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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026785 ID=TCONS_00026785|Name=TCONS_00026785|organism=Clytia hemisphaerica|type=transcript|length=488bp
atttaaaaaggaCTTGTTATATTACTGGCTGGGGAACAACATCTTCTGGT
GCAGATTATATTCCTGATGTTCTTCAAGAAACATGGGTAAAAGTACACAG
tgacaaaaaatgtaaaagattaTACAGTGCCAGCGAAATCACAGACCGAA
TGTTTTGCGCTAATCGAGGCAACAGGAAAGTTCGTGATACATGCCAAGGA
GACTCAGGTGGTCCATTAGCATGCAAGGATGCATCCACTAACACATGGTA
TGCCTGGGGAATCACATCTTGGGGAGACGGTTGTGCCATAAGAGGAAAAC
CTGGAGTCTACGCATCTGTCGTTGAGATGTTAGATTGGATTGGAACCTGC
ACAGGAATAACAGCATCAAAATAGATATAGAGTCTTCCACTCAATAAATA
ACctaaatgaaacaatagatggTATGGTGGCCTCTATCTGCCATGtattt
tattatgtttttataGCAGTAAAGATGTACTATTTTAC Run BLAST on NCBI transcript from alignment at sc0000587:100905..104148- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026785 ID=TCONS_00026785|Name=TCONS_00026785|organism=Clytia hemisphaerica|type=transcript|length=3244bp|location=Sequence derived from alignment at sc0000587:100905..104148- (Clytia hemisphaerica)
ATTTAAAAAGGACTTGTTATATTACTGGCTGGGGAACAACATCTTCTGGT
GCAGATTATATTCCTGATGTAAGTTTTTCTCCTTGTTTTTTTTTAAATAC
ACGCTTTTTTTTATAAGAACATCCAAACTTTTTGAGCTTTCAATCCAAAA
AAAGTTCTAAAGTTTTTATTTTCACTATTTTGTGAGTATTTTTTATGGAA
TTTTCTTACAAAATGTTCTTAATCTTTGCTATCGAAGCCTTACGTTATAA
ATCATATAAAGTCTGATCTCGTCATTCAAAGACTTCTGTTCTTGTATAGT
TTGCAGTTGTTATAAAAAGACGTGTAGTGCACTACAATAATTGCTCTAAT
TTAGTGTGTCCTCGAATTGCGGATAAATTATATTGACAATTTCGGACCAA
TTTAAATCCTCTAATTATTAGTGCGGGTAGTGTTTCACCCATTTATGATT
TCCCTATTTAAATATTTAGTACGGCATAGTTCAAATTTTTCTCAGTAAAA
AAGTTGTCAGATTGAAGCAATTCGTCTCCTCCTGTCATTAGTGCGGCACC
TCCAAAATAATTATTTTTCCGGCTGCACTAAATTTTGTAAAGAAATTACG
GTACTAAGATGTCTTCATTGGTTTACAGGTTCTTCAAGAAACATGGGTAA
AAGTACACAGTGACAAAAAATGTAAAAGATTATACAGTGCCAGCGAAATC
ACAGACCGAATGTTTTGCGCTAATCGAGGCAACAGGAAAGTTCGTGATAC
ATGCCAAGGAGACTCAGGTATGTTAGTCCCTTCACTTCTTTTGTTCTATT
AGCCGCAATATTTTCGTATCTTGTCGTATCGGGTTAAAATTGAGGCTTTG
TGACCAGACTTTTATTGATTCAAATTAATCCTTAAATACACTCTTCTCGA
GATGCATAAATTTATTGTTGTCCTCGTTTTCAAGCAGATTTCATTGCTTT
GACGAGAGTATATCAAGTCTAAGGAAATAATGATATAGAAAACCTGAAAG
GTTTTATTTTCATAAGTGTTCCCATTTCATACCAGACACATGTTTCATAT
CAGGTCAGTATCTCCCTATTGTTAAATTTTGTTGAATAAGAAAGAAATTT
CACTCTTAGCCAAAGTGAATTATTACTTACTATTTTTACAAGACAATACG
TCGAAAAAGCATTCATATAACGTTCATAACATCCATATGGACACCCCTGT
GTCACAGACCCGGTAGACCCCCCACCCCAGTGGAAAAATTGTCCAAAAAA
TCGTCCCCGGTGGAAAAAATATCCTACAATTTCAACCCCACTGCGAAATT
GCTCTATGATTTTATCCCCATTGAAAACTGAATGTAAAAAAATGCACTCC
AAAACCATCCCCACTGGAATTTTCGAGCTGGAAACAATAGATTTTCTATC
