TCONS_00026692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026692
Unique NameTCONS_00026692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026692 ID=TCONS_00026692|Name=TCONS_00026692|organism=Clytia hemisphaerica|type=transcript|length=1851bp
ATTCCTGTAAAGATAAAAACCAGTAATTACTTAACTTACAGGATATTTAA
AGTACTACAATCAGGATTCATCAACGGTCTTTTTAGAAGCAGTGCTTATA
AGTAATATCACTTATAATTATAAGAGTCGAATGGATATGACGTTAACGGA
GAAGATAGTGAATCACGCGCCAACAATTGACCACAAAGGGAGCTTCCAAT
TAGCAAGCGACACAAGAAAAATTACAGTGGTTTTGAAGTGAGTAGTTGTG
CAGAGGTTAACATAGTTGGTAAGTTTGTTGGCGATTACTGGCAGTTTTAA
ATATTGGTGAAAAAATGAGCAGAATCGAGCACAAGCCACTAGTTAACTCT
GAAGAACTATCACTACCACCAGAGCTTACATCACCAGAACTTGACGTTAT
CGATTTAAACGAAGACGAGCTTCTCGAAGATCTCGAAGAACAATCGAAAT
TATTCTCGATTTGGAATCGTAAAACAATGCGATTGGAAGCAATAGTTGTT
GCTGTTCTGACCATGGTCAGCTCCACAGTTTACACTGTCAAAATGTATAA
TTGGTGGCATGATAAAATGGAATTATATATCTACGCCTCTGAACTTGAAG
CATGGCGAATGAGACGCCTTTGCCAGACTTTAGTATGGTTCTCTGTTATT
GGTAATATCATGGTATTCGTCAGCTCCATTCCTGTCTTGTTTGCTGCATT
GCCAAAGAGTTTGACGGAACGCTGCCAGAGGCGTCACCATCTGTTACCAT
TCATCTtcgttcaaattttcaccatgATCACAGCAATCAATCGTTTGATG
TTAACTTTCATTTTCTCAGAAAGTGCTACAAACGATAGTAATTTAGACTT
TGCAAAATTATATGAGATCAGATCTTTAGATATTGTGANttcattttttc
agaaagtgctaCAAACGATAGTAATTTAGACTTTGCAAAATTATATGAGA
TCAGATCTTTAGATATTGTGACCAGTGCATTGGCCTTATTTTTGATTTGT
GCTTTTTACCGAGATTTAAAGAAATCCAAAGGACGTGTGGAGGATATCGA
AGCATCACCAGTGATTATTAGAACTGTAAAAGTATTGGGAACTTTAACTA
ATGCTGTGGAACGAAAAGCGATCCCATTTTGTGTCAATGGTGCTATGTAA
ATAATGAAGTAGTTAATTTGTACAGAAGAACTTGGAAACCCTGGCGAAGA
AGGCAAAATCAAGGATGTGCTCTTGCCTTGTAACTCTAAGCTAAGTTAGG
AATGGCTTAGGTATATAGGCTTTggcttcaaaaaattgagattcTCATTC
CCAGATTTTTTactcgaatgtttttttttaactcccAACCTAAGCTTATG
AAATATACAGAATATTTTCCAACTCGAGTAACCTTTTTCATTCGTCGAAA
AATCGCTCAAGgtatttgatttttataagaagTTTTCATGATGAATTATA
CTACTATACATCACCTTCCAATTATGAATTCCAAAAACATAATATGGCGT
ACAGTCGACAATTAAGCTACGAAGAGAGAAAGGCATTGAATCGTGTCAAA
AGTTAAGAGGTGGTTTCCTGGCCGCGGTAATAGCTACAAAACGAACAGCT
TCCTTCCACAATCTCTTCaccaaaagtacttgaaatagAATGTATTGTTC
CTTAGCTCAGATAAATTGTAAATAGTTTCCTCACAAATATTGTATTTTGT
ACTTCGAAAGtttcatataatttttcttCGTTGCCGTATTTATTTCATAC
ATATACTGTACCTTATTTCGAtctgaaaatgttatttcttgttttttaca
gtttttttaaaaatcatgttAAAGAGATGTGCATATTATTGCAATTTTTA
C
Run BLAST on NCBI

protein sequence of TCONS_00026692-protein

>TCONS_00026692-protein ID=TCONS_00026692-protein|Name=TCONS_00026692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MSRIEHKPLVNSEELSLPPELTSPELDVIDLNEDELLEDLEEQSKLFSIW
