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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026769 ID=TCONS_00026769|Name=TCONS_00026769|organism=Clytia hemisphaerica|type=transcript|length=1379bp
GTGGagacaaagtttttttctcCTCCTGAAATATCAGACCAACTCTGACA
TTTTCAGACGCTGTTGTTTCATTGATTGTTGCTATTTACAGATTTATTGA
TATACAATCATTATTTTTCGTGATTATTCATCCTTTTACTGTGTTGTTTG
CTGCTTGCTCATTTGTAAAACAAgaggtatgtattttttttggaataaaa
tttttcagatCGAGTGTAGACAGTCAGTTCCGCTAAAGAATCCTGCAAGT
GCTATAAATAGATTTTTCTTCCCGATGTTAACCGATTCGGATTTATATCG
GTAATTATCCCCGATACCCAACGGCGGGAatctaaaaatggtagaaaagc
tCCGGTGactatgaaatatttttctgaaaagtaaTACTGGTACATCTTGA
AACCCTTGAACTTTGTTAGCCAGTACCTGCTGTGCAGCCACCTAATCAGC
ATCTAACAGCAAACAAATTGAAGAATTCTATCAGCATTCATCAATTATTT
ATCCAAGATCAGggGTTGGATGTTCAAGCATTGTCCACCATATGAAATGA
TAAACAACAGAAAGTGGCAGTATCCTATTCATTCAAAAAACGGTTTGTGG
TGCCAAAGATATTTATTGAATGAGAAATGCATGCAGCAAAGAGGGTGAAA
TATTGACAACAAGTATTGAGAAAGCGAAATCTTTACTTCAGAAGAAATAA
CATCCACCTTTTTTTTCCGTATCTTTACTTCAGAAGTATCATTATATATC
TTCGTTTTACGTACCAATCATTTTAAATCCTATCCCGAGCAAGGAGATAA
CGATGAGTGAGACAAGAAGAATAAAGTAACAGATCAGAAAGGACACTGAG
ATGAgatgcttttaaaattgcattgGTGAGATTTATAAGCACCTTTAAAA
GCTTAAATAAACTTAACCATCACTTAAGGCAACTTTTCAGAAATCGATAG
AAAGTGGAGCACCAAATTATTCGTTCCCGCTGTCAAGCATGTTatgttgg
aaaaaatctactGTAATCAATTACATTTTTAAGAACACAAGAGATGAAAC
ATTCCAGTGGAAATGCACTTACAATTGATGACGtacaaatttttgcaaaa
tcgaACAAATCAGAGTAACATTTATGGCCCTAGAGGCACTTTATATAAAA
GTCATTGAACTTTCAATTAACATTTAAGACGTGTCATTAGTCATtaatgt
tattgtttttatagcatttttactgtttttaactTATCATTTTGTATCAT
TTATACCTGATGACTATGTTAAGACATCAAAATATATTattgtcaaaatt
aaattttgatcaaagcaccaaaatttcttcaaaagttcacaatatttttt
accaaagaGATTAAAATGATATAAATAAG Run BLAST on NCBI transcript from alignment at sc0000587:168436..171225+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026769 ID=TCONS_00026769|Name=TCONS_00026769|organism=Clytia hemisphaerica|type=transcript|length=2790bp|location=Sequence derived from alignment at sc0000587:168436..171225+ (Clytia hemisphaerica)
GTGGagacaaagtttttttctcCTCCTGAAATATCAGACCAACTCTGACA
TTTTCAGACGCTGTTGTTTCATTGATTGTTGCTATTTACAGATTTATTGA
TATACAATCATTATTTTTCGTGATTATTCATCCTTTTACTGTGTTGTTTG
CTGCTTGCTCATTTGTAAAACAAgaggtatgtattttttttggaataaaa
tttttcagatCGAGTGTAGACAGTCAGTTCCGCTAAAGAATCCTGCAAGT
GCTATAAATAGATTTTTCTTCCCGATGTTAACCGATTCGGATTTATATCG
GTAATTATCCCCGATACCCAACGGCGGGAatctaaaaatggtagaaaagc
tCCGGTGactatgaaatatttttctgaaaagtaaTACTGGTACATCTTGA
AACCCTTGAACTTTGTTAGCCAGTACCTGCTGTGCAGCCACCTAATCAGC
ATCTAACAGCAAACAAATTGAAGAATTCTATCAGCATTCATCAATTATTT
ATCCAAGATCAGGTATGATTCAGTTTCCCACTCACTCTGTCAGTCATTGA
TAACATAACAAAATGATGGCAAAAATCCTTTTCAGTCCTTTTCTAGGTGG
ACCCTGCCCTTCCTTCCATCTTGGGGAATGTTAGTCATATTAAGAACCAG
CTAAAAAGTTTGTTAAAGATTAAGGGATGCTCTTTGCTTACAAGCGAAGT
AAATTATATAAAGTGCTGGAGTTTTTGGCTGAATGTCAAATGAAATGTGC
CCGTCTATTGAGTGACTACTAGCTAGCAGCACAAATACTAATCTCTACAA
TCTATGTAAATCATTTTTTCTCTATGCAATAGCTGTGTTGAAAGAGAAAA
ATCAATTACATGGAATAtatcatttataaaaaaatttatgttgATAATAA
TTAGCTCATTCTCATTCAATAGACCGTTGTAATTGCCTTACAAGCTACAT
AAAAAACTATTATTTACTTGAGACTTGACTTTTAAAGCAAAGAATCTAGC
