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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026699 ID=TCONS_00026699|Name=TCONS_00026699|organism=Clytia hemisphaerica|type=transcript|length=5364bpRun BLAST on NCBI transcript from alignment at sc0000581:137717..166888- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026699 ID=TCONS_00026699|Name=TCONS_00026699|organism=Clytia hemisphaerica|type=transcript|length=29172bp|location=Sequence derived from alignment at sc0000581:137717..166888- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026699 vs. Swiss-Prot (Human)
Match: CO6A5 (Collagen alpha-5(VI) chain OS=Homo sapiens GN=COL6A5 PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.668e-34 Identity = 157/640 (24.53%), Postives = 272/640 (42.50%), Query Frame = 1
Query: 82 DLVFALDASGSVGEEGYEQIKRFAKGIIDQFQIAATKTHVAIVTFSEYGEVQLKLTDSFDKNEIFNRIDNLDYPGYRTATDDALRVLDQQVFSLSGGMRQGAAQVLIFLTDGKCTLCEQSVESAVAPIKERGVTIYTVGVTDKINKTELEVIASEPPRDHSFEVAEFDELAGIIVDVYTKACDVKIGKCRKPLTPFECTXXXXXXXXXXXXXXXTMKCCSSGCSNKCTFPLLNCLTAVDVAFALDSSKSVRDEAFIDMKNFAKDIVDSFVVSQKEARFASLIYSNDAEVSFDFVRHASADKIKRAIDALPHKKSDTRVDKALELAASDIFSLQGGVRSRRPM--VLIVFFDGDVSKDMGDLERFAAPLKEYGVKIVAVGVGPEVNTYQLAKIATSSNVIFKARDFDTLLPELYTIAEETCSEKPGECPVPTSQPCAISALSNVCESD--FDCNGASKCCQDKCGSSVCVGPTNVCKRKVDVAFAVHQNANPEEFQIMKHFVEQSLLRFEINQDRAHAALISYGKDPTVVFDFNDPQDVTRRLFK-EINLLQYNPGQGTLVDVLATACDRIFCKIGGTR-PDVPKMLVVLTAPHAPSNDVELNRRIKTLQQRGVDVLFLAVGDDVDVQTLQRVTSPNAQVI 1983
D++F +D+S S+G E + ++K F K ++ + QI A KT + +V FS+ + + +L F + EI + ID + T T AL + Q F+ S G R GA + LI +TDG + + V ++ + VTI++VGV + N+++LE I+ + F V FD L + + + C + C++ +T +DV F LD S S++ + M N +V V + +F +L YS+ + F +++ I + +T KAL+ A+ +F+ + G R ++ + +LIV DG+ S D L A L+ G+ I AVGVG + N +L +A + N +FD L + E C+E P C ++ E+D F C+G+ D+ +S +F M F+ + F+I R + +G + + + + +T+ +K +I + + G + L + GG R VP+ LVV+T+ P DV +KTL+ G+ VL L +G DV + L +T + ++I