NRKTMRLEAIVVAVLTMVSSTVYTVKMYNWWHDKMELYIYASELEAWRMR
RLCQTLVWFSVIGNIMVFVSSIPVLFAALPKSLTERCQRRHHLLPFIFVQ
IFTMITAINRLMLTFIFSESATNDSNLDFAKLYEIRSLDIVXSFFQKVLQ
TIVI
Run BLAST on NCBI

transcript from alignment at sc0000581:173395..176289+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026692 ID=TCONS_00026692|Name=TCONS_00026692|organism=Clytia hemisphaerica|type=transcript|length=2895bp|location=Sequence derived from alignment at sc0000581:173395..176289+ (Clytia hemisphaerica)
ATTCCTGTAAAGATAAAAACCAGTAATTACTTAACTTACAGGATATTTAA
AGTACTACAATCAGGATTCATCAACGGTCTTTTTAGAAGCAGTGCTTATA
AGTAATATCACTTATAATTATAAGAGTCGAATGGATATGACGTTAACGGA
GAAGATAGTGAATCACGCGCCAACAATTGACCACAAAGGGAGCTTCCAAT
TAGCAAGCGGTGAGGCTTTATCGTATTAGTGCAATCATTATGCCGAGTTT
TTCATTCTTTCTTCATTGAAGAACATNGGTATTATTGCAATCATAATGCC
GAGGTTTTCACTCTTTCTTTATTGAAGAACATATTAAGTAGAAGACATGT
ATCTTTCTGATTTAATTAGCTGAATTAGAATTATTAGAAGGTAAAATGAG
GTATCTAATTGGTGGTAAGATGTTGTAAGATAAGTGTCAACCCCTTCTAT
TGTATTAGGGGTTAGCCTTTTTGAATAGGTATTTATCAGTATTCATTATC
TTTTCACGTGTTGCTAAGGCTTTCATTACTTCACTTGTTTCAACAATTAG
TGTGATTAAGTTATTCAACTGAtctttttaacaaagaaaaaacgAATCTG
ATTTTAATCAAGTTTTGCTTATCAAATAaaggttgaagtttaaaaactTG
ATTATAATCAGCAACGTTATGTATTTTTTGTCATACGGTTTCAAAAACTT
GCACTAAAATACAATTTAGTTAGAGAGACTACATTGACTTTCTATAAAGG
CATTCTTAATCTCAATTTTATGAGCATGCATATTGTTAATTTCTATAGAT
CAATTtgttgaattcatttgaaaAGATGATTAGAAAAAACAAGCTCATGG
TATTTCTCGTATAAAAAGGAGATAAACATCATAGAGAACATTgtgaaaaa
agatttcttaTCTTTCTTGACAGACACAAGAAAAATTACAGTGGTTTTGA
AGTGAGTAGTTGTGCAGAGGTTAACATAGTTGGTAAGTTTGTTGGCGATT
ACTGGCAGTTTTAAATATTGGTGAAAAAATGAGCAGAATCGAGCACAAGC
CACTAGGTAAGAAATTTGTTTGCTCAAAATATGTTATTCAGAGCTAGACA
AGAGAAAAAACTACTAGACAAATTAAAATAACAATGTAGACTAAAAAACG
GCAAACTTCattaaataagaacaaattaggAACCTGAACCTGGAATGGCT
GATTCTTAGGCAAAATTAAGGTAAAATTTGACTTAGATATCTCAACTTTG
CTCTAAAAAAAGGGTATGATAATAAGGGCTTAAAgtgtccaaaaaaaata
agCCAACATTAACAAAAGTTTActggttcttacaaaaaaaagcgtgaatt
agaaatttttaaatcttgtCGTCATTTTCCTTCCAGTTAACTCTGAAGAA
CTATCACTACCACCAGAGCTTACATCACCAGAACTTGACGTTATCGATTT
AAACGAAGACGAGCTTCTCGAAGATCTCGAAGAACAATCGAAATTATTCT
CGATTTGGAATCGTAAAACAATGCGATTGGAAGCAATAGTTGTTGCTGTT
CTGACCATGGTCAGCTCCACAGTTTACACTGTCAAAATGTATAATTGGTG
GCATGATAAAATGGAATTATATATCTACGCCTCTGAACTTGAAGCATGGC
GAATGAGACGCCTTTGCCAGACTTTAGTATGGTTCTCTGTTATTGGTAAT
