0000580:162471..167701- (Clytia hemisphaerica)
CTTCATATATTGTTCTTTAGGAAGGTAATTCAATTTCTAGGCAATAAAGT
ACCAATCAGAGATATCTAAACAAAGTTCAAAAGTATCAATATCGTCAAAG
TCATTTTAAATTTGAGCATACCAATATGAATCTCAATCATCTTTATATCC
TCCTCATCAATTTGATGACATTGCATCTTGCATCGACCGTTTTCGTATCT
ACTTTTCGATCGAAGCCCGACGCTTGCCGATCAATGGTTTGCCCGATCGG
GCATAAATGCGTAAGCTCGGGAGAAGTTGCCGATTGCGTTTGCGATCATC
AATGTTCCCAAACAAAAGACACTGGTCCAGTTTGTGCTGATGGAAAAACG
TATAAGAATTTGTGTCAATTGAATATGAAAGTTTGTCAAGAACAAAGAAA
TATATTGGTTCAACATTATGGGAAATGTAGTAAGTAAATTTCTCAAACTC
GAATACAGTCCCTTTACCACGGGGGTACTAGGGTTGTGAGCTGACGGGGA
GGGGGGTCTTTTGATCATCGGACCCTTACCGGAACTAAAAAGGAGAAAAC
AAAGGAAAATTTTGTGAATTTTACGACGAGTTTTACGACCCTTACCGGGA
CAAATTTGACCAAATTTCGATCTTTCTTGGGGTAAAAAGTTGAAATTTTC
CTATTTCTCCTACCCTTAGTGGGACTGAAATTTGATTTTCTGATTTTTCC
GACCCTTAGCGGAACTTCAATCCAAAAAATGTACCCTTAAGGGCGGCACA
TACCGTACCCTCCATTTGCCTTAGTACCTTCGGGCCCTTTACTCACTTTT
CGGATAGCTTACGAAAGATTGTATCACGTCTATCAGTAAAATCAAAAAGT
GATGCAAGTGACTCTTGGTACGAGATTGTAAATTCTAACTTAGCCTGCAC
CAAATTTTCCTTTACAGAAACGAAAGACACAGTTCAGGCTGTTAAGATAT
CTGAATGCTTCAAAAATTTTGGATGTTCTCATAAAAAACGTGTACCTTTG
AGACGTATCTAATCCCAGGGAAGACATTGCATAGATACCTGAAAAATAAA
AATTATGGTATTTCTTCTTCTTCTTGGAATGAAAAACTAACTTCGACTTT
TCAATTATAACAGGACAATGCGCAGACGCCGAGCGTGAATCAAAAAATGG
CTTGTGTAAAATGTGGCAGAAGATGAGATTGTGTGAAATCAGACCAAAAA
TTATGAGCATTTACTGCAAGAAGACTTGTGGATATTGTAGTAAGTTATTA
TTATGTTGTTGACGGCAAGAGGTTCTAGATCCATTTGTGTTCTAAAATTC
TTGCTCCGAGGTACATTTTGTACTAGAATTGATACAGCAACTTTGAAAAA
TCCCAACAAAATCAAAGCTACTACAAGCTTGTTAGGCCTGTAGATTTATA
AAAGACATGGTTATCGAACTTCTAATCACAACATTGTCCGACGGGACGAG
GTCTAGTTAGGATCTGAACTCTTGAGTCAATGTCATAGAAACTCAAACAC
AGACTCATATTCATTCATATTATGATTTGATTTTAAGCTTAAAATTTCAA
GATGAAATTTTTTCTCTTCCCTCCTCTTAGCAACAAAGTTGTGGTTCCTA
AAAGTTAGAAAAAAACATGATTCGAAATGTAACAATTCCCACCGTAATAT
TTGGCGCAAAAGGGGAATTCTCTCAAAATTTGAAAACCGCAAGTGCTTTA
AAGTACGGTTGAGTTTTAGCTCTGAGTTTTTAACATGAGATTTAATTTAG
AAATTAGGATCTCAGGATCTAAAAGCTCAAAAATGTTCCAATAAGGCTGA
GAATATAGCCTTGAAGCCAAAAACCGAATGAAACAAAGTGGAAGTACTAA
AATCGAAATTCTCGTCCGAGCTTTAAATTCTGACAAATATTAAAACACTC
AAAAATGTCAATACATGTCAGTGTTGATTGAATGCATGCTGAGTATTTAG
GCTGACATGAACAAATATTGGAATTTCGTTTCTTCTTCTCTCGTTTAGAA
TTGGATGCACCAGCACGTCACAGATGCGGACGACAAGTTCTTTCTTCATT
TGGATGCAGTAAAAGTAAGAACATTTATTCTCAAGAAGTAACAAACCATA
TAAGAATATGAGACTTGGCAAAATATTAAGAACAAGTTAGTAAAATATTT
AGGATTTTTAGATTCTAAAACCCCAATTTCTTAAGAAATTGCACAAAAAT
