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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026734 ID=TCONS_00026734|Name=TCONS_00026734|organism=Clytia hemisphaerica|type=transcript|length=4682bpRun BLAST on NCBI transcript from alignment at sc0000582:127401..152500+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026734 ID=TCONS_00026734|Name=TCONS_00026734|organism=Clytia hemisphaerica|type=transcript|length=25100bp|location=Sequence derived from alignment at sc0000582:127401..152500+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026734 vs. Swiss-Prot (Human)
Match: DYH9 (Dynein heavy chain 9, axonemal OS=Homo sapiens GN=DNAH9 PE=1 SV=3) HSP 1 Score: 206.453 bits (524), Expect = 4.296e-61 Identity = 215/985 (21.83%), Postives = 418/985 (42.44%), Query Frame = 1
Query: 1177 DESLTTKLNQMAEIERSSKLIGVVGKNQHLSWQCIQGFLKSYQKFKKNTQVYVVSPAACTRQQIFGYFENNSSIWHDG---SLIRAINKNNVDRPHFIIIDGKINEELASYFTEILSAKGFTTLDNGNRLVIPHNIRFILQLEQVEDIPSNIISNVPVVSTDGLYPSWKIFLKIWATTK-LQLTRDHIVELCSQYIEATLDHMTHKFECLTAEERACKEYQLVYNMLNIFDGLSGHVTISSDC-----DNYMNFAAFWTFFGLLQPNE----RHEFSKWWTEKWSSEIYLPEESEMWNFIVNPETHIF--------QSVYDFMNTEESCNFVQEGIYLSISYLVTALIDNGTSIILSGAYGSGKASLFRDEYLHNKPEGTDISVLLIQANEFLTCESLWERLNQVLEWKHSDYYEPIGNKKLVCFIKDLHNLQHHPEPVLYLLQQ---LIKHNSAYNP-YRKQTQSLGEITFVLTTTQENDYL-------RDMVNF-IPVIKFPEVCVDDQERIFNTILSFHFMSPQDRSFMDLMAVKTPNVEDYAHMKRMENVTAMKKLLNKIVSITIELQNVMKTMYLRTPQRFHYVFTMRTLKRLFTQ-LCRSLPSDAAPRDILTTWYYELHWTYHYVLIDDVDKERWRHTFKTIAKKELAKEQMEILEDEVPIL----SNIVVDKETQTVVRWENQESPMNNKFSIQQLQTYLKNHLMEFNKDNPKLKIYFFEDRVRIMYRLLQILQSNFSNGHALLIMEGSPDIPPMLFRLLSDILQIELFTVNPSSVANDRVYDMEMFKSDLVSCLIKAGIKKQKVIFTLTSLELFDDGIITLVDELLQKGTMAHVFNEEDKNSVINTIRTSGDQEQARLSKAEAWNEFVKNIHENLHVLLSLSFTDEKFQEISLRHPNLITAMQVVYSKIWDQQKLVQVAQYVLSELTDLKESKKQDIAYLLAALHIELQKQDGGEVAG--RHNNITNANFELFIERF 4011
+++ K+ Q+ E+ + VVG Q ++ K+YQ K+ ++P A T ++FG + W DG S++R + D P +I++DG I+ ++ TL + R+ + ++ + ++ + +S ++ + W + W + +Q R ++ L +Y+ LD + +F+ + E +V + ++ + L I +DC ++Y FAA W F G + ++ R EFSKWW ++ + + P + ++++ ++PET F Q +D ++C V + + Y + L+ ++L G G+GK+ L + PE + + N + T L L + LE K Y P GNKKL+ FI D++ PE Y Q +I+ + Y Y + SL EIT V + N R +F + V+ FP D I++ IL+ H+K +++K + ++ + + + T +L T +FHY+F +R +F L S+ + D++ + +E + Y ++++ D + + + KK + + + + P L +N + + + V WE Q L L+NH N+ N + + FED +R + + +IL+S G+ALL+ G L RL + I +++F + + Y ++ FK DL S +KAG+K +F +T ++ D+ + L+++LL G + ++++++ ++I+ +R + ++ W F+ I L V L S K + S + P ++ + + W QQ L V+ L ++ + KQ I+ +A +H + + ++ R+N T +F FI +