Sbjct: 628 DIMFLVDSSWSIGNENFRKMKIFMKNLLTKIQIGADKTQIGVVQFSDKTKEEFQLNRYFTQQEISDAIDRMSLINEGTLTGKALNFVG-QYFTHSKGARLGAKKFLILITDG---VAQDDVRDPARILRGKDVTIFSVGVYNA-NRSQLEEISGDSSL--VFHVENFDHLKALERKLIFRVC--ALHDCKR-------------------------------------------ITLLDVVFVLDHSGSIKKQYQDHMINLTIHLVKKADVGRDRVQFGALKYSDQPNILFYLNTYSNRSAIIENLRKRRDTGGNTYTAKALK-HANALFTEEHGSRIKQNVKQMLIVITDGE-SHDHDQLNDTALELRNKGITIFAVGVG-KANQKELEGMAGNKNNTIYVDNFDKLKDVFTLVQERMCTEAPEVC--------------HLQEADVIFLCDGS-----DRVSNS--------------------------DFVTMTTFLSDLIDNFDIQSQRMKIGMAQFGSNYQSIIELKN--SLTKTQWKTQIQNVSKSGGFPRIDFALKKVSNMFNLHAGGRRNAGVPQTLVVITSGD-PRYDVA--DAVKTLKDLGICVLVLGIG-DVYKEHLLPITGNSEKII 1161 HSP 2 Score: 133.265 bits (334), Expect = 1.003e-30 Identity = 164/537 (30.54%), Postives = 226/537 (42.09%), Query Frame = 1
Query: 3439 PGYAGPRGPVTIADCGKECPVTKGFKGQQGDNGQPGDRGSAGPEGSKXXXXXXXXXXXXXXXXXXXVAGFPGKVGFKGRAGSDGDPGMAGVKGVMGPKGAVGEPGINGKAGDKGEPGQIGAKGPDADGFSVAERGEKGNPGSDGLNXXXXXXXXXXXXXXXXXXXXXXXXXXMGAKGNAGLSGEAGANGKDGKP---GQKGEEGET----VRGEPGL---TGDEGEEGIMGLFGEPGQKGKKGERGSEPNAEQKEQMKKLSPGEKGIQGPDGDAGEPGIEGPKGVIG-PGGLQXXXXXXXXXXXXXXXXXXXXXXQAGDDGDPGTAGVP--GRFGR------RGLPGDAGKPG------------------LPGDSVIKGQKGERGEAGPEGKRGVD-------ASAIGCINVER--------------IDIAFLIDSSRSVTQEDFQRQKEFIREIVSEFPVG----PEKSLVGVIKYGMGANVEIRFSDYTDEKMLLERVDRLQHSAATESR-LDEALQLAQDRLFTRE-AGARI 4857
PG GP G + K KG +G +G++G PG RG GP+G KG +AG PG G KG G G G G G+ G G G G G G+KG+PG G+ G E+G G+PG+ G N G+KG G G +G G G P G +G EG+ V GEPG TG G EG+ G G G G+KGE+GS Q +K G G+ G G G PG+ G KG G PG L GP GQ G G G +G+P G+ GR RG PGDAG+ G L +KG++G RG GP G+RG+ S I R ++ F +D+S VT+E F + ++ I IV++ + P + V ++ Y G + IR+SDY +K LL+++ ++++ TE R + A++ +F R AGA +
Sbjct: 1394 PGIPGPHGTRGL-QAMKGSQGLKGSRGHRGEDGNPGVRGDTGPQGDKG------------------IAGCPGAWGQKGLKGFSGPKGGHGDDGIDGLDGEEGCHGFPGIKGEKGDPGSQGSPGSRGAPGQYGEKGFPGDPGNPGQNNNIKGQK--------------------GSKGEQGRQGRSGQKGVQGSPSSRGSRGREGQRGLRGVSGEPGNPGPTGTLGAEGLQGPQGSQGNPGRKGEKGS--------QGQKGPQGSPGLMGAKGSTGRPGLLGKKGEPGLPGDL-------------------GPVGQTGQRGRQGDSGIPGYGQMGRKGVKGPRGFPGDAGQKGDIGNPGIPGGPGPKGFRGLALTVGLKGEEGSRGLPGPPGQRGIKGMAGQPVYSQCDLIRFLREHSPCWKEKCPAYPTELVFALDNSYDVTEESFNKTRDIITSIVNDLNIRENNCPVGARVAMVSYNSGTSYLIRWSDYNRKKQLLQQLSQIKYQDTTEPRDVGNAMRFVTRNVFKRTYAGANV 1864 HSP 3 Score: 120.939 bits (302), Expect = 5.302e-27 Identity = 165/692 (23.84%), Postives = 275/692 (39.74%), Query Frame = 1