ACTCAGAAAAAGGTGAAAATAAGAATATCTCCATAACATTTTCAGGCTGA
AAACTCAAAAAGGATGTCCTTATAAAAAACTGTAAATGTATTTTAACATC
CAATTTTTGTTCCACATTTTTAGAATGTCACGACCTTCGTTTCTGTAAAC
ATTTCGCAAATTCATGTGGTGATGTTTTGAATCAAGGAATTATGAAATTA
CATTGTCCTCAAAGGTGTGGATATTGTGGTAAGTTGCGTTTGAACGTAGT
TTGAGCCTCTTCTTTTACGTCAGATTTTACTCCCCGGACTAAGGATCGAA
AGACATTTTTAAGATTCTACATTCTAGACTAAGGGTCCAAAAACCTTTCT
AATATTTCACTCTCCGTGCGAAGGCTCCAAAGACCTTTGTAATATTCCAC
TTACCTGGCGATGGTTCCAATGATTTTCCGAAAAAGATTCCTATCCCGGA
CTTAGCTTTCAAGGACTTTTCTGGGGATAACAATATTTTAAAAGAGCCCT
TCACGGGGGGGGGGGGAGGTTCTAGGGGTACCCGATTCCACAATTCCGTC
AATCTTTTGTCCAATGACCGTCACACCGTGAAAATAAAGACTGAATTTCA
ATCAATGAAAATTTCTCTGAAATTGAAAATTCCGGAATTTTGACTTTTTG
GTGTCAATTCCAAAATTCCAGCCCATTTTCCGTCTCCGGCAGCGGACCTA
AATTCCGCAAATCCGTCCAAACTTTTGACGTATTCCGCGATTCCATACGA
AAAGAAAGAACATTTCCACCACTTCGTTAACCTTGATAACCCTCCCTTCA
AATTTTTGTTTAGATAATCTAACCCAAGCAAACGAAAGCCCTTCACCAAA
TAAGCATATATAGTATAATGTCAGTAGTTGTCAAAGCAAATCTTTCAAAA
AATGAGCAATAATGCTAAACCCCAGAACTGATCTGAAAATCTGAGTTAAT
AAAAAAAATTGTATTCTTTTCTTTTACAGTGACACAAATTCTTCCCACAT
TCAACGTACCCTACAAACAGTAAAGAAACTCTGACTAATGCTGAAGCTTG
AAAAAAAAACACAAAAATTCAAAATGGTAAAAGGAGACCTGAAACAGATG
GAAAAGCACATGGTTGTGCGTGATACTAATCACAATAGCAATAAAATTGT
TGCCGGGGGTAACGGTGACGTTGCTGAAAGTCGTTTTTCCCGCCAATTGT
TGGGAATCATCATTTATATTTTGAACAATTACCTGCAGAAAGGAGAAACA
ATGTAAATATTGAATTTAGAAAGGCGGTGAAAATGATGTTGGATATATGC
AAACCTCTTAAACACCACAATGTCTATACTGCTGCGAATTAGAATATCAG
ACAATATCAAACATTTCTTCGGGACACCGTGTCTAGTTGAACTGAATATA
TACTAGCTGGCACATAACGTCACACACCCTTCTCACAGACCCGGTACCCA
GTGGATCTGTGAGAGGGGGTGTATTGTCTAATGTTCACAACGTCCATAAA
ACGTTAGATGAACATTGAAACAACGTTGTGTGTTAGGTGGGCTCAAACTT
TTGAATGTATGTTTAATATCATACATCAGTTTTTTAAAGGACTAGGATCT
AGTTGTGTTCGTCAAAATAATATGTTTCAAAAACAACTTACCTCAATGAA
GTAAATCATTTCTTAGGTTTTATTCGTTTGAAATATTTTCAGTTTTTTTC
CGGACAAACTGCATAGCCCGCGAAGAAAAAATGTTTCATTGACACAACTA
AAACCTAGACCTAGAAATGTGAAACGCATTCTCTACTTTCAAAATGTTAA
TTCTACTAGTTTTAGATATTTTTTACTTATTTAACGAAACCATTTTATAT
ATCATATACATAAAGTCGTGTAAAACTAAAATTAAATTTTGTAAATATAT
TATGAAAATAAAACTCTCTTGAATATAGTTCTGATAATTGAAATTTTAAT
TTTTCCTTCCCAGGCCTTTTCCTTTGTCTTGGATACACGCAAAAGTAGTT
TGTACACAGACTCGATTTCTTCGGCTAATTTTAAAATTCATTGTCGTAGA
GGTACTACCAACGATATACGTGAGTGAGATCTCTGGTACAGACTACACGC
TTTTTATATTTATAAGAATGGTGTAAATCCATTTCATCATGGATATTCTT
AACTTTTTTGGGAAAATCATCCTAAAATATTCTTACAGCATTCTTACGTT
AAGATCCTAATTGACAATTTATAATTTAAAATTGTCTAAAAATAGCATTC
TTAGCTTGAGTAGCAAAATTCTATGATGTGATATTCTTAGCATATTCTTA