Sbjct: 2127 EDNFVLKVVQLEELLAVRHSVFVVGGAGTGKSQVLRSLHKTYQIMKRRPVWTDLNPKAVTNDELFGIINPATGEWKDGLFSSIMRELANITHDGPKWILLDGDIDPMWIESLNTVMDDNKVLTLASNERIPLNPTMKLLFEISHLRTATPATVSRAGILYINPADLGWNPPVSSWIEKREIQTERANLTILFDKYLPTCLDTLRTRFKKIIP----IPEQSMVQMVCHLLECLLTTEDIPADCPKEIYEHYFVFAAIWAFGGAMVQDQLVDYRAEFSKWWLTEFKT-VKFPSQGTIFDYYIDPETKKFEPWSKLVPQFEFDPEMPLQAC-LVHTSETIRVCYFMERLMARQRPVMLVGTAGTGKSVLVGAKLASLDPEAYLVKN--VPFNYYTTSAMLQAVLEKPLEKKAGRNYGPPGNKKLIYFIDDMN----MPEVDAYGTVQPHTIIRQHLDYGHWYDRSKLSLKEITNVQYVSCMNPTAGSFTINPRLQRHFSVFVLSFP--GADALSSIYSIILT-------------------------QHLKLGNFPASLQKSIPPLIDLALAFHQKIATTFLPTGIKFHYIFNLRDFANIFQGILFSSVECVKSTWDLIRLYLHESNRVYRDKMVEEKDFDLFDKIQTEVLKKTFDDIEDPVEQTQSPNLYCHFANGIGEPKYMPVQSWE---------LLTQTLVEALENH----NEVNTVMDLVLFEDAMRHVCHINRILES--PRGNALLVGVGGSG-KQSLTRLAAFISSMDVFQITLR-----KGYQIQDFKMDLASLCLKAGVKNLNTVFLMTDAQVADERFLVLINDLLASGEIPDLYSDDEVENIISNVRNEVKSQGLVDNRENCWKFFIDRIRRQLKVTLCFSPVGNKLRVRSRKFPAIVNCTAIHWFHEWPQQALESVSLRFLQNTEGIEPTVKQSISKFMAFVHTSVNQTSQSYLSNEQRYNYTTPKSFLEFIRLY 3051 HSP 2 Score: 49.6766 bits (117), Expect = 4.296e-61 Identity = 38/188 (20.21%), Postives = 89/188 (47.34%), Query Frame = 2
Query: 4130 NTLRTVEESSSTGLSLVKKLDHEKRVITQKQQGCTTLLTQIGQDRAITEEHTRXXXXXXXXXXXXXXXIPQYEEAHKRAIFKAAAIVRETKSILQSLDDRELSDIRSMQKPDTEIEDLLAAIIIVVKSPSA----DLTWNRGAKRIMANIERFKEDLSGFDDVELPDATLQVLRPYVNKPHFAPGYLS 4681
N L + +S+ L KL ++ + QK + L+ +G + + + + K + + Q ++ + + KA + ++ L +L+ L++++S P + ++ AA+++++ +P D +W + AK MA ++ F + L F+ + + L+ +RPY+ P F P +++
Sbjct: 3071 NGLLKLHSTSAQVDDLKAKLAAQEVELKQKNEDADKLIQVVGVETDKVSREKAMADEEEQKVAVIMLEVKQKQKDCEEDLAKAEPALTAAQAALNTLNKTNLTELKSFGSPPLAVSNVSAAVMVLM-APRGRVPKDRSW-KAAKVTMAKVDGFLDSLINFNKENIHENCLKAIRPYLQDPEFNPEFVA 3256 The following BLAST results are available for this feature:
BLAST of TCONS_00026734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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