TCONS_00026652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026652
Unique NameTCONS_00026652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026652 ID=TCONS_00026652|Name=TCONS_00026652|organism=Clytia hemisphaerica|type=transcript|length=1452bp
CTTCATATATTGTTCTTTAGGAAGGTAATTCAATTTCTAGGCAATAAAGT
ACCAATCAGAGATATCTAAACAAAGTTCAAAAGTATCAATATCGTCAAAG
TCATTTTAAATTTGAGCATACCAATATGAATCTCAATCATCTTTATATCC
TCCTCATCAATTTGATGACATTGCATCTTGCATCGACCGTTTTCGTATCT
ACTTTTCGATCGAAGCCCGACGCTTGCCGATCAATGGTTTGCCCGATCGG
GCATAAATGCGTAAGCTCGGGAGAAGTTGCCGATTGCGTTTGCGATCATC
AATGTTCCCAAACAAAAGACACTGGTCCAGTTTGTGCTGATGGAAAAACG
TATAAGAATTTGTGTCAATTGAATATGAAAGTTTGTcaagaacaaagaaa
tatatTGGTTCAACATTATGGGAAATGTAGACAATGCGCAGACGCCGAGC
GTGAATCAAAAAATGGCTTGTGTAAAATGTGGCAGAAGATGAGATTGTGT
GAAATCAGACCAAAAATTATGAGCATTTACTGCAAGAAGACTTGTGGATA
TTGTAAATTGGATGCACCAGCACGTCACAGATGCGGACGACAAGTTCTTT
CTTCATTTGGATGCAGTAAAAAATGTCACGACCTTCGTTTCTGTAAACAT
TTCGCAAATTCATGTGGTGATGTTTTGAATCAAGGAATTATGAAATTACA
TTGTCCTCAAAGGTGTGGATATTGTGTGACACAAATTCTTCCCACATTCA
ACGTACCCTACAAACAGTAAAGAAACTCTGACTAATGCTgaagcttgaaa
aaaaaacacaaaaattcaaaatggtaaaaGGAGACCTGAAACAGATGGAA
AAGCACATGGTTGTGCGTGATACTAATCACAATAGCAATAAAATTGTTGC
CGGGGGTAACGGTGACGTTGCTGAAAGTCGTTTTTCCCGCCAATTGTTGG
GAATCATCATTTATATTTTGAACAATTACCTGCAGAAAGGAGAAACAATG
TAAATATTGAATTTAGAAAGGCGGTGAAAATGATGTTGGATATATGCAAA
CCTCTTAAACACCACAATGTCTATACTGCTGCGAATTAGAATATCAGACA
ATATCAAACATTTCTTCGGGACACCGTGTCTAGTTGAACTGAATATATAc
tagctggcacataacgtcacacacccttctcacagacccggtaccCAGTG
GATCTGTGAGAGGGGGTGTATtgtctaatgttcacaacgtccataaaacg
ttagatgaacattgaaacaacgttgtgtgttaGGTGGGCTCAAACTTTTG
AATGTATGTTTAATATCATACATCAGTTTTTTAAAGGACTAGGATCTAGT
TGTGTTCGTCAAAATAATATGTTTCAAAAACAACTTACCTCAATGAAGTA
AATCATTTCTTAGGTTTTattcgtttgaaatattttcagtttttttccgG
AC
Run BLAST on NCBI

transcript from alignment at sc0000580:163797..167701-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026652 ID=TCONS_00026652|Name=TCONS_00026652|organism=Clytia hemisphaerica|type=transcript|length=3905bp|location=Sequence derived from alignment at sc0000580:163797..167701- (Clytia hemisphaerica)
CTTCATATATTGTTCTTTAGGAAGGTAATTCAATTTCTAGGCAATAAAGT
ACCAATCAGAGATATCTAAACAAAGTTCAAAAGTATCAATATCGTCAAAG
TCATTTTAAATTTGAGCATACCAATATGAATCTCAATCATCTTTATATCC
TCCTCATCAATTTGATGACATTGCATCTTGCATCGACCGTTTTCGTATCT
ACTTTTCGATCGAAGCCCGACGCTTGCCGATCAATGGTTTGCCCGATCGG
GCATAAATGCGTAAGCTCGGGAGAAGTTGCCGATTGCGTTTGCGATCATC
AATGTTCCCAAACAAAAGACACTGGTCCAGTTTGTGCTGATGGAAAAACG
TATAAGAATTTGTGTCAATTGAATATGAAAGTTTGTCAAGAACAAAGAAA
TATATTGGTTCAACATTATGGGAAATGTAGTAAGTAAATTTCTCAAACTC
GAATACAGTCCCTTTACCACGGGGGTACTAGGGTTGTGAGCTGACGGGGA
GGGGGGTCTTTTGATCATCGGACCCTTACCGGAACTAAAAAGGAGAAAAC
AAAGGAAAATTTTGTGAATTTTACGACGAGTTTTACGACCCTTACCGGGA
CAAATTTGACCAAATTTCGATCTTTCTTGGGGTAAAAAGTTGAAATTTTC
CTATTTCTCCTACCCTTAGTGGGACTGAAATTTGATTTTCTGATTTTTCC
GACCCTTAGCGGAACTTCAATCCAAAAAATGTACCCTTAAGGGCGGCACA
