TCONS_00026763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026763
Unique NameTCONS_00026763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026763 ID=TCONS_00026763|Name=TCONS_00026763|organism=Clytia hemisphaerica|type=transcript|length=373bp
CGAAATTTACTTAATCGCTTTATAGAGTAAATCCTTTCTCTTTGAGAAGT
ACAATCTCTTCTTCTGTAAGAGGATTTACATTTTCCGCCAACACAATAGG
ACCATTCGATTTTTCGGCACATTCGATATGATAATGAACGTCAGCCAAAA
CAAAGTCGCTTTCGTCGGCTGATGACCAATGTTTAGACCGTTTCGGTCTG
CGCTCCTTCTTCATAAAGATTAGGTTATGTGGTGACGTTAAAGGCAAGTC
GGAGATCTGCCCTTTCGTGCATCCTTTTCTTTTCTTCCCGCAAACTTTGA
TCTTTTTGTTCATTCGTCGTTTCAAAAGAAGCTGTCCGGGTTTTAACGAA
TGTTTAACTGCTACTTTTATTTC
Run BLAST on NCBI

protein sequence of TCONS_00026763-protein

>TCONS_00026763-protein ID=TCONS_00026763-protein|Name=TCONS_00026763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
EIKVAVKHSLKPGQLLLKRRMNKKIKVCGKKRKGCTKGQISDLPLTSPHN
LIFMKKERRPKRSKHWSSADESDFVLADVHYHIECAEKSNGPIVLAENVN
PLTEEEIVLLKEKGFTL
Run BLAST on NCBI

transcript from alignment at sc0000582:208815..209187

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026763 ID=TCONS_00026763|Name=TCONS_00026763|organism=Clytia hemisphaerica|type=transcript|length=373bp|location=Sequence derived from alignment at sc0000582:208815..209187 (Clytia hemisphaerica)
GAAATAAAAGTAGCAGTTAAACATTCGTTAAAACCCGGACAGCTTCTTTT
GAAACGACGAATGAACAAAAAGATCAAAGTTTGCGGGAAGAAAAGAAAAG
GATGCACGAAAGGGCAGATCTCCGACTTGCCTTTAACGTCACCACATAAC
CTAATCTTTATGAAGAAGGAGCGCAGACCGAAACGGTCTAAACATTGGTC
ATCAGCCGACGAAAGCGACTTTGTTTTGGCTGACGTTCATTATCATATCG
AATGTGCCGAAAAATCGAATGGTCCTATTGTGTTGGCGGAAAATGTAAAT
CCTCTTACAGAAGAAGAGATTGTACTTCTCAAAGAGAAAGGATTTACTCT
ATAAAGCGATTAAGTAAATTTCG

Coding sequence (CDS) from alignment at sc0000582:208815..209187

>TCONS_00026763 ID=TCONS_00026763|Name=TCONS_00026763|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000582:208815..209187 (Clytia hemisphaerica)
GAAATAAAAGTAGCAGTTAAACATTCGTTAAAACCCGGACAGCTTCTTTT
GAAACGACGAATGAACAAAAAGATCAAAGTTTGCGGGAAGAAAAGAAAAG
GATGCACGAAAGGGCAGATCTCCGACTTGCCTTTAACGTCACCACATAAC
CTAATCTTTATGAAGAAGGAGCGCAGACCGAAACGGTCTAAACATTGGTC
ATCAGCCGACGAAAGCGACTTTGTTTTGGCTGACGTTCATTATCATATCG
AATGTGCCGAAAAATCGAATGGTCCTATTGTGTTGGCGGAAAATGTAAAT
CCTCTTACAGAAGAAGAGATTGTACTTCTCAAAGAGAAAGGATTTACTCT
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015038XLOC_015038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026763-exon-sc0000582-1491911889:208815..209187TCONS_00026763-exon-sc0000582-1491911889:208815..209187Clytia hemisphaericaexon
TCONS_00026763-exon-sc0000582-1510915933:208815..209187TCONS_00026763-exon-sc0000582-1510915933:208815..209187Clytia hemisphaericaexon
TCONS_00026763-exon-sc0000582-1575043694:208815..209187TCONS_00026763-exon-sc0000582-1575043694:208815..209187Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026763-proteinTCONS_00026763-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000582supercontigsc0000582:208815..209187 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.243753	0.729493	0.777354	0	0.559051	1.73	0.882743	1.51134	0.591732	1.28459	1.13715	0.286771	1.84595	0.887112	1.18507	2.16459	3.66791	1.49891	1.17324	0.687668	0.150574	0	0.235666	0.0596935	3.0307	2.49924	0.540149	0.381599	0.177404	0.489262
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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