Query: 43 KRNTQQGYC--TKDIDLVFALDASGSVGEEGYEQIKRFAKGIIDQFQIAATKTHVAIVTFSEYGEVQLKLTDSFDKNEIFNRIDNLDYPGYRTATDDALRVLDQQVFSLSGGMRQGAAQV---LIFLTDGKCTLCEQSVESAVAPIKERGVTIYTVGVTDKINKTELEVIASEPPRDHSFEVAEFDELAGIIVDVYTKACDVKIGKCRKPLTPFECTXXXXXXXXXXXXXXXTMKCCSSGCSNKCTFPLLNCLTAVDVAFALDSSKSVRDEAFIDMKNFAKDIVDSFVVSQKEARFASLIYSNDAEVSFDFVRHASADKIKRAIDALPHKKSDTRVDKALELAASDIFSLQGGVRSRRPMVLIVFFDGDVSKDMGDLERFAAPLKEYGVKIVAVGVGPEVNTYQLAKIATSSNVIFKARDFDTLLPELYTIAEETCSEKPGECPVPTSQPCAISALSNVCESDFDCNGASKCCQDKCGSSVCVGPTNVCKR--KVDVAFAV-HQNANPEEFQ-----IMKHFVEQSLLRFEINQDRAHAALISYGKDPTVVFDFNDPQDVTRRLFKEINLLQYNPGQGTLVDVLATACDRIFCKIGGTR--PDVPKMLVVLTAPHAPSNDVELNRRIKTLQQRGVDVLFLAVGDDVDVQTLQRVTSPNAQVIDRVLLADSFANLVQYGRDIPEFACSEAGSV 2073
+RN + C TK+ D+ F +D S S+ E+ +EQIKRF + + F I K V +V +S+ EV+ +TD + ++ I N+ T T AL + Q + GM+ ++V LI LTDG T ++ VE A ++ +T++ VG+ NK EL+ IA + R SF FD L I +V + C K GC + D+ F +DSS S+ +E F MK F K+++ + + + + +S+ + F R+ + +I AID + T KAL F+ G R LI+ DG D+ D R L+ V I +VGV N QL +I+ S+++F +FD L K + K VC + CKR +DV F + H + +++Q + H V+++ ++ +DR + Y P ++F N + R E + + G T + +F + G+R +V +ML+V+T + +D +LN L+ +G+ + + VG + Q+ A + + D+F L + E C+EA V
Sbjct: 427 QRNLDKTGCVDTKEADIHFLIDGSSSIQEKQFEQIKRFMLEVTEMFSIGPDKVRVGVVQYSDDTEVEFYITDYSNDIDLRKAIFNIKQLTGGTYTGKALDYILQII---KNGMKDRMSKVPCYLIVLTDGMST--DRVVEPA-KRLRAEQITVHAVGI-GAANKIELQEIAGKEERV-SFG-QNFDALKSIKNEVVREICAEK------------------------------------GCED----------MKADIMFLVDSSWSIGNENFRKMKIFMKNLLTKIQIGADKTQIGVVQFSDKTKEEFQLNRYFTQQEISDAIDRMSLINEGTLTGKALNFVGQ-YFTHSKGARLGAKKFLILITDGVAQDDVRDPARI---LRGKDVTIFSVGV-YNANRSQLEEISGDSSLVFHVENFDHL----------------------------------------------KALERKLIFRVCA--LHDCKRITLLDVVFVLDHSGSIKKQYQDHMINLTIHLVKKA----DVGRDRVQFGALKYSDQPNILFYLNTYSN--RSAIIENLRKRRDTGGNTYTAKALKHANALFTEEHGSRIKQNVKQMLIVITDGESHDHD-QLNDTALELRNKGITIFAVGVG-----KANQKELEGMAGNKNNTIYVDNFDKLKDVFTLVQERMCTEAPEV 998 The following BLAST results are available for this feature:
BLAST of TCONS_00026699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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