TACCGTACCCTCCATTTGCCTTAGTACCTTCGGGCCCTTTACTCACTTTT
CGGATAGCTTACGAAAGATTGTATCACGTCTATCAGTAAAATCAAAAAGT
GATGCAAGTGACTCTTGGTACGAGATTGTAAATTCTAACTTAGCCTGCAC
CAAATTTTCCTTTACAGAAACGAAAGACACAGTTCAGGCTGTTAAGATAT
CTGAATGCTTCAAAAATTTTGGATGTTCTCATAAAAAACGTGTACCTTTG
AGACGTATCTAATCCCAGGGAAGACATTGCATAGATACCTGAAAAATAAA
AATTATGGTATTTCTTCTTCTTCTTGGAATGAAAAACTAACTTCGACTTT
TCAATTATAACAGGACAATGCGCAGACGCCGAGCGTGAATCAAAAAATGG
CTTGTGTAAAATGTGGCAGAAGATGAGATTGTGTGAAATCAGACCAAAAA
TTATGAGCATTTACTGCAAGAAGACTTGTGGATATTGTAGTAAGTTATTA
TTATGTTGTTGACGGCAAGAGGTTCTAGATCCATTTGTGTTCTAAAATTC
TTGCTCCGAGGTACATTTTGTACTAGAATTGATACAGCAACTTTGAAAAA
TCCCAACAAAATCAAAGCTACTACAAGCTTGTTAGGCCTGTAGATTTATA
AAAGACATGGTTATCGAACTTCTAATCACAACATTGTCCGACGGGACGAG
GTCTAGTTAGGATCTGAACTCTTGAGTCAATGTCATAGAAACTCAAACAC
AGACTCATATTCATTCATATTATGATTTGATTTTAAGCTTAAAATTTCAA
GATGAAATTTTTTCTCTTCCCTCCTCTTAGCAACAAAGTTGTGGTTCCTA
AAAGTTAGAAAAAAACATGATTCGAAATGTAACAATTCCCACCGTAATAT
TTGGCGCAAAAGGGGAATTCTCTCAAAATTTGAAAACCGCAAGTGCTTTA
AAGTACGGTTGAGTTTTAGCTCTGAGTTTTTAACATGAGATTTAATTTAG
AAATTAGGATCTCAGGATCTAAAAGCTCAAAAATGTTCCAATAAGGCTGA
GAATATAGCCTTGAAGCCAAAAACCGAATGAAACAAAGTGGAAGTACTAA
AATCGAAATTCTCGTCCGAGCTTTAAATTCTGACAAATATTAAAACACTC
AAAAATGTCAATACATGTCAGTGTTGATTGAATGCATGCTGAGTATTTAG
GCTGACATGAACAAATATTGGAATTTCGTTTCTTCTTCTCTCGTTTAGAA
TTGGATGCACCAGCACGTCACAGATGCGGACGACAAGTTCTTTCTTCATT
TGGATGCAGTAAAAGTAAGAACATTTATTCTCAAGAAGTAACAAACCATA
TAAGAATATGAGACTTGGCAAAATATTAAGAACAAGTTAGTAAAATATTT
AGGATTTTTAGATTCTAAAACCCCAATTTCTTAAGAAATTGCACAAAAAT
ACTCAGAAAAAGGTGAAAATAAGAATATCTCCATAACATTTTCAGGCTGA
AAACTCAAAAAGGATGTCCTTATAAAAAACTGTAAATGTATTTTAACATC
CAATTTTTGTTCCACATTTTTAGAATGTCACGACCTTCGTTTCTGTAAAC
ATTTCGCAAATTCATGTGGTGATGTTTTGAATCAAGGAATTATGAAATTA
CATTGTCCTCAAAGGTGTGGATATTGTGGTAAGTTGCGTTTGAACGTAGT
TTGAGCCTCTTCTTTTACGTCAGATTTTACTCCCCGGACTAAGGATCGAA
AGACATTTTTAAGATTCTACATTCTAGACTAAGGGTCCAAAAACCTTTCT
AATATTTCACTCTCCGTGCGAAGGCTCCAAAGACCTTTGTAATATTCCAC
TTACCTGGCGATGGTTCCAATGATTTTCCGAAAAAGATTCCTATCCCGGA
CTTAGCTTTCAAGGACTTTTCTGGGGATAACAATATTTTAAAAGAGCCCT
TCACGGGGGGGGGGGGAGGTTCTAGGGGTACCCGATTCCACAATTCCGTC
AATCTTTTGTCCAATGACCGTCACACCGTGAAAATAAAGACTGAATTTCA
ATCAATGAAAATTTCTCTGAAATTGAAAATTCCGGAATTTTGACTTTTTG
GTGTCAATTCCAAAATTCCAGCCCATTTTCCGTCTCCGGCAGCGGACCTA
AATTCCGCAAATCCGTCCAAACTTTTGACGTATTCCGCGATTCCATACGA
AAAGAAAGAACATTTCCACCACTTCGTTAACCTTGATAACCCTCCCTTCA
AATTTTTGTTTAGATAATCTAACCCAAGCAAACGAAAGCCCTTCACCAAA
TAAGCATATATAGTATAATGTCAGTAGTTGTCAAAGCAAATCTTTCAAAA
AATGAGCAATAATGCTAAACCCCAGAACTGATCTGAAAATCTGAGTTAAT
AAAAAAAATTGTATTCTTTTCTTTTACAGTGACACAAATTCTTCCCACAT
TCAACGTACCCTACAAACAGTAAAGAAACTCTGACTAATGCTGAAGCTTG
AAAAAAAAACACAAAAATTCAAAATGGTAAAAGGAGACCTGAAACAGATG
GAAAAGCACATGGTTGTGCGTGATACTAATCACAATAGCAATAAAATTGT
TGCCGGGGGTAACGGTGACGTTGCTGAAAGTCGTTTTTCCCGCCAATTGT
TGGGAATCATCATTTATATTTTGAACAATTACCTGCAGAAAGGAGAAACA
ATGTAAATATTGAATTTAGAAAGGCGGTGAAAATGATGTTGGATATATGC
AAACCTCTTAAACACCACAATGTCTATACTGCTGCGAATTAGAATATCAG