CCCAATGGGATTTTGATAGGAATTTTCATCGCCACTGAGGGAAAAAGTTC
TACCGGGGCACTGAGACAGGGGTGTATATGGACAAAGTCACGACGTAATC
TTTTATTCGTAAAGAAGTAAGAGTAACACACAAAAACACCGGTATTTGAA
TATCGACATTAAACTAGCAGATAGTGCTATGCTATTCACTTTTAATGGCT
ACTTAGACTACACAATATATTGGTGGGCAATATTCGACAGTATAGTTTTG
GACCGTAATGTACGTACCATGAAAAGCACAAGCCAAAATCATATATTAAC
ACAACTTAAAAATATCATCAATGCTTTTCAAAAAAAAGTCAGTGATAGAG
AATCATAACATAAAGATCTGCATATTATTTCGATTCCATTAAAGCCATTA
AAGTAACATTACTAAAACTAATAGTTTAGTAATTACTGTTATACATTTGG
GATCATGTAAAAGATTTTTTTCGAAAGAAACTCATTTCAATTACATTTGG
AGGTTTCTGGGGAATTTATAGATAGTAAACTGCATACTGATACAGTCTGC
TAGACATTAATATGGTAATATTTGCTCTTCATCTTTGATTCTTTCTACAG
TGATTAGATTGACACATGCGCGATAAAATTTCTATCATTGGTCCTCAGAG
ATTGATTATATTCTTTGAAAACTCAACCTCTGATAGTCAGGGTATAATGT
ACAAAGTAAATAACATGAACTAACTATTACAAAAAGGAATTTTCTTTCTT
TTCTTTCTGTAAACAATTCCATCCTATATTGTTGGAAATTGCAAATCAAG
CTGACAATATATTGTGTACACCTTTTCAATATATTGCCGGCGATCAACAA
TATATTATCAATATATTGCGTACAGTGTATGTAGCCCTTTACTCTTAGGT
GCCAAATAAACGGGCCCCCCTGCTTGTTAATTTTTCGATTTTTTTCCAAC
CCCCCAGACCTTATTAAGACCCCCCCGTTTATTAATTTTTGAAAAAATTC
CCAGCTACAAAAAGGAAAATTCCTTGTTTTACTCTAAAAAGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACCATTAATGA
TAACACCCCCTTCTCATAGAGCCACTGGGAACCCTTCCCACTGAAAGAAT
TGGCTGAAATATAGTCCCGGTGGAAATTTATAATTCAATTTTTGTCCACA
CTAAAAATAATCAAATAAACCAATCCTCACCTCAAAAAATTTAGCTACTT
TTTCCATTCCCACTAAACATTTTCTGAAAACAAAAGAATTCAAATAATTT
TCAAATTAAACAATCCCCTCCTATATTGTTGGAAAATTGCAAATCAAGCT
AGCAATATATTTGTGTACACCTTTTCAATATATTGCCGGTATTCGGCAAT
ATACGGTATTATCAATATATATTGCGTACAGTGTATGTAGCCCTTTAGTC
AAATAATATCAATTCGCCTTATACCTCAGAGTAAGTTATATTTTAGCATC
CTTTCTTTACCAGGTGGTCCATTAGCATGCAAGGATGCATCCACTAACAC
ATGGTATGCCTGGGGAATCACATCTTGGGGAGACGGTTGTGCCATAAGAG
GAAAACCTGGAGTCTACGCATCTGTCGTTGAGATGTTAGATTGGATTGGA
ACCTGCACAGGAATAACAGCATCAAAATAGATATAGAGTCTTCCACTCAA
TAAATAACCTAAATGAAACAATAGATGGTATGGTGGCCTCTATCTGCCAT
GTATTTTATTATGTTTTTATAGCAGTAAAGATGTACTATTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026785-exon-sc0000587-1575043694:104081..104148 | TCONS_00026785-exon-sc0000587-1575043694:104081..104148 | Clytia hemisphaerica | exon |
| TCONS_00026785-exon-sc0000587-1575043694:103382..103520 | TCONS_00026785-exon-sc0000587-1575043694:103382..103520 | Clytia hemisphaerica | exon |
| TCONS_00026785-exon-sc0000587-1575043694:100905..101185 | TCONS_00026785-exon-sc0000587-1575043694:100905..101185 | Clytia hemisphaerica | exon |
| TCONS_00026785-exon-sc0000587-1510915933:104081..104148 | TCONS_00026785-exon-sc0000587-1510915933:104081..104148 | Clytia hemisphaerica | exon |