ACGATATCTAAAGGGATTAATGAAAACTAAATGGTACTTTTTAATacagt
aatttttttattataaagcaCTCTGGGCAATCTTATTGTATATatatggg
ctcttccagaaaaatttgtcgacatctgtcttctaatttcgacacccttc
tttagagataggaacaatagaaactgaggaaggtcagaattgctgattga
ctttgattagcgcgatgagaggaaaaatctttagactatcagtgatttcg
accttcttattattcctatctataaagaaggatgtcgaaataaGAAGaca
gatgtcgacattagaccaacttacggtagggGGTGGACGCCaggaatttt
cagataaaaaaagcactcggaaatccagtcaatttttcaaaatgcttCGG
AAATTtcactcaattttttatttgaacccTTGCAAATTTCACATACTgta
atttgtcaaaattttgaaaaaagtatctgaaattccagatttttctgcca
aaaatttgattttgtattggaaatccagGAGTTTTAATAGATGTATTGGC
GAATGCGCCAGTCTTttaaataactaattactctacatacattactttcc
ctcagccaataaaaacatgataaattatcttgtctctaggtaactgttgt
ggagtaattagttattcaaaagaggGTAGCCTAAGCCAAAAGCTATtgct
tttgtattggaaatccaggaatttcaaaaaaacattttgcctcAGAATTT
TGctgtcgtccacccccctgtaatGGACTTTAACTGGAATTGAGCCCAAG
AACAAATTTTAGCTGTTGGTTGTTTGCATGACATTGTTCTCCCAAGAAAT
GAAATTCCAGAAGGGggctataattttttttgcaattttgcaagAAGTTT
GatttgagttgttttttttcaagggGTTGGATGTTCAAGCATTGTCCACC
ATATGAAATGATAAACAACAGAAAGTGGCAGTATCCTATTCATTCAAAAA
ACGGTTTGTGGTGCCAAAGATATTTATTGAATGAGAAATGCATGCAGCAA
AGAGGGTGAAATATTGACAACAAGTATTGAGAAAGCGAAATCTTTACTTC
AGAAGAAATAACATCCACCTTTTTTTTCCGTATCTTTACTTCAGAAGTAT
CATTATATATCTTCGTTTTACGTACCAATCATTTTAAATCCTATCCCGAG
CAAGGAGATAACGATGAGTGAGACAAGAAGAATAAAGTAACAGATCAGAA
AGGACACTGAGATGAgatgcttttaaaattgcattgGTGAGATTTATAAG
CACCTTTAAAAGCTTAAATAAACTTAACCATCACTTAAGGCAACTTTTCA
GAAATCGATAGAAAGTGGAGCACCAAATTATTCGTTCCCGCTGTCAAGCA
TGTTatgttggaaaaaatctactGTAATCAATTACATTTTTAAGAACACA
AGAGATGAAACATTCCAGTGGAAATGCACTTACAATTGATGACGtacaaa
tttttgcaaaatcgaACAAATCAGAGTAACATTTATGGCCCTAGAGGCAC
TTTATATAAAAGTCATTGAACTTTCAATTAACATTTAAGACGTGTCATTA
GTCATtaatgttattgtttttatagcatttttactgtttttaactTATCA
TTTTGTATCATTTATACCTGATGACTATGTTAAGACATCAAAATATATTa
ttgtcaaaattaaattttgatcaaagcaccaaaatttcttcaaaagttca
caatattttttaccaaagaGATTAAAATGATATAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026769-exon-sc0000587-1491911889:168436..168947 | TCONS_00026769-exon-sc0000587-1491911889:168436..168947 | Clytia hemisphaerica | exon |
| TCONS_00026769-exon-sc0000587-1510915933:168436..168947 | TCONS_00026769-exon-sc0000587-1510915933:168436..168947 | Clytia hemisphaerica | exon |
| TCONS_00026769-exon-sc0000587-1575043694:168436..168947 | TCONS_00026769-exon-sc0000587-1575043694:168436..168947 | Clytia hemisphaerica | exon |
| TCONS_00026769-exon-sc0000587-1491911889:170359..171225 | TCONS_00026769-exon-sc0000587-1491911889:170359..171225 | Clytia hemisphaerica | exon |
| TCONS_00026769-exon-sc0000587-1510915933:170359..171225 | TCONS_00026769-exon-sc0000587-1510915933:170359..171225 | Clytia hemisphaerica | exon |
| TCONS_00026769-exon-sc0000587-1575043694:170359..171225 | TCONS_00026769-exon-sc0000587-1575043694:170359..171225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000587 | supercontig | sc0000587:168436..171225 + |
Blast
The following BLAST results are available for this feature:
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