ATCATGGTATTCGTCAGCTCCATTCCTGTCTTGTTTGCTGCATTGCCAAA
GAGTTTGACGGAACGCTGCCAGAGGCGTCACCATCTGTTACCATTCATCT
tcgttcaaattttcaccatgATCACAGCAATCAATCGTTTGATGTTAACT
TTCATTTTCTCAGAAAGTGCTACAAACGATAGTAATTTAGACTTTGCAAA
ATTATATGAGATCAGATCTTTAGATATTGTGANttcattttttcagaaag
tgctaCAAACGATAGTAATTTAGACTTTGCAAAATTATATGAGATCAGAT
CTTTAGATATTGTGACCAGTGCATTGGCCTTATTTTTGATTTGTGCTTTT
TACCGAGATTTAAAGAAATCCAAAGGACGTGTGGAGGATATCGAAGCATC
ACCAGTGATTATTAGAACTGTAAAAGTATTGGGAACTTTAACTAATGCTG
TGGAACGAAAAGCGATCCCATTTTGTGTCAATGGTGCTATGTAAATAATG
AAGTAGTTAATTTGTACAGAAGAACTTGGAAACCCTGGCGAAGAAGGCAA
AATCAAGGATGTGCTCTTGCCTTGTAACTCTAAGCTAAGTTAGGAATGGC
TTAGGTATATAGGCTTTggcttcaaaaaattgagattcTCATTCCCAGAT
TTTTTactcgaatgtttttttttaactcccAACCTAAGCTTATGAAATAT
ACAGAATATTTTCCAACTCGAGTAACCTTTTTCATTCGTCGAAAAATCGC
TCAAGgtatttgatttttataagaagTTTTCATGATGAATTATACTACTA
TACATCACCTTCCAATTATGAATTCCAAAAACATAATATGGCGTACAGTC
GACAATTAAGCTACGAAGAGAGAAAGGCATTGAATCGTGTCAAAAGTTAA
GAGGTGGTTTCCTGGCCGCGGTAATAGCTACAAAACGAACAGCTTCCTTC
CACAATCTCTTCaccaaaagtacttgaaatagAATGTATTGTTCCTTAGC
TCAGATAAATTGTAAATAGTTTCCTCACAAATATTGTATTTTGTACTTCG
AAAGtttcatataatttttcttCGTTGCCGTATTTATTTCATACATATAC
TGTACCTTATTTCGAtctgaaaatgttatttcttgttttttacagttttt
ttaaaaatcatgttAAAGAGATGTGCATATTATTGCAATTTTTAC

Coding sequence (CDS) from alignment at sc0000581:173395..176289+

>TCONS_00026692 ID=TCONS_00026692|Name=TCONS_00026692|organism=Clytia hemisphaerica|type=CDS|length=1230bp|location=Sequence derived from alignment at sc0000581:173395..176289+ (Clytia hemisphaerica)
ATGAGCAGAATCGAGCACAAGCCACTAGTTAACTCTGAAGAACTATCACT
ACCACCAGAGCTTACATCACCAGAACTTGACGTTATCGATTTAAACGAAG
ACGAGCTTCTCGAAGATCTCGAAGAACAATCGAAATTATTCTCGATTTGG
AATCGTAAAACAATGCGATTGGAAGCAATAGTTGTTGCTGTTCTGACCAT
GGTCAGCTCCACAGTTTACACTGTCAAAATGTATAATTGGTGGCATGATA
AAATGGAATTATATATCTACGCCTCTGAACTTGAAGCATGGCGAATGAGA
CGCCTTTGCCAGACTTTAGTATGGTTCTCTGTTATTGGTAATATCATGGT
ATTCGTCAGCTCCATTCCTGTCTTGTTTGCTGCATTGCCAAAGAGTTTGA
CGGAACGCTGCCAGAGGCGTCACCATCTGTTACCATTCATCTtcgttcaa
attttcaccatgATCACAGCAATCAATCGTTTGATGTTAACTTTCATTTT
CTCAGAAAGTGCTACAAACGATAGTAATTTAGACTTTGCAAAATTATATG
AGATCAGATCTTTAGATATTGTGANttcattttttcagaaagtgctaCAA
ACGATAGTAATTTAGATGAGCAGAATCGAGCACAAGCCACTAGTTAACTC
TGAAGAACTATCACTACCACCAGAGCTTACATCACCAGAACTTGACGTTA
TCGATTTAAACGAAGACGAGCTTCTCGAAGATCTCGAAGAACAATCGAAA
TTATTCTCGATTTGGAATCGTAAAACAATGCGATTGGAAGCAATAGTTGT