ACAATATCAAACATTTCTTCGGGACACCGTGTCTAGTTGAACTGAATATA
TACTAGCTGGCACATAACGTCACACACCCTTCTCACAGACCCGGTACCCA
GTGGATCTGTGAGAGGGGGTGTATTGTCTAATGTTCACAACGTCCATAAA
ACGTTAGATGAACATTGAAACAACGTTGTGTGTTAGGTGGGCTCAAACTT
TTGAATGTATGTTTAATATCATACATCAGTTTTTTAAAGGACTAGGATCT
AGTTGTGTTCGTCAAAATAATATGTTTCAAAAACAACTTACCTCAATGAA
GTAAATCATTTCTTAGGTTTTATTCGTTTGAAATATTTTCAGTTTTTTTC
CGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014998XLOC_014998Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026652-exon-sc0000580-1575043694:167273..167701TCONS_00026652-exon-sc0000580-1575043694:167273..167701Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1575043694:166463..166588TCONS_00026652-exon-sc0000580-1575043694:166463..166588Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1575043694:165638..165703TCONS_00026652-exon-sc0000580-1575043694:165638..165703Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1575043694:165274..165378TCONS_00026652-exon-sc0000580-1575043694:165274..165378Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1575043694:163797..164522TCONS_00026652-exon-sc0000580-1575043694:163797..164522Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1510915933:167273..167701TCONS_00026652-exon-sc0000580-1510915933:167273..167701Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1510915933:166463..166588TCONS_00026652-exon-sc0000580-1510915933:166463..166588Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1510915933:165638..165703TCONS_00026652-exon-sc0000580-1510915933:165638..165703Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1510915933:165274..165378TCONS_00026652-exon-sc0000580-1510915933:165274..165378Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1510915933:163797..164522TCONS_00026652-exon-sc0000580-1510915933:163797..164522Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1491911889:167273..167701TCONS_00026652-exon-sc0000580-1491911889:167273..167701Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1491911889:166463..166588TCONS_00026652-exon-sc0000580-1491911889:166463..166588Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1491911889:165638..165703TCONS_00026652-exon-sc0000580-1491911889:165638..165703Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1491911889:165274..165378TCONS_00026652-exon-sc0000580-1491911889:165274..165378Clytia hemisphaericaexon
TCONS_00026652-exon-sc0000580-1491911889:163797..164522TCONS_00026652-exon-sc0000580-1491911889:163797..164522Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000580supercontigsc0000580:163797..167701 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0911828	0	0	0.0459801	0	0	0	0	0	12.448	7.87638	0	0.100321	0.475245	0.156472	4.00298	5.95583	2.87435	5.48077	1.26457	0.486847	5.901	5.95199	3.71732	1.12385	0.0546906	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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