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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026748 ID=TCONS_00026748|Name=TCONS_00026748|organism=Clytia hemisphaerica|type=transcript|length=1412bpRun BLAST on NCBI protein sequence of TCONS_00026748-protein >TCONS_00026748-protein ID=TCONS_00026748-protein|Name=TCONS_00026748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp MLLVISFIACIIGTIQSYPTKQSHVPYFHKGRPKGGFLGDPYIDPRQNFKRun BLAST on NCBI transcript from alignment at sc0000582:4811..17504- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026748 ID=TCONS_00026748|Name=TCONS_00026748|organism=Clytia hemisphaerica|type=transcript|length=12694bp|location=Sequence derived from alignment at sc0000582:4811..17504- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000582:4811..17504- >TCONS_00026748 ID=TCONS_00026748|Name=TCONS_00026748|organism=Clytia hemisphaerica|type=CDS|length=12177bp|location=Sequence derived from alignment at sc0000582:4811..17504- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026748 vs. Swiss-Prot (Human)
Match: TSSP (Thymus-specific serine protease OS=Homo sapiens GN=PRSS16 PE=2 SV=2) HSP 1 Score: 238.039 bits (606), Expect = 2.041e-71 Identity = 145/418 (34.69%), Postives = 221/418 (52.87%), Query Frame = 2
Query: 209 AAEPQ--WYTQQLNHFDDQDTRTWQQKYYVNATQF-GENGPVFLMIGGEGPLSARWVGVGSMVEMAKEHKALVLALEHRYYGDSHPTSDTSVENLKYLSSEQALADLATFRASMVEQFALSDKNKWISFGGSYPGALSAWFRYKFPHLVHGAVASSAPINAQTDFPEYLEVSTDSL------GTQECKDSVQAATTSVEKYVQT-EAGRKMLTDLFHLCEPLSDDPNDISQFTSSMAGNFFGVIQYNKDNRAFEGATGTNITVDTLCNIM---------SLPIFGDEMHRYAKINEIMMETYKQTCISPNYKKFIEEMKVIDWK-SVEGGRQWTYQTCTEFGYYQSSDSKSQVYGTTFPLSFWTKQCVDIFGANFNETSINRAVDWTNDNYGGYNMNQPRIVFPNGSIDPWHALSFTD 1402
AA P+ W Q L+ F+ D R++ Q+Y+VN + G++GP+FL +GGEG L V G +A ALV++LEHR+YG S P + L++LSS ALAD+ + R ++ F +S + WI FGGSY G+L+AW R KFPHL+ +VASSAP+ A DF EY +V + SL G+ EC+ +V A VE+ +++ A + L C PL N ++ ++ GV+QY+ G TG ++V LC ++ S P G + +I++ + Q C+S + + + +++ + + S G RQW YQTCTEFG+Y + ++ + L C +FG + S+ +AV TN YGG +++F NG DPWH LS T
Sbjct: 54 AALPKVGWLEQLLDPFNVSDRRSFLQRYWVNDQHWVGQDGPIFLHLGGEGSLGPGSVMRGHPAALAPAWGALVISLEHRFYGLSIPAGGLEMAQLRFLSSRLALADVVSARLALSRLFNISSSSPWICFGGSYAGSLAAWARLKFPHLIFASVASSAPVRAVLDFSEYNDVVSRSLMSTAIGGSLECRAAVSVAFAEVERRLRSGGAAQAALRTELSACGPLGRAENQ-AELLGALQALVGGVVQYD-------GQTGAPLSVRQLCGLLLGGGGNRSHSTPYCG-----LRRAVQIVLHSLGQKCLSFSRAETVAQLRSTEPQLSGVGDRQWLYQTCTEFGFYVTCENPRCPFSQLPALPSQLDLCEQVFG--LSALSVAQAVAQTNSYYGGQTPGANKVLFVNGDTDPWHVLSVTQ 456 The following BLAST results are available for this feature:
BLAST of TCONS_00026748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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