| TCONS_00026785-exon-sc0000587-1510915933:103382..103520 | TCONS_00026785-exon-sc0000587-1510915933:103382..103520 | Clytia hemisphaerica | exon |
| TCONS_00026785-exon-sc0000587-1510915933:100905..101185 | TCONS_00026785-exon-sc0000587-1510915933:100905..101185 | Clytia hemisphaerica | exon |
| TCONS_00026785-exon-sc0000587-1491911889:104081..104148 | TCONS_00026785-exon-sc0000587-1491911889:104081..104148 | Clytia hemisphaerica | exon |
| TCONS_00026785-exon-sc0000587-1491911889:103382..103520 | TCONS_00026785-exon-sc0000587-1491911889:103382..103520 | Clytia hemisphaerica | exon |
| TCONS_00026785-exon-sc0000587-1491911889:100905..101185 | TCONS_00026785-exon-sc0000587-1491911889:100905..101185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000587 | supercontig | sc0000587:100905..104148 - |
Blast
BLAST of TCONS_00026785 vs. Swiss-Prot (Human)
Match: TMPS9 (Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 3.454e-24 Identity = 54/111 (48.65%), Postives = 67/111 (60.36%), Query Frame = 3
Query: 9 RTCYITGWGTTSSGADYIPDVLQETWVKVHSDKKCKRLYSASEITDRMFCANRGNRKVRDTCQGDSGGPLACKDASTNTWYAWGITSWGDGCAIRGKPGVYASVVEMLDWI 341
R C I+GWG T G P++LQ+ V + K C LY+ S +TDRM CA KV D+CQGDSGGPLAC++A +Y GI SWG GCA KPGVY + + WI
Sbjct: 624 RKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYNFS-LTDRMICAGFLEGKV-DSCQGDSGGPLACEEAP-GVFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWI 731 HSP 2 Score: 93.5893 bits (231), Expect = 5.741e-22 Identity = 52/111 (46.85%), Postives = 66/111 (59.46%), Query Frame = 3
Query: 9 RTCYITGWGTTSSGADYIPDVLQETWVKVHSDKKCKRLYSASEITDRMFCANRGNRKVRDTCQGDSGGPLACKDASTNTWYAWGITSWGDGCAIRGKPGVYASVVEMLDWI 341
+ C I+GWG P+VLQ+ V++ C LY S +TDRM CA + KV D+CQGDSGGPL C++ S + A GI SWG GCA +PGVYA V + DWI
Sbjct: 324 KKCLISGWGYLKEDFLVKPEVLQKATVELLDQALCASLYGHS-LTDRMVCAGYLDGKV-DSCQGDSGGPLVCEEPSGRFFLA-GIVSWGIGCAEARRPGVYARVTRLRDWI 431 HSP 3 Score: 85.8853 bits (211), Expect = 2.515e-19 Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 3
Query: 15 CYITGWGTTSSGADYIPDVLQETWVKVHSDKKCKRLYSASEITDRMFCANRGNRKVRDTCQGDSGGPLACKDASTNTWYAWGITSWGDGCAIRGKPGVYASVVEMLDWIG 344
C ITGWG+ G + LQ+ V++ S++ C+R Y +I+ RM CA V D+C GD+GGPLAC++ S W G+TSWG GC PGVY V + WIG
Sbjct: 949 CVITGWGSVREGGS-MARQLQKAAVRLLSEQTCRRFYPV-QISSRMLCAGFPQGGV-DSCSGDAGGPLACREPS-GRWVLTGVTSWGYGCGRPHFPGVYTRVAAVRGWIG 1054
The following BLAST results are available for this feature:
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