TCONS_00026720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026720
Unique NameTCONS_00026720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026720 ID=TCONS_00026720|Name=TCONS_00026720|organism=Clytia hemisphaerica|type=transcript|length=635bp
ATTACCAAAGCCTTCTAAAATTCTATTAACCATAATgatgataaaatttc
tatcacCGAAGCAAATTAATTGTCCGAGATCAACAGATTTTACTGAAAAG
CATACATTCACGACCAAATTGAGTTCCACCACCATTTCCTCCAAAAAGTT
TGAATCTCTCTCATCTTCGGCTACCCATCAGCGAGGAAGTGTTCTTTTTA
CCAAANTTGAGTTCCGCCACCTTTTCTCCAAAAAGCTTTGTTTGATTTTC
TCATCTTCGGCTACCCATCAGTGAGGAAGTGTTCTTTTTACCAAGCCCTG
ATAAAGATGAACCACTTTTCGAATTCAAACATCCAAAAGATTTGCTACTG
CTACTACTTGATGAAGAAGGTTTGGAAATGGAACCACCAAATCCTGTTTT
TCCGCCATTtccttttttattcaaatcatCTCCCATGCGTTGTAATTGTG
AGGCGATTTTACTGCATTTGCTCAAATCTGATTTACTGAGAGGCATCTTT
CACTCTGCTGTTTCTTCTATAAAGTTAAATTTGCTCGTGATAGATATGTA
ccaaaactgcttgaaaattgTAGCGAAATATGTATCCAAGTAAAAACTTT
GTATTactttctctctctctttctGAGTGAGGTTT
Run BLAST on NCBI

transcript from alignment at sc0000581:193683..194317

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026720 ID=TCONS_00026720|Name=TCONS_00026720|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at sc0000581:193683..194317 (Clytia hemisphaerica)
AAACCTCACTCagaaagagagagagaaagtAATACAAAGTTTTTACTTGG
ATACATATTTCGCTAcaattttcaagcagttttggTACATATCTATCACG
AGCAAATTTAACTTTATAGAAGAAACAGCAGAGTGAAAGATGCCTCTCAG
TAAATCAGATTTGAGCAAATGCAGTAAAATCGCCTCACAATTACAACGCA
TGGGAGatgatttgaataaaaaaggaAATGGCGGAAAAACAGGATTTGGT
GGTTCCATTTCCAAACCTTCTTCATCAAGTAGTAGCAGTAGCAAATCTTT
TGGATGTTTGAATTCGAAAAGTGGTTCATCTTTATCAGGGCTTGGTAAAA
AGAACACTTCCTCACTGATGGGTAGCCGAAGATGAGAAAATCAAACAAAG
CTTTTTGGAGAAAAGGTGGCGGAACTCAANTTTGGTAAAAAGAACACTTC
CTCGCTGATGGGTAGCCGAAGATGAGAGAGATTCAAACTTTTTGGAGGAA
ATGGTGGTGGAACTCAATTTGGTCGTGAATGTATGCTTTTCAGTAAAATC
TGTTGATCTCGGACAATTAATTTGCTTCGgtgatagaaattttatcatcA
TTATGGTTAATAGAATTTTAGAAGGCTTTGGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015027XLOC_015027Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026720-exon-sc0000581-1491911889:193683..194317TCONS_00026720-exon-sc0000581-1491911889:193683..194317Clytia hemisphaericaexon
TCONS_00026720-exon-sc0000581-1510915933:193683..194317TCONS_00026720-exon-sc0000581-1510915933:193683..194317Clytia hemisphaericaexon
TCONS_00026720-exon-sc0000581-1575043694:193683..194317TCONS_00026720-exon-sc0000581-1575043694:193683..194317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000581supercontigsc0000581:193683..194317 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0832811	0	0	0	0.112309	0.177496	0.386299	0.601431	0.0701794	0.260785	0.3375	0.110929	1.29082	0.575206	4.81314	4.49091	1.04196	3.16433	2.62531	4.60663	0.207261	0	0.381954	0.390373	0.983567	0.87781	0.27311	0.243744	2.76805	4.05197
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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