|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026705 ID=TCONS_00026705|Name=TCONS_00026705|organism=Clytia hemisphaerica|type=transcript|length=2523bpRun BLAST on NCBI transcript from alignment at sc0000581:195536..210726- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026705 ID=TCONS_00026705|Name=TCONS_00026705|organism=Clytia hemisphaerica|type=transcript|length=15191bp|location=Sequence derived from alignment at sc0000581:195536..210726- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026705 vs. Swiss-Prot (Human)
Match: TMCO3 (Transmembrane and coiled-coil domain-containing protein 3 OS=Homo sapiens GN=TMCO3 PE=1 SV=1) HSP 1 Score: 420.239 bits (1079), Expect = 1.601e-134 Identity = 244/648 (37.65%), Postives = 387/648 (59.72%), Query Frame = 3
Query: 180 GAPKPTKQTTVNNVCNKLKINSIFRRKTLIEGKLNHQLQNVINNKELDHVEKTHRVRIINIVHREINDSVALLYRAVHSLGSLLRGEHKTLHTLKEISKKRLEHLQTSMLSVEEDYRVLLEEEQNSEKHKAQQ-QAAGSKNVVKKFFNDLIGDISEAADKLETDLDDDAFEMEIHSKKHKKFDVETVVKVTGEQTSGGE-------ETNEGVVMLIDADSNHFVLSKPKDTTTTHIDHNLLKEIIFLTTLSFLFVIIGNLLNMPSNFACVVAGVMLGPSGGNYIKNIVQIETIGEFGVFFMLFSVGLEFSLDKLKKVLRKSLTGVIGIFTILVVMGLFWGSMLGFLPRQSIFVTLCLAFSSTPLITKLLQGHTATRDASSD-SFVNLLLAMLVIEDALLGILMATLPLIAGHSSSKSHSLAHVPLGSLHNRIHGAFGGPGEALFFTLFELCVGLTGIFLIAYVLSKYVAARFFRSLNFS--GSHESFVLGIMSAVFFMLLITEYFGVSMELGCFISGTIFSTMGEQTTKKVSQTVEPFRDFFASLFFASIGFHVFPTFVISELAIFIPITTMVILAKLFVASGVLHFVLPKEDN-TKWVIAAGLAQMSEFSFLLASRARRFGLIGREVFLIILSVTTLSLFFSPFLWK 2087
G + V + C KL + + R+K + KL + V + L EK +V I +E+N+S +++AV+ L L+G++K + +KE S++RLE L+ + + E +Y LL +EKH+ + + +N ++++ D+ +AAD+LE ++++ AF+ +K K + E V++V E+ + + E + G+ MLID+ +N ++L+KP+D+T DH+ +K+I+ + LS + + +P+ F ++ GV+LGPSG N IK+IVQ+ET+GEFGVFF LF VGLEFS +KL+KV + SL G + +++ GL WG +L P QS+F++ CL+ SSTPL+++ L G +A D D + +LL MLV +D LG+ MA +P + +S S S+ L RI G ++ L +FL+ V+ KY+ ++R L+ G+ E +LGI + +F ML +TE VSMELGCF++G + S+ G T++++ ++EP RDF A +FFASIG HVFPTFV EL + + +T V++ K +A+ VL +LP+ KW+++AGLAQ+SEFSF+L SRARR G+I REV+L+ILSVTTLSL +P LW+
Sbjct: 40 GVAAMQSRQWVRDSCRKL--SGLLRQKNAVLNKLKTAIGAVEKDVGLSDEEKLFQVHTFEIFQKELNESENSVFQAVYGLQRALQGDYKDVVNMKESSRQRLEALREAAIKEETEYMELL----AAEKHQVEALKNMQHQNQSLSMLDEILEDVRKAADRLEEEIEEHAFD---DNKSVKGVNFEAVLRVEEEEANSKQNITKREVEDDLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTAIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWKISLQGPCYMTLLMIAFGLLWGHLLRIKPTQSVFISTCLSLSSTPLVSRFLMG-SARGDKEGDIDYSTVLLGMLVTQDVQLGLFMAVMPTLIQAGASASSSIVVEVL-----RILVLIG-----------QILFSLAAVFLLCLVIKKYLIGPYYRKLHMESKGNKEILILGISAFIFLMLTVTELLDVSMELGCFLAGALVSSQGPVVTEEIATSIEPIRDFLAIVFFASIGLHVFPTFVAYELTVLVFLTLSVVVMKFLLAALVLSLILPRSSQYIKWIVSAGLAQVSEFSFVLGSRARRAGVISREVYLLILSVTTLSLLLAPVLWR 661 The following BLAST results are available for this feature:
BLAST of TCONS_00026705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.