ATTGTTGGCCATTTTCATCATGGACATTCTTATAAAGTGTATTCTTATAA
AAAATAGCATTAGTCAGGAGGAGACACTGAAGAGAATATGGGTGCGGAAT
AGCCTGGAAATATAAGCCAGTTTGATTGAGCCATTAGGATAAATCTAATG
GTCATATACCTTATCGGCCCTTTTTTTCGCCGGCCCTTATTGGCGTTATT
TTTAGGCTCGTGGCGTAATAAGAGCCGGTGTTAAAAGGGCCGGACCCATA
TTCATTCATATTATGATTTGATTTTAAGCTTTCAAATTTCAAGATGAAAA
GTTTTCTCTTCCCTCGAAATGGAACAATGCCCACCGTAATATTTGGCGCA
AAAAGGGAATTCTCTAAAAATCTGAAAACCGCAAGTGCTTTAAAGTACGG
TCGAGTTTTAACTCTGAGTTTTTAACATGAGATTTAATTTAAACATTAGG
ATCTCAGGATTTAAAAGCTCAAAAATGTTCCAATAAGGCTGAGAATATAG
CCTTGAAGCCACTTAAAGAAAAACCGAACGAAACAAAGTGGAAGTACTAA
AATCGAAATTTTTGTCCGAGCTTTAAATTCTGACAAATATTAAAATTACT
CGAAAGTGTCAATACATGTCAGTGTTGATTGAATGTATGCTGAGTATTTT
GGCTGACATGAAGAAATAGTGGAATTTAATTTCTTCTCTCGTTTAGAATT
GGATGCACCAGCACGTCACAGATGCGGACGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026651-exon-sc0000580-1575043694:167273..167701 | TCONS_00026651-exon-sc0000580-1575043694:167273..167701 | Clytia hemisphaerica | exon |
| TCONS_00026651-exon-sc0000580-1575043694:166463..166588 | TCONS_00026651-exon-sc0000580-1575043694:166463..166588 | Clytia hemisphaerica | exon |
| TCONS_00026651-exon-sc0000580-1575043694:162471..162505 | TCONS_00026651-exon-sc0000580-1575043694:162471..162505 | Clytia hemisphaerica | exon |
| TCONS_00026651-exon-sc0000580-1510915933:167273..167701 | TCONS_00026651-exon-sc0000580-1510915933:167273..167701 | Clytia hemisphaerica | exon |
| TCONS_00026651-exon-sc0000580-1510915933:166463..166588 | TCONS_00026651-exon-sc0000580-1510915933:166463..166588 | Clytia hemisphaerica | exon |
| TCONS_00026651-exon-sc0000580-1510915933:162471..162505 | TCONS_00026651-exon-sc0000580-1510915933:162471..162505 | Clytia hemisphaerica | exon |
| TCONS_00026651-exon-sc0000580-1491911889:167273..167701 | TCONS_00026651-exon-sc0000580-1491911889:167273..167701 | Clytia hemisphaerica | exon |
| TCONS_00026651-exon-sc0000580-1491911889:166463..166588 | TCONS_00026651-exon-sc0000580-1491911889:166463..166588 | Clytia hemisphaerica | exon |
| TCONS_00026651-exon-sc0000580-1491911889:162471..162505 | TCONS_00026651-exon-sc0000580-1491911889:162471..162505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000580 | supercontig | sc0000580:162471..167701 - |
Blast
The following BLAST results are available for this feature:
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