TGCTGTTCTGACCATGGTCAGCTCCACAGTTTACACTGTCAAAATGTATA
ATTGGTGGCATGATAAAATGGAATTATATATCTACGCCTCTGAACTTGAA
GCATGGCGAATGAGACGCCTTTGCCAGACTTTAGTATGGTTCTCTGTTAT
TGGTAATATCATGGTATTCGTCAGCTCCATTCCTGTCTTGTTTGCTGCAT
TGCCAAAGAGTTTGACGGAACGCTGCCAGAGGCGTCACCATCTGTTACCA
TTCATCTtcgttcaaattttcaccatgATCACAGCAATCAATCGTTTGAT
GTTAACTTTCATTTTCTCAGAAAGTGCTACAAACGATAGTAATTTAGACT
TTGCAAAATTATATGAGATCAGATCTTTAGATATTGTGANttcatttttt
cagaaagtgctaCAAACGATAGTAATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015010XLOC_015010Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026692-proteinTCONS_00026692-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026692-exon-sc0000581-1491911889:173395..173603TCONS_00026692-exon-sc0000581-1491911889:173395..173603Clytia hemisphaericaexon
TCONS_00026692-exon-sc0000581-1510915933:173395..173603TCONS_00026692-exon-sc0000581-1510915933:173395..173603Clytia hemisphaericaexon
TCONS_00026692-exon-sc0000581-1575043694:173395..173603TCONS_00026692-exon-sc0000581-1575043694:173395..173603Clytia hemisphaericaexon
TCONS_00026692-exon-sc0000581-1491911889:174318..174450TCONS_00026692-exon-sc0000581-1491911889:174318..174450Clytia hemisphaericaexon
TCONS_00026692-exon-sc0000581-1510915933:174318..174450TCONS_00026692-exon-sc0000581-1510915933:174318..174450Clytia hemisphaericaexon
TCONS_00026692-exon-sc0000581-1575043694:174318..174450TCONS_00026692-exon-sc0000581-1575043694:174318..174450Clytia hemisphaericaexon
TCONS_00026692-exon-sc0000581-1491911889:174781..176289TCONS_00026692-exon-sc0000581-1491911889:174781..176289Clytia hemisphaericaexon
TCONS_00026692-exon-sc0000581-1510915933:174781..176289TCONS_00026692-exon-sc0000581-1510915933:174781..176289Clytia hemisphaericaexon
TCONS_00026692-exon-sc0000581-1575043694:174781..176289TCONS_00026692-exon-sc0000581-1575043694:174781..176289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000581supercontigsc0000581:173395..176289 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.8615	46.6904	35.0323	36.7149	0.0291375	0.0920993	0.138892	0.0780176	0.109244	0.180422	0.0437804	0.158287	16.5971	28.0555	1.84033	4.42389	10.7213	10.2076	23.3126	18.8671	4.97189	4.46303	28.5886	25.811	6.58819	4.61689	6.31049	4.806	13.9812	16